mRNA_E-fasciculatus_F_contig14375.3180.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14375.3180.1
Unique NamemRNA_E-fasciculatus_F_contig14375.3180.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A6H5KMN8_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN8_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 2.820e-42
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 1
Query:   10 AAPEVYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTEA 225
            AAPEVYDRPFNARDPHG NAWDTTRDLPLIWSTP RTGAGFGPGN+IMVDDTPRKMRFMDAGLVVVPEFTEA
Sbjct:  246 AAPEVYDRPFNARDPHGANAWDTTRDLPLIWSTPGRTGAGFGPGNTIMVDDTPRKMRFMDAGLVVVPEFTEA 317          
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A7S2D3W3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3W3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 4.130e-20
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   22 VYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTEA 225
            +YDR +NA D  G  +WDT RD+  IWSTP + G GF  GN+IM+DDT RKMR     ++VVPEF EA
Sbjct:   27 IYDRDYNAEDKSGTKSWDTMRDMHRIWSTPGKIGYGFDAGNTIMIDDTMRKMRNFPDNVIVVPEFKEA 94          
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A7S3K1S4_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1S4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.840e-17
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   22 VYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTE 222
            +Y+R FN  DP   N+WDT RDL  +WSTP+R   GF P N++++DDTPRKMR     ++VVP FTE
Sbjct:  221 LYERVFNKPDPFAENSWDTMRDLEKLWSTPNRPAYGFNPTNTLVIDDTPRKMREHPHNVIVVPTFTE 287          
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A7S1XU20_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU20_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.640e-17
Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   22 VYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTE 222
            +Y R FN  DP G N+WDT RDL  +W+   + G GF   N+IMVDDTPRKMR M      VPEF E
Sbjct:  127 IYPRAFNVADPQGKNSWDTHRDLAGVWAAQGKVGFGFSEANTIMVDDTPRKMRHMPRNAFFVPEFNE 193          
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: F0XVF5_AURAN (FCP1 homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF5_AURAN)

HSP 1 Score: 77.8 bits (190), Expect = 3.010e-15
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    7 GAAPEVYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTEA 225
            G   ++Y+R FN  D  G NAWDT RDLP +W TP +   GF   N++++DDT RKMR   + ++VVP + EA
Sbjct:  226 GKRADMYERKFNKDDASGENAWDTMRDLPKVWGTPAKAAHGFDETNTLVIDDTHRKMREYPSNVLVVPTYDEA 298          
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A7S2CI38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CI38_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.870e-14
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   19 EVYDRPFNARDP-HGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEF 216
            E+YDR FN +D   G   WDT RD+  IW+T  R G GF   N++MVDD+ RKMR     LV++PEF
Sbjct:  243 EIYDRDFNKKDEWDGAKDWDTVRDMHKIWTTKGRAGYGFNARNTVMVDDSSRKMRQFPGNLVLIPEF 309          
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A7S2RHV1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHV1_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.040e-13
Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 SNGAAPEVYDRPFNARDP--HGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPE 213
            ++G   ++YDR FN  D    G   WDT RDL  +WST D+ G GF   N++MVDDTPRKMR      V VPE
Sbjct:  294 TDGVRVDIYDREFNVADRGHDGAKHWDTMRDLERVWSTVDKVGNGFSWHNTVMVDDTPRKMRHSPQNAVFVPE 366          
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A8J2WY59_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY59_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.620e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1
Query:   19 EVYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGA-GFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTE 222
            ++Y+R FN  DP G N +DT RDLP +WS+     A GF   N++++DDT RKMR +   ++VVP F E
Sbjct:  362 DIYERKFNKADPTGANDYDTMRDLPSVWSSVKPGSARGFTAENTVVIDDTLRKMRELPHNVLVVPPFEE 430          
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A0L0D347_THETB (FCP1 homology domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D347_THETB)

HSP 1 Score: 55.8 bits (133), Expect = 2.480e-7
Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query:   22 VYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGA-GFGPGNSIMVDDTPRKMRFMDAGLVVVPEF 216
            V  R  N  DP G  + DT RDL  +W   D  GA GFGP N+I+VD+  RK+R +    +VVP F
Sbjct:  168 VLHRDHNKPDPTGAKSHDTIRDLGAVWGEEDGPGAAGFGPHNTIVVDNEFRKVREVPHNALVVPTF 233          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KMN8_9PHAE2.820e-4295.83FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
A0A7S2D3W3_9STRA4.130e-2055.88Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3K1S4_9STRA2.840e-1753.73Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S1XU20_9STRA3.640e-1753.73Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0XVF5_AURAN3.010e-1546.58FCP1 homology domain-containing protein n=1 Tax=Au... [more]
A0A7S2CI38_9STRA5.870e-1450.75Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RHV1_9STRA1.040e-1349.32Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2WY59_9STRA1.620e-1146.38Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0L0D347_THETB2.480e-745.45FCP1 homology domain-containing protein n=1 Tax=Th... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14375contigE-fasciculatus_F_contig14375:6..230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue3.7e-13
Seed eggNOG ortholog44056.XP_009032255.1
EggNOG OGs2C3YT@1,2SFYY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927926.154873-CDS-E-fasciculatus_F_contig14375:5..2301622927926.154873-CDS-E-fasciculatus_F_contig14375:5..230Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14375 6..230 +
1695995753.6658745-CDS-E-fasciculatus_F_contig14375:5..2301695995753.6658745-CDS-E-fasciculatus_F_contig14375:5..230Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14375 6..230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14375.3180.1prot_E-fasciculatus_F_contig14375.3180.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14375 6..230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14375.3180.1

>prot_E-fasciculatus_F_contig14375.3180.1 ID=prot_E-fasciculatus_F_contig14375.3180.1|Name=mRNA_E-fasciculatus_F_contig14375.3180.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=75bp
SNGAAPEVYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSI
MVDDTPRKMRFMDAGLVVVPEFTEA
back to top

mRNA from alignment at E-fasciculatus_F_contig14375:6..230+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14375.3180.1 ID=mRNA_E-fasciculatus_F_contig14375.3180.1|Name=mRNA_E-fasciculatus_F_contig14375.3180.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=225bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14375:6..230+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAACGGGGCAGCGCCCGAGGTGTACGACCGACCGTTTAACGCGCGTGA CCCCCACGGCGTCAACGCCTGGGACACAACCCGCGACCTGCCGCTCATTT GGTCCACGCCTGACCGCACGGGGGCGGGCTTCGGCCCCGGCAACTCCATC ATGGTCGACGATACCCCGAGAAAGATGCGGTTCATGGACGCGGGGTTGGT GGTGGTTCCGGAGTTCACGGAGGCG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14375:6..230+

>mRNA_E-fasciculatus_F_contig14375.3180.1 ID=mRNA_E-fasciculatus_F_contig14375.3180.1|Name=mRNA_E-fasciculatus_F_contig14375.3180.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14375:6..230+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCAACGGGGCAGCGCCCGAGGTGTACGACCGACCGTTTAACGCGCGTGA
CCCCCACGGCGTCAACGCCTGGGACACAACCCGCGACCTGCCGCTCATTT
GGTCCACGCCTGACCGCACGGGGGCGGGCTTCGGCCCCGGCAACTCCATC
ATGGTCGACGATACCCCGAGAAAGATGCGGTTCATGGACGCGGGGTTGGT
GGTGGTTCCGGAGTTCACGGAGGCGAGCAACGGGGCAGCGCCCGAGGTGT
ACGACCGACCGTTTAACGCGCGTGACCCCCACGGCGTCAACGCCTGGGAC
ACAACCCGCGACCTGCCGCTCATTTGGTCCACGCCTGACCGCACGGGGGC
GGGCTTCGGCCCCGGCAACTCCATCATGGTCGACGATACCCCGAGAAAGA
TGCGGTTCATGGACGCGGGGTTGGTGGTGGTTCCGGAGTTCACGGAGGCG
back to top