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Homology
BLAST of mRNA_E-fasciculatus_F_contig14377.3183.1 vs. uniprot
Match: D8LT04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT04_ECTSI) HSP 1 Score: 345 bits (885), Expect = 4.910e-116 Identity = 214/238 (89.92%), Postives = 226/238 (94.96%), Query Frame = 1
Query: 1 HEAVSMEVRTGSGETRRLEGLDAQTPFSSVGWLVQGGGWLTDFDVLDEGYTGDGEAQTGQISATWDMSSSGANSTSSYQHEGSSPYSATSANSSSGVAAAVRRDVAACNIRSWWDIAAMEQERARQPAPLATVAAPAXXXXXXXXXXXXXXXXXXXXXXS-VGTVGAARGPSAKKMSNAEQAQAMIQHLDEMMEGLERDKLTGVRSIDDVEEEVRELRRQQKELRRKHPGRRRFLGLF 711
+E VSME+RTGSGETRRL+GLDAQTPFSSVG LVQGGGWLTDFDVLDEG TGDGEAQ+GQI ATWD+SSSGA+S SSY+HEGSSPYSATSAN+SSGVAAAVRRDVAACNIRSWWDIAA+EQE+ARQPAPLATVA AXXXXXXXXXXXXXXXXXXXXXX VGTVGAARG SAKKMSNAEQA+AMIQHLDEM+E LERDKLTGVRSIDDVEE VRELRRQQKELRRKHPGRRRFLGLF
Sbjct: 138 NEPVSMEIRTGSGETRRLDGLDAQTPFSSVGRLVQGGGWLTDFDVLDEGDTGDGEAQSGQIPATWDISSSGASSASSYEHEGSSPYSATSANTSSGVAAAVRRDVAACNIRSWWDIAALEQEQARQPAPLATVAGSAXXXXXXXXXXXXXXXXXXXXXXXXVGTVGAARGSSAKKMSNAEQARAMIQHLDEMVEALERDKLTGVRSIDDVEEAVRELRRQQKELRRKHPGRRRFLGLF 375
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-08_004340.1 |
| Exons | 4 |
| Model size | 714 |
| Cds size | 699 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14377.3183.1 >prot_E-fasciculatus_F_contig14377.3183.1 ID=prot_E-fasciculatus_F_contig14377.3183.1|Name=mRNA_E-fasciculatus_F_contig14377.3183.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=233bp
MEVRTGSGETRRLEGLDAQTPFSSVGWLVQGGGWLTDFDVLDEGYTGDGE
AQTGQISATWDMSSSGANSTSSYQHEGSSPYSATSANSSSGVAAAVRRDV
AACNIRSWWDIAAMEQERARQPAPLATVAAPASSSGSSSARAGSTGGGGA
AASSSVGTVGAARGPSAKKMSNAEQAQAMIQHLDEMMEGLERDKLTGVRS
IDDVEEEVRELRRQQKELRRKHPGRRRFLGLF* back to topmRNA from alignment at E-fasciculatus_F_contig14377:63..2218+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig14377.3183.1 ID=mRNA_E-fasciculatus_F_contig14377.3183.1|Name=mRNA_E-fasciculatus_F_contig14377.3183.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2156bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14377:63..2218+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACGAAGCCGTGAGCATGGAGGTTCGTACCGGCAGCGGAGAAACCCGCCG
CCTTGAAGGCTTGGACGCCCAGACGCCATTTTCGTCCGTTGGTTGGCTGG
TGCAAGGCGGGGGCTGGCTGACAGACTTTGACGTGTTGGACGAGGGATAT
ACCGGCGACGGGGAGGTATTACGCACGCGTGCTTGTCTGTCGTGTCTCTT
TGGTTCAGATCTCGGGTCTATTGTTCCGCTTGCTATCATTTGCAGTTGGT
TGGTTAGTGTGGAATGGGGAAGGGTTGTCACGAACAAAGCCATTTACGAT
TTGGCCTGTTTCAGCGAAGGTGGCGTCGAGGGCATCGAGGAACGCTATTG
AGGCTCTCTGTTGGGTTGTGTTTTAAGATGCCGTGCTAATTGGTTTGTTT
TGTTCGCAAGTGGTACCCTTGGCTTTGACTGTCGATGTTCATGCCGAGAT
GGTTGTGTGATACCGAACAAGCGCGGTGACAGAACATGGCCCCCTCTCCC
TCCCCATCCTGCAGGCACAAACAGGGCAGATATCGGCCACGTGGGACATG
AGCAGTAGCGGCGCCAATAGCACCAGCAGTTACCAACACGAGGGTAGCTC
CCCGTACTCTGCGACCTCTGCAAACAGCAGCAGCGGCGTCGCCGCGGCCG
TGAGAAGAGACGTGGCCGCGTGCAACATCCGCTCGTGGTGGGACATCGCC
GCCATGGAACAGGAGAGGGCTAGACAACCCGCGCCACTGGCGACGGTAGC
GGCGCCGGCGTCATCATCCGGCAGCTCTTCGGCGAGGGCTGGTTCCACCG
GCGGCGGCGGCGCTGCTGCCAGCTCGTCCGTGGGTACCGTTGGTGCGGCG
AGGGGGCCTTCCGCCAAGGTAGGTGCCTGCCTTCCACGGTTGCCATCCTT
TCGCCGTTGTCGATGCGTCTGCTAAAGTTGGAAGCTGTTTTTGGTAAAGA
CGTTGGGTACAACTGTTGCTGCGGATGCCACTGGTAGTAGGGGTGGACTT
GTTGTTGCCGTCGTCGTCTGGTTTGTTTTTTTTGGTTCGCCAATCCCAAG
CCTGTAAGGGTTAGGCTGGATGGAAAGATCGGGTGGTTCGCTTGTACGTT
TGGCGTGTATCGAAGGATCAAGATTTGACGTGGTGGCCAGGTGCAGGGTG
CGTATATTCTTGTTCCCCAAGATCGAAGGCAAAATCACGGGTCGGTATGA
GGCAGCACGACCAACGCACCTTCTCCCCCCTGCCTCCGCTTCCCGCGACT
TCCCGGTTTTGTTCCTTGTTCGGAGGCCTCTCCTGTGTGTCTCTACCATC
CCTTTCTGCCTGTTGCTGGGCGTGTGACTTAAAATTCAGTACATGCGTCG
GAACATCAAACCAATGCTGTAATTTCGAGGTAGCATTAATCGTGAATCCA
CATAACAGTGACCCACCCCCCACCCTCCCCCCCAACCCACAGAAAATGTC
CAACGCGGAGCAAGCTCAGGCGATGATCCAGCACCTTGATGAAATGATGG
AGGGGTTGGAAAGGGACAAGCTAACGGGAGTACGCTCGGTGAGAATCCAA
TCGCGTCGGGTTCATGTGTTGCCTTGTCTTTCACTTTTTTTTTTCGCGCA
GCGGGAAAAAAAGGGGCTGGCGACTTCTCGGGTGCTGTTTTTCTATACTA
CAAGCCGTGTGAATTCTGTCGCGGTTCCATCTCTGCCTTTGAGTGCTTTT
CCGGCTTTCCGAAAAATAGTTTTCACGTGAAACTTTTTCGAGTCGGAACC
CATCCAAGACCGCGCGGGCATCTCCCAGTCGAAGCTTGGTGGTAACCCTC
AAGATGGACCGGCAAGGAGGCTGTGCCTTGATCGCATGGTTTTTTCTCGA
AAAGGAGTGAGCTTGGGTCTCGAGACCGCGCCGACGGGCTTGTCGAACCA
ATCCTACGTGTCCCACCAACCCTCCAACACCTCGTGTTTCTCTAGCTCGT
GTGTAGCCACGCTGATGATTTTTACACGCAAGACCGAAGGGTGTGCAGCC
GCGCTGAGGATTTGTACACCGATTTCCCCATCATGTTACTGCACCCTGCG
TGGGCAGATTGACGACGTGGAGGAGGAGGTTCGGGAGCTTCGCAGACAGC
AGAAGGAACTGCGCCGAAAGCACCCGGGAAGGCGACGATTCCTCGGGCTG
TTTTAA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig14377:63..2218+ >mRNA_E-fasciculatus_F_contig14377.3183.1 ID=mRNA_E-fasciculatus_F_contig14377.3183.1|Name=mRNA_E-fasciculatus_F_contig14377.3183.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1398bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14377:63..2218+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGTTCGTACCGGCAGCGGAGAAACCCGCCGCCTTGAAGGCTTGGA
CGCCCAGACGCCATTTTCGTCCGTTGGTTGGCTGGTGCAAGGCGGGGGCT
GGCTGACAGACTTTGACGTGTTGGACGAGGGATATACCGGCGACGGGGAG
ATGGAGGTTCGTACCGGCAGCGGAGAAACCCGCCGCCTTGAAGGCTTGGA
CGCCCAGACGCCATTTTCGTCCGTTGGTTGGCTGGTGCAAGGCGGGGGCT
GGCTGACAGACTTTGACGTGTTGGACGAGGGATATACCGGCGACGGGGAG
GCACAAACAGGGCAGATATCGGCCACGTGGGACATGAGCAGTAGCGGCGC
CAATAGCACCAGCAGTTACCAACACGAGGGTAGCTCCCCGTACTCTGCGA
CCTCTGCAAACAGCAGCAGCGGCGTCGCCGCGGCCGTGAGAAGAGACGTG
GCCGCGTGCAACATCCGCTCGTGGTGGGACATCGCCGCCATGGAACAGGA
GAGGGCTAGACAACCCGCGCCACTGGCGACGGTAGCGGCGCCGGCGTCAT
CATCCGGCAGCTCTTCGGCGAGGGCTGGTTCCACCGGCGGCGGCGGCGCT
GCTGCCAGCTCGTCCGTGGGTACCGTTGGTGCGGCGAGGGGGCCTTCCGC
CAAGGCACAAACAGGGCAGATATCGGCCACGTGGGACATGAGCAGTAGCG
GCGCCAATAGCACCAGCAGTTACCAACACGAGGGTAGCTCCCCGTACTCT
GCGACCTCTGCAAACAGCAGCAGCGGCGTCGCCGCGGCCGTGAGAAGAGA
CGTGGCCGCGTGCAACATCCGCTCGTGGTGGGACATCGCCGCCATGGAAC
AGGAGAGGGCTAGACAACCCGCGCCACTGGCGACGGTAGCGGCGCCGGCG
TCATCATCCGGCAGCTCTTCGGCGAGGGCTGGTTCCACCGGCGGCGGCGG
CGCTGCTGCCAGCTCGTCCGTGGGTACCGTTGGTGCGGCGAGGGGGCCTT
CCGCCAAGAAAATGTCCAACGCGGAGCAAGCTCAGGCGATGATCCAGCAC
CTTGATGAAATGATGGAGGGGTTGGAAAGGGACAAGCTAACGGGAGTACG
CTCGAAAATGTCCAACGCGGAGCAAGCTCAGGCGATGATCCAGCACCTTG
ATGAAATGATGGAGGGGTTGGAAAGGGACAAGCTAACGGGAGTACGCTCG
ATTGACGACGTGGAGGAGGAGGTTCGGGAGCTTCGCAGACAGCAGAAGGA
ACTGCGCCGAAAGCACCCGGGAAGGCGACGATTCCTCGGGCTGTTTTAAA
TTGACGACGTGGAGGAGGAGGTTCGGGAGCTTCGCAGACAGCAGAAGGAA
CTGCGCCGAAAGCACCCGGGAAGGCGACGATTCCTCGGGCTGTTTTAA back to top
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