mRNA_E-fasciculatus_F_contig14375.3180.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A6H5KMN8_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN8_9PHAE) HSP 1 Score: 151 bits (381), Expect = 2.820e-42 Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 1
Query: 10 AAPEVYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTEA 225
AAPEVYDRPFNARDPHG NAWDTTRDLPLIWSTP RTGAGFGPGN+IMVDDTPRKMRFMDAGLVVVPEFTEA
Sbjct: 246 AAPEVYDRPFNARDPHGANAWDTTRDLPLIWSTPGRTGAGFGPGNTIMVDDTPRKMRFMDAGLVVVPEFTEA 317
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A7S2D3W3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3W3_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 4.130e-20 Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 22 VYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTEA 225
+YDR +NA D G +WDT RD+ IWSTP + G GF GN+IM+DDT RKMR ++VVPEF EA
Sbjct: 27 IYDRDYNAEDKSGTKSWDTMRDMHRIWSTPGKIGYGFDAGNTIMIDDTMRKMRNFPDNVIVVPEFKEA 94
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A7S3K1S4_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1S4_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 2.840e-17 Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 22 VYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTE 222
+Y+R FN DP N+WDT RDL +WSTP+R GF P N++++DDTPRKMR ++VVP FTE
Sbjct: 221 LYERVFNKPDPFAENSWDTMRDLEKLWSTPNRPAYGFNPTNTLVIDDTPRKMREHPHNVIVVPTFTE 287
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A7S1XU20_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU20_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 3.640e-17 Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 1
Query: 22 VYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTE 222
+Y R FN DP G N+WDT RDL +W+ + G GF N+IMVDDTPRKMR M VPEF E
Sbjct: 127 IYPRAFNVADPQGKNSWDTHRDLAGVWAAQGKVGFGFSEANTIMVDDTPRKMRHMPRNAFFVPEFNE 193
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: F0XVF5_AURAN (FCP1 homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF5_AURAN) HSP 1 Score: 77.8 bits (190), Expect = 3.010e-15 Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 7 GAAPEVYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTEA 225
G ++Y+R FN D G NAWDT RDLP +W TP + GF N++++DDT RKMR + ++VVP + EA
Sbjct: 226 GKRADMYERKFNKDDASGENAWDTMRDLPKVWGTPAKAAHGFDETNTLVIDDTHRKMREYPSNVLVVPTYDEA 298
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A7S2CI38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CI38_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 5.870e-14 Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 19 EVYDRPFNARDP-HGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPEF 216
E+YDR FN +D G WDT RD+ IW+T R G GF N++MVDD+ RKMR LV++PEF
Sbjct: 243 EIYDRDFNKKDEWDGAKDWDTVRDMHKIWTTKGRAGYGFNARNTVMVDDSSRKMRQFPGNLVLIPEF 309
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A7S2RHV1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHV1_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.040e-13 Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = 1
Query: 1 SNGAAPEVYDRPFNARDP--HGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIMVDDTPRKMRFMDAGLVVVPE 213
++G ++YDR FN D G WDT RDL +WST D+ G GF N++MVDDTPRKMR V VPE
Sbjct: 294 TDGVRVDIYDREFNVADRGHDGAKHWDTMRDLERVWSTVDKVGNGFSWHNTVMVDDTPRKMRHSPQNAVFVPE 366
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A8J2WY59_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY59_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 1.620e-11 Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 1
Query: 19 EVYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGA-GFGPGNSIMVDDTPRKMRFMDAGLVVVPEFTE 222
++Y+R FN DP G N +DT RDLP +WS+ A GF N++++DDT RKMR + ++VVP F E
Sbjct: 362 DIYERKFNKADPTGANDYDTMRDLPSVWSSVKPGSARGFTAENTVVIDDTLRKMRELPHNVLVVPPFEE 430
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Match: A0A0L0D347_THETB (FCP1 homology domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D347_THETB) HSP 1 Score: 55.8 bits (133), Expect = 2.480e-7 Identity = 30/66 (45.45%), Postives = 38/66 (57.58%), Query Frame = 1
Query: 22 VYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGA-GFGPGNSIMVDDTPRKMRFMDAGLVVVPEF 216
V R N DP G + DT RDL +W D GA GFGP N+I+VD+ RK+R + +VVP F
Sbjct: 168 VLHRDHNKPDPTGAKSHDTIRDLGAVWGEEDGPGAAGFGPHNTIVVDNEFRKVREVPHNALVVPTF 233 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14375.3180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14375.3180.1 >prot_E-fasciculatus_F_contig14375.3180.1 ID=prot_E-fasciculatus_F_contig14375.3180.1|Name=mRNA_E-fasciculatus_F_contig14375.3180.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=75bp SNGAAPEVYDRPFNARDPHGVNAWDTTRDLPLIWSTPDRTGAGFGPGNSIback to top mRNA from alignment at E-fasciculatus_F_contig14375:6..230+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14375.3180.1 ID=mRNA_E-fasciculatus_F_contig14375.3180.1|Name=mRNA_E-fasciculatus_F_contig14375.3180.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=225bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14375:6..230+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14375:6..230+ >mRNA_E-fasciculatus_F_contig14375.3180.1 ID=mRNA_E-fasciculatus_F_contig14375.3180.1|Name=mRNA_E-fasciculatus_F_contig14375.3180.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14375:6..230+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |