mRNA_E-fasciculatus_F_contig14386.3189.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14386.3189.1
Unique NamemRNA_E-fasciculatus_F_contig14386.3189.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14386.3189.1 vs. uniprot
Match: D8LEP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP5_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.600e-36
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 3 
Query:  423 GATGNQTAVRPMCRIGEKQLLMQLVQEYTPEGTRETKARARVWLAIAKRILIPTEVTVTEDAEDTVVMVDYQRGR 647
            GATGNQTAVRPMCRIGEKQLLMQLVQEYTPEGTRETKARARVWL IAKR+LIPTEVTVTEDAEDTVV VDYQRGR
Sbjct:   79 GATGNQTAVRPMCRIGEKQLLMQLVQEYTPEGTRETKARARVWLDIAKRMLIPTEVTVTEDAEDTVVTVDYQRGR 153
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BLAST of mRNA_E-fasciculatus_F_contig14386.3189.1 vs. uniprot
Match: A0A6H5JTZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ7_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.380e-26
Identity = 58/64 (90.62%), Postives = 59/64 (92.19%), Query Frame = 3 
Query:  456 MCRIGEKQLLMQLVQEYTPEGTRETKARARVWLAIAKRILIPTEVTVTEDAEDTVVMVDYQRGR 647
            M RIGEKQLLMQLVQEYTPEGTRETKARARVW AI KR+LIPTEVTVTEDAE TVV VDYQRGR
Sbjct:    1 MARIGEKQLLMQLVQEYTPEGTRETKARARVWTAIVKRMLIPTEVTVTEDAEVTVVTVDYQRGR 64
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14386.3189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEP5_ECTSI1.600e-3696.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTZ7_9PHAE4.380e-2690.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14386contigE-fasciculatus_F_contig14386:1155..2120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size648
Cds size192
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14386.3189.1prot_E-fasciculatus_F_contig14386.3189.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14386 1929..2120 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927927.206851-UTR-E-fasciculatus_F_contig14386:1154..15771622927927.206851-UTR-E-fasciculatus_F_contig14386:1154..1577Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14386 1155..1577 +
1695995754.0355-UTR-E-fasciculatus_F_contig14386:1154..15771695995754.0355-UTR-E-fasciculatus_F_contig14386:1154..1577Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14386 1155..1577 +
1622927927.2202566-UTR-E-fasciculatus_F_contig14386:1896..19281622927927.2202566-UTR-E-fasciculatus_F_contig14386:1896..1928Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14386 1897..1928 +
1695995754.0476446-UTR-E-fasciculatus_F_contig14386:1896..19281695995754.0476446-UTR-E-fasciculatus_F_contig14386:1896..1928Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14386 1897..1928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927927.232685-CDS-E-fasciculatus_F_contig14386:1928..21201622927927.232685-CDS-E-fasciculatus_F_contig14386:1928..2120Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14386 1929..2120 +
1695995754.0586834-CDS-E-fasciculatus_F_contig14386:1928..21201695995754.0586834-CDS-E-fasciculatus_F_contig14386:1928..2120Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14386 1929..2120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14386.3189.1

>prot_E-fasciculatus_F_contig14386.3189.1 ID=prot_E-fasciculatus_F_contig14386.3189.1|Name=mRNA_E-fasciculatus_F_contig14386.3189.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=64bp
MCRIGEKQLLMQLVQEYTPEGTRETKARARVWLAIAKRILIPTEVTVTED
AEDTVVMVDYQRGR
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mRNA from alignment at E-fasciculatus_F_contig14386:1155..2120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14386.3189.1 ID=mRNA_E-fasciculatus_F_contig14386.3189.1|Name=mRNA_E-fasciculatus_F_contig14386.3189.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=966bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14386:1155..2120+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAAATGGGTACGATGGTTTTTCGGCCAATCAGCTGACAGCCTGGGGGTGC
AAACGTCTTGATTTCTGAGTGTACCCGAAAGTGGTGGTGAAGTACCCGGG
TATACCCGTTTCTGGTTACTGGTCAAGGTGGGCCCGCAAGGTTTTTGGGG
GGCCCGCAAGCAAAAAAGGCCCCCTAAGCAAGGGGGGCCCGTAAGCGACT
GCAGGTGGGGCAAAGCGCAGGTGAGCGTGAGAAGTGATGACGGAACGAAG
GCACAAAACTGACTAAAGTATTGGTAATGTTTATGTTGGTCTGAATGCGC
AGCACGCCCCGGTTGGGCGGTGACCAGGCCAACAACCTGAGCAGACGGCG
CGTGTGGCAGATATTTCAGCAGCAGTGACGGGCGAGATTTCCCGAAAGCG
TGACCACGTGGTTGCTTGTGGCGGTGAGTCCCGCAGGTGTGTCGGTCGCC
TTGCTAGACTCCTGCTGTTGCCATGCTGTAGGTTGGAATCTACATGCGCG
TACGTTCGTTGCCCTGTTCCTGTCCTGTTGCACGATGTAGCTCGGGCACC
GTTCTCGTGGGAGGACCGTGTTCTTGTAAAAAAAGAACACGCCTGCTATT
GATTGCATGGCCTCAACGTAAAAAGAAGTGCAAAAGAAGTGCAAGGCGTG
TATCTTGTATCTTGTATTTGGCTGACACGCCAAATACCCTTGCCTTGCCT
CTCTCTGTTCATTGTGTGTGTTGATGTTGGTGTATTGTTTAGGTGCTACG
GGCAACCAGACGGCTGTGAGGCCCATGTGTAGGATTGGAGAGAAGCAGTT
GCTCATGCAACTCGTTCAGGAGTACACACCGGAGGGGACTCGGGAGACCA
AGGCCAGGGCTCGTGTCTGGTTGGCTATCGCGAAGCGGATACTGATCCCT
ACAGAGGTCACGGTCACGGAGGACGCCGAAGATACCGTGGTTATGGTCGA
CTACCAGCGTGGACGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14386:1155..2120+

>mRNA_E-fasciculatus_F_contig14386.3189.1 ID=mRNA_E-fasciculatus_F_contig14386.3189.1|Name=mRNA_E-fasciculatus_F_contig14386.3189.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14386:1155..2120+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGTAGGATTGGAGAGAAGCAGTTGCTCATGCAACTCGTTCAGGAGTA
CACACCGGAGGGGACTCGGGAGACCAAGGCCAGGGCTCGTGTCTGGTTGG
CTATCGCGAAGCGGATACTGATCCCTACAGAGGTCACGGTCACGGAGGAC
GCCGAAGATACCGTGGTTATGGTCGACTACCAGCGTGGACGGATGTGTAG
GATTGGAGAGAAGCAGTTGCTCATGCAACTCGTTCAGGAGTACACACCGG
AGGGGACTCGGGAGACCAAGGCCAGGGCTCGTGTCTGGTTGGCTATCGCG
AAGCGGATACTGATCCCTACAGAGGTCACGGTCACGGAGGACGCCGAAGA
TACCGTGGTTATGGTCGACTACCAGCGTGGACGG
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