mRNA_E-fasciculatus_F_contig1438.3185.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1438.3185.1
Unique NamemRNA_E-fasciculatus_F_contig1438.3185.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1438.3185.1 vs. uniprot
Match: D8LKY8_ECTSI (Pleckstrin homology (PH) domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKY8_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 9.050e-116
Identity = 300/419 (71.60%), Postives = 307/419 (73.27%), Query Frame = 1 
Query:  232 ESPASEDDEDDASVPSPVLSAPGLKTFSGRGTSGNNTLGFAGFYSGGGHSTATAVNYRPEEPPPSAATASS--TTPRGVPEDIAVNTPVAPSPEAVLSAPGRKTFSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALTLAVDNPPSPDETKGDEDSGEWGDSNGSADSTGGGRALKVPAPTQANVNAGGDPAVPFATFRGGGRATPSREEHGPGHG----MPSLGLGVGSALAACWGVQVQEANDHDENSRPTEFDLSNSEEVEVEERIVVRKPPPVLVAMSRGTSATSSTVGGAGDYGEYDEGFGDDIRSAAGSSSRSXXXXXSSRDSSLFLAAVSPSRVPPPLVSVASSVSHPPVSMASSVVSGGSFSNPWLSPTP 1470
            ESPAS +D++DASVPSPVLSAPG KTFSGRGTSGNNTLGFAGFYSG                           TTPR VP++I VNTPVAPSPEAVLSAPGRKTFSGG                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   HALTLAVDNPPSPDETKGDEDSGEWGDSNGSADSTGGGR LKVPAPTQANVNAGGDPAVPFATFRGGGRATPSRE           MPSL LGVGSALAACWGVQ  E ND+DENSRPTEFDL NSEEVEVEERIVVRKPPPVLVAMSRGTSAT             DE FGDD RSAAGSS        SSRDSSL L AVSPSRVPPPLVSVAS  + PPVS ASS   GG    PW  P P
Sbjct:  636 ESPASGEDDEDASVPSPVLSAPGRKTFSGRGTSGNNTLGFAGFYSGXXXXXXXXXXXXXXXXXXXXXXXXXXXTTPR-VPDNITVNTPVAPSPEAVLSAPGRKTFSGGGGAARRSSKSGSLGFGFSGADDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---HALTLAVDNPPSPDETKGDEDSGEWGDSNGSADSTGGGRPLKVPAPTQANVNAGGDPAVPFATFRGGGRATPSREGQXXXXXXXXXMPSLRLGVGSALAACWGVQ--ETNDNDENSRPTEFDLGNSEEVEVEERIVVRKPPPVLVAMSRGTSATXXXXXXXXXXXXXDEVFGDDARSAAGSSGSG-----SSRDSSLLLTAVSPSRVPPPLVSVASWGTLPPVSRASSCSLGGLVLQPWAIPHP 1043
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1438.3185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKY8_ECTSI9.050e-11671.60Pleckstrin homology (PH) domain-containing protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1438contigE-fasciculatus_F_contig1438:69..2734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.1
Seed ortholog evalue2.6e-42
Seed eggNOG ortholog2880.D8LKY8
EggNOG free text desc.Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
EggNOG OGsCOG5422@1,KOG4424@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPleckstrin homology domain
Ec32 orthologEc-11_006060.1
Exons1
Model size2666
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1438.3185.1prot_E-fasciculatus_F_contig1438.3185.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1438 1065..1835 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927926.634732-UTR-E-fasciculatus_F_contig1438:68..10641622927926.634732-UTR-E-fasciculatus_F_contig1438:68..1064Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1438 69..1064 +
1695995753.7959604-UTR-E-fasciculatus_F_contig1438:68..10641695995753.7959604-UTR-E-fasciculatus_F_contig1438:68..1064Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1438 69..1064 +
1622927926.6702404-UTR-E-fasciculatus_F_contig1438:1835..27341622927926.6702404-UTR-E-fasciculatus_F_contig1438:1835..2734Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1438 1836..2734 +
1695995753.8156686-UTR-E-fasciculatus_F_contig1438:1835..27341695995753.8156686-UTR-E-fasciculatus_F_contig1438:1835..2734Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1438 1836..2734 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927926.6547704-CDS-E-fasciculatus_F_contig1438:1064..18351622927926.6547704-CDS-E-fasciculatus_F_contig1438:1064..1835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1438 1065..1835 +
1695995753.8063328-CDS-E-fasciculatus_F_contig1438:1064..18351695995753.8063328-CDS-E-fasciculatus_F_contig1438:1064..1835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1438 1065..1835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1438.3185.1

>prot_E-fasciculatus_F_contig1438.3185.1 ID=prot_E-fasciculatus_F_contig1438.3185.1|Name=mRNA_E-fasciculatus_F_contig1438.3185.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=257bp
MPSLGLGVGSALAACWGVQVQEANDHDENSRPTEFDLSNSEEVEVEERIV
VRKPPPVLVAMSRGTSATSSTVGGAGDYGEYDEGFGDDIRSAAGSSSRSG
SGSGSSRDSSLFLAAVSPSRVPPPLVSVASSVSHPPVSMASSVVSGGSFS
NPWLSPTPNQQQQAGSAEPPPGDSMSWLQPLPPPPPPPPRKDGGAKAESP
WEPLSSSSSGAGAAAGRRGGMGLAYPSGRWVQTPQTGEILEEQPQARAEP
KDGGRV*
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mRNA from alignment at E-fasciculatus_F_contig1438:69..2734+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1438.3185.1 ID=mRNA_E-fasciculatus_F_contig1438.3185.1|Name=mRNA_E-fasciculatus_F_contig1438.3185.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2666bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1438:69..2734+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAATCTACGTGTCGAGGACTAACGACATCGTCTGGGCGCTGCAGCAGCA
GCAGCAACAGCAGCAGCAGCACCCCGGGATAGGCGGGCTCCGTTTCAGCG
GCGGCGGCAGGCGACAAGTCAAGCTAACCGTCCTCCGCGGCTTCCCCGAT
AGCGAGAAGCCGTGGCTGCCCCGCCTGACCCTGGAGCCTTCGCCCACGGC
TACTGTTCTCACCCCTCCGAGCAGCGCGGTAGAGTCTCCGGCTAGCGAAG
ACGACGAGGACGATGCGAGCGTGCCGTCCCCCGTGCTGTCCGCTCCCGGC
CTGAAAACGTTCAGCGGCCGCGGCACCTCGGGGAACAACACGCTGGGTTT
CGCGGGCTTTTACAGCGGCGGCGGTCACAGCACGGCAACGGCGGTTAATT
ACCGCCCCGAGGAACCACCGCCTTCGGCGGCAACCGCGAGCTCGACGACC
CCGCGGGGGGTGCCCGAGGACATCGCCGTCAACACGCCGGTGGCCCCGAG
CCCCGAGGCCGTTCTTTCGGCTCCCGGCCGGAAGACGTTCAGCGGTGGTG
GTGGTGGTGGTGGCACGGCAAGCCTGTCCAGCAAGAGCGGCAAGGGGCTA
GGGTTCGGTTTCTCCGGGGCGGACCACGACGAACAAGAACCGGCGCCGAC
CCTGACCCAGCAGCAGCGGCGGCAGCGGGCCTTCCTGTCGACGACGGCGA
CGACGGTGGAGCTGGGCAAGAGCGGCGGCGGCGGCGGCAGCAGCAGCAGC
CACGCGCTCACCCTAGCCGTGGACAACCCGCCCAGCCCGGACGAAACGAA
GGGCGACGAGGACTCCGGGGAGTGGGGGGATTCGAACGGCTCGGCCGATA
GCACCGGCGGGGGGAGGGCCCTCAAGGTGCCGGCCCCGACCCAGGCTAAC
GTTAACGCCGGCGGGGACCCCGCGGTACCGTTCGCGACGTTCCGCGGGGG
CGGGAGGGCGACGCCGTCGCGGGAGGAGCATGGGCCGGGGCACGGGATGC
CGTCGCTGGGGCTCGGGGTCGGCAGCGCGCTCGCGGCCTGCTGGGGGGTG
CAGGTGCAGGAGGCCAACGACCATGACGAGAACTCTCGCCCGACGGAGTT
CGACCTGAGCAACAGCGAGGAAGTGGAGGTGGAGGAGAGGATCGTGGTCC
GGAAGCCGCCCCCCGTCCTGGTCGCCATGTCCAGGGGCACGAGCGCCACC
TCCAGCACGGTGGGGGGCGCCGGCGACTACGGCGAGTACGACGAGGGCTT
CGGGGACGACATCCGTTCCGCGGCGGGATCATCATCCAGGTCCGGGTCAG
GGTCAGGGTCCAGCCGCGACTCGTCCCTCTTCCTGGCCGCGGTCTCCCCG
TCGCGGGTGCCCCCCCCCCTCGTCTCGGTCGCATCTTCCGTTTCCCACCC
CCCTGTGTCGATGGCCTCGTCGGTAGTCTCAGGGGGCTCGTTCTCCAACC
CTTGGCTATCCCCCACCCCGAACCAGCAGCAGCAGGCGGGCTCTGCGGAG
CCCCCCCCGGGGGACTCGATGTCGTGGCTGCAGCCGCTGCCGCCGCCCCC
GCCCCCGCCCCCGCGGAAGGACGGGGGGGCGAAGGCGGAGAGCCCTTGGG
AGCCGTTGTCGTCGTCGTCATCGGGTGCGGGGGCGGCGGCGGGCAGGCGG
GGGGGGATGGGACTGGCCTACCCGTCCGGGAGGTGGGTGCAGACTCCCCA
GACGGGGGAGATACTGGAGGAGCAGCCTCAGGCGCGCGCGGAGCCGAAGG
ACGGGGGCAGGGTGTAGTATGTCTGCGTACGGCATGGCACGACACGGTAC
CGCGGTAAACTTTGTGGTGGCCTGTTGAAGTTGTGTCGTCTGTTTGTGTC
GTAGTCTGCTTTTAATAGTTTTAGTCTGCCATGCATCGACCGCGCTACCA
CAGTAACCTAGGCGGCGATGGTTGGCGGACTTAAGACAGTGAGACACATG
AGTCTTTTTTTGTCACTGATATATATTATAAGCGTAGCGACGACGACGAC
AACGCCTCCTATTATTACATTAGCAGTCCGCCGGGTTGTATGCGGGGTAA
TGTGGTGTGTGTGTGTGTGATTTATTATCGCGGTCTCATGGATGGCTGAG
ACTCTAAGTGAGGTCAGCGTCAACGGAGGGAATTGGCGTTGATCTTGATT
GAGACACGATTTTTTTGTTTTGTTGTGTGTGCCTCGGTGCGGCTGGCTGG
CCAGCTGGTAACGTCGGCCACGAATGGAGTGAAGGGAGTGAAGGGAGTGA
AGGGAGTGAAGGTGGGCGGTATCGGACGGCTCGTGGACGATTTTCCGTGG
ACCGAACAGAGAGAGAGCTTCCGTTTGGGGCCTCGAAGAGAGTGAGTGCG
GTACGGTATACGGTACGGTACGATGTGCCATGGCTGGCGTAGGAGAGAAG
TGGGGTTAGATAAAAATGAGATGAGAAGGGGCGTCTTGTACGCCCCTGTT
TTTGGCCTCGGCTTGCGCCCGTTGTTGCGCCCGTTCGTTTTGATTGATCG
CGTGGCGTATGCCATCGCCTGTCTACCGCTGTGCTAGAATTGCAGGTCAA
TTTGTTGGTGTTGGTGGTTGGTTGTTGTCTGTTTGCTGTTTGAAACGAAA
CGAAACGAAACGAAGCGAAGCGTAAGCGAAAACATAAGTGTACATGTAAT
ACTCATAATATCGATC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1438:69..2734+

>mRNA_E-fasciculatus_F_contig1438.3185.1 ID=mRNA_E-fasciculatus_F_contig1438.3185.1|Name=mRNA_E-fasciculatus_F_contig1438.3185.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1542bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1438:69..2734+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGTCGCTGGGGCTCGGGGTCGGCAGCGCGCTCGCGGCCTGCTGGGG
GGTGCAGGTGCAGGAGGCCAACGACCATGACGAGAACTCTCGCCCGACGG
AGTTCGACCTGAGCAACAGCGAGGAAGTGGAGGTGGAGGAGAGGATCGTG
GTCCGGAAGCCGCCCCCCGTCCTGGTCGCCATGTCCAGGGGCACGAGCGC
CACCTCCAGCACGGTGGGGGGCGCCGGCGACTACGGCGAGTACGACGAGG
GCTTCGGGGACGACATCCGTTCCGCGGCGGGATCATCATCCAGGTCCGGG
TCAGGGTCAGGGTCCAGCCGCGACTCGTCCCTCTTCCTGGCCGCGGTCTC
CCCGTCGCGGGTGCCCCCCCCCCTCGTCTCGGTCGCATCTTCCGTTTCCC
ACCCCCCTGTGTCGATGGCCTCGTCGGTAGTCTCAGGGGGCTCGTTCTCC
AACCCTTGGCTATCCCCCACCCCGAACCAGCAGCAGCAGGCGGGCTCTGC
GGAGCCCCCCCCGGGGGACTCGATGTCGTGGCTGCAGCCGCTGCCGCCGC
CCCCGCCCCCGCCCCCGCGGAAGGACGGGGGGGCGAAGGCGGAGAGCCCT
TGGGAGCCGTTGTCGTCGTCGTCATCGGGTGCGGGGGCGGCGGCGGGCAG
GCGGGGGGGGATGGGACTGGCCTACCCGTCCGGGAGGTGGGTGCAGACTC
CCCAGACGGGGGAGATACTGGAGGAGCAGCCTCAGGCGCGCGCGGAGCCG
AAGGACGGGGGCAGGGTGTAGATGCCGTCGCTGGGGCTCGGGGTCGGCAG
CGCGCTCGCGGCCTGCTGGGGGGTGCAGGTGCAGGAGGCCAACGACCATG
ACGAGAACTCTCGCCCGACGGAGTTCGACCTGAGCAACAGCGAGGAAGTG
GAGGTGGAGGAGAGGATCGTGGTCCGGAAGCCGCCCCCCGTCCTGGTCGC
CATGTCCAGGGGCACGAGCGCCACCTCCAGCACGGTGGGGGGCGCCGGCG
ACTACGGCGAGTACGACGAGGGCTTCGGGGACGACATCCGTTCCGCGGCG
GGATCATCATCCAGGTCCGGGTCAGGGTCAGGGTCCAGCCGCGACTCGTC
CCTCTTCCTGGCCGCGGTCTCCCCGTCGCGGGTGCCCCCCCCCCTCGTCT
CGGTCGCATCTTCCGTTTCCCACCCCCCTGTGTCGATGGCCTCGTCGGTA
GTCTCAGGGGGCTCGTTCTCCAACCCTTGGCTATCCCCCACCCCGAACCA
GCAGCAGCAGGCGGGCTCTGCGGAGCCCCCCCCGGGGGACTCGATGTCGT
GGCTGCAGCCGCTGCCGCCGCCCCCGCCCCCGCCCCCGCGGAAGGACGGG
GGGGCGAAGGCGGAGAGCCCTTGGGAGCCGTTGTCGTCGTCGTCATCGGG
TGCGGGGGCGGCGGCGGGCAGGCGGGGGGGGATGGGACTGGCCTACCCGT
CCGGGAGGTGGGTGCAGACTCCCCAGACGGGGGAGATACTGGAGGAGCAG
CCTCAGGCGCGCGCGGAGCCGAAGGACGGGGGCAGGGTGTAG
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