mRNA_E-fasciculatus_F_contig14371.3179.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14371.3179.1
Unique NamemRNA_E-fasciculatus_F_contig14371.3179.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14371.3179.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 6.780e-38
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = 1 
Query:  127 MQRAPASGGQAGLVAAVEPTAAERLDHVGKLLAEKKPWPAFLHLGARATEEWEACPIPVQEALAWMATATVGVLDI 354
            MQRAP SGGQAGLVAAVEPTAAERLDHVGKLLAEKKPWPAFLH+GARATEEWEACP PVQEAL WMA ATVGVLDI
Sbjct:    1 MQRAPTSGGQAGLVAAVEPTAAERLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEALVWMARATVGVLDI 76
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14371.3179.1 vs. uniprot
Match: D7FLM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM4_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 7.650e-38
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:  127 MQRAPASGGQAGLVAAVEPTAAERLDHVGKLLAEKKPWPAFLHLGARATEEWEACPIPVQEALAWMATATVGVLD 351
            MQRAP  GGQAGL  AVEPT+A+RLDHVGKLLAEKKPWPAFLH+ ARATEEWEACP PVQEAL WMATATVG+LD
Sbjct:    1 MQRAPTIGGQAGLATAVEPTSADRLDHVGKLLAEKKPWPAFLHITARATEEWEACPTPVQEALVWMATATVGLLD 75
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14371.3179.1 vs. uniprot
Match: D7FUT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT5_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 5.080e-37
Identity = 64/75 (85.33%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:  127 MQRAPASGGQAGLVAAVEPTAAERLDHVGKLLAEKKPWPAFLHLGARATEEWEACPIPVQEALAWMATATVGVLD 351
            MQRAPA+GGQ  + AAVEPTAAERLDHVGKLLAEK+PWPAFL +GARA EEWEACP PVQEALAWMAT TVGVLD
Sbjct:    1 MQRAPANGGQEDVQAAVEPTAAERLDHVGKLLAEKRPWPAFLQIGARANEEWEACPTPVQEALAWMATTTVGVLD 75
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14371.3179.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 8.570e-35
Identity = 71/101 (70.30%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:   58 TVPVNRVCAQVRGRCLRQYTAAEMQRAPASGGQAGLVAA--VEPTAAERLDHVGKLLAEKKPWPAFLHLGARATEEWEACPIPVQEALAWMATATVGVLDI 354
            T+ V ++  Q +   +R  T  EMQRAPASG QAGL AA  VEPT  ERLDHVGKLLAEKKPWPAFLH+GARATEEWEACP PVQEALAWM T+ VGVL +
Sbjct:    4 TIVVQQLGDQRQAAGVRDGTGGEMQRAPASGDQAGLAAAAVVEPTTVERLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEALAWMTTSAVGVLGV 104
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14371.3179.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.580e-34
Identity = 68/86 (79.07%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:  103 LRQYTAAEMQRAPASGGQAGLVAA--VEPTAAERLDHVGKLLAEKKPWPAFLHLGARATEEWEACPIPVQEALAWMATATVGVLDI 354
            +R     EMQRAPASGGQAGL AA  VEPT  ERLDHVGKLLAEKKPWPAFLH+GARATEEWEACP PVQEALAWM T+ VGVL +
Sbjct:   36 VRDGIGGEMQRAPASGGQAGLAAAAVVEPTTVERLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEALAWMTTSAVGVLGV 121
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14371.3179.1 vs. uniprot
Match: A0A6H5KMV3_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV3_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.820e-33
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:  151 GQAGLVAAVEPTAAERLDHVGKLLAEKKPWPAFLHLGARATEEWEACPIPVQEALAWMATATVGVLD 351
            GQAGLVAAVEPTA ERLDHVG+LLAEKKPWPAFLHLGARAT+EWEACP PVQEALAWMATATVGVLD
Sbjct:   14 GQAGLVAAVEPTAVERLDHVGQLLAEKKPWPAFLHLGARATKEWEACPTPVQEALAWMATATVGVLD 80
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14371.3179.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 7.420e-29
Identity = 59/79 (74.68%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:  127 MQRAPASGGQAGLVAA---VEPTAAERLDHVGKLLAEKKPWPAFLHLGARATEEWEACPIPVQEALAWMATATVGVLDI 354
            MQR PAS  QAGL  A   VEPT  ERL+HVGKLLAEK+PWPAFLH+GARATEEWEACP   QEAL WM TA VGVLD+
Sbjct:    1 MQRVPASASQAGLAVATTAVEPTTVERLEHVGKLLAEKRPWPAFLHIGARATEEWEACPTLAQEALTWMTTAAVGVLDV 79
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14371.3179.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 5.560e-20
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:  196 RLDHVGKLLAEKKPWPAFLHLGARATEEWEACPIPVQEALAWMATATVGVLDI 354
            RL+ VGKLLAEK+PWPAFLH+ ARATEEWEACP   QEAL W+ATATVGVLD+
Sbjct:   15 RLERVGKLLAEKRPWPAFLHIEARATEEWEACPTVAQEALTWIATATVGVLDV 67
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14371.3179.1 vs. uniprot
Match: A0A6H5KK53_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK53_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.970e-13
Identity = 38/74 (51.35%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:  133 RAPASGGQAGLVAAVEPTAAERLDHVGKLLAEKKPWPAFLHLGARATEEWEACPIPVQEALAWMATATVGVLDI 354
            RAP+SG      AA  PT  ERL+ V  LLA KKPWPAFL  G     EW+ CP   ++AL WMA+  VG+LD+
Sbjct:    4 RAPSSGSSVQAGAAAAPTTPERLEEVETLLAYKKPWPAFLCAGVDVHGEWDNCPEGARDALEWMASTAVGLLDV 77
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14371.3179.1 vs. uniprot
Match: A0A6H5J6Q8_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 9.440e-12
Identity = 37/74 (50.00%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:  133 RAPASGGQAGLVAAVEPTAAERLDHVGKLLAEKKPWPAFLHLGARATEEWEACPIPVQEALAWMATATVGVLDI 354
            RAP+        AA  PT  ERL+ V  LLA KKPWPAFL  G     EW+ CP   ++AL WMA+  VG+LDI
Sbjct:    4 RAPSDVSSVQAGAAAAPTTPERLEEVETLLAYKKPWPAFLCAGVDVHGEWDNCPEGARDALEWMASTAVGLLDI 77
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14371.3179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G6W2_ECTSI6.780e-3893.42NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FLM4_ECTSI7.650e-3885.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUT5_ECTSI5.080e-3785.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G720_ECTSI8.570e-3570.30NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G722_ECTSI1.580e-3479.07NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KMV3_9PHAE1.820e-3394.03NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LGG5_ECTSI7.420e-2974.68NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KXS7_9PHAE5.560e-2079.25NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KK53_9PHAE1.970e-1351.35NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5J6Q8_9PHAE9.440e-1250.00NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14371contigE-fasciculatus_F_contig14371:2..1275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue8.7e-33
Seed eggNOG ortholog2880.D7G6W2
KEGG koko:K10407
KEGG Pathwayko05132,map05132
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Hectar predicted targeting categorymitochondrion
Exons3
Model size355
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14371.3179.1prot_E-fasciculatus_F_contig14371.3179.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14371 3..1275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927926.0811405-CDS-E-fasciculatus_F_contig14371:2..1611622927926.0811405-CDS-E-fasciculatus_F_contig14371:2..161Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14371 3..161 -
1695995753.636483-CDS-E-fasciculatus_F_contig14371:2..1611695995753.636483-CDS-E-fasciculatus_F_contig14371:2..161Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14371 3..161 -
1622927926.0946035-CDS-E-fasciculatus_F_contig14371:350..4511622927926.0946035-CDS-E-fasciculatus_F_contig14371:350..451Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14371 351..451 -
1695995753.6475875-CDS-E-fasciculatus_F_contig14371:350..4511695995753.6475875-CDS-E-fasciculatus_F_contig14371:350..451Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14371 351..451 -
1622927926.1090455-CDS-E-fasciculatus_F_contig14371:1181..12751622927926.1090455-CDS-E-fasciculatus_F_contig14371:1181..1275Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14371 1182..1275 -
1695995753.6561465-CDS-E-fasciculatus_F_contig14371:1181..12751695995753.6561465-CDS-E-fasciculatus_F_contig14371:1181..1275Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14371 1182..1275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14371.3179.1

>prot_E-fasciculatus_F_contig14371.3179.1 ID=prot_E-fasciculatus_F_contig14371.3179.1|Name=mRNA_E-fasciculatus_F_contig14371.3179.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=118bp
VASARIVLKSGGCRLHRPSTVPVNRVCAQVRGRCLRQYTAAEMQRAPASG
GQAGLVAAVEPTAAERLDHVGKLLAEKKPWPAFLHLGARATEEWEACPIP
VQEALAWMATATVGVLDI
back to top

mRNA from alignment at E-fasciculatus_F_contig14371:2..1275-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14371.3179.1 ID=mRNA_E-fasciculatus_F_contig14371.3179.1|Name=mRNA_E-fasciculatus_F_contig14371.3179.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1274bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14371:2..1275- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTAGCCAGTGCACGAATTGTACTCAAGAGCGGCGGGTGTCGTCTACACCG
CCCGTCCACCGTGCCTGTAAACCGAGTGTGTGCTCAGGTGAGAGGTGAGA
GGTGAGAGGTGAGAGAGTGCATGGAATCTCTCCGACAGCAGTCCTTCTTG
GTGCCGCCTTCGCGCACTCGCTGCTGCTATAGCTTTTCGTTATGGTCGCT
CAGAAGCCATTTAGCACGTGACGCAATTCGCGTGACAGCACGCATAGTGT
CGCCTCAGAGAAGTGCAGCGCGTGGACGTACGAGCTGTTTTTTTAATTAT
ATACTTTCCGCCGGAGTTGGTTTGGACATTGCCTCATGTCGCCTAATGTA
CATACAGCCTTGATGCCTTGATCCCCTTGGACCGGGGTCCGCGGCTCATG
TGTGCGCCTGCGATCCTACAACAGCAGTGCTACTGCTGTTTGCAGCACTC
CAACTGCTGTTTGCAGCGCTTTCAGCCTTTTGGTGGTGAGTTGGCGACGA
AGTGGGGATAAATTTCATAGGATTGTTCACAACCTACACACAGCAGCAGC
AGTAGATTACAAGTAGATTACGCTCACAAAATTAAAATTTGGTGTCGACC
GCCACAACAGCAGCTGCTGATCTCGGCAGAAAAAAAACATGTTTTACCTA
CTGGCTGTACACTATGTGTACAGCAGCTGTAGCGTACGACTACTTATCTT
TGGGGCAGCAACTTCGTCAGCGGGCAACAGAGCTTGTAGCTTGGTGTTTT
GCTGTTAAACAGATTTATGCATTCGTCACCTTTACAGCAGCTGTCCGCGT
GTGGTGCCTTGTTGTTCAACAAAGGCCGGTGTCTTCGACAGTACACGGCG
GCGGAGATGCAACGTGCTCCCGCCAGTGGGGGCCAAGCGGGCCTTGTGGC
AGCGGTGGAGCCCACCGCTGCAGAGGTGAGTTCTATCTTCTCACGGAAAG
ACTCACATTTAAGGGTTCTATCATCATGTTGCTGTTAGACATGTCCAATT
TTGCTTTTAGTTATGTCCAATCCCCATCATCGCTCTCAGAAAACTGGTTC
ATGCTTGAGTTTCCACCCTGCCTCCCTCTCTCCTTCCCTCCGTCTGTCCC
CTCTCCCTTGGCAGCGGCTTGACCATGTTGGCAAGCTTCTCGCCGAAAAG
AAGCCCTGGCCCGCCTTTCTGCACCTCGGAGCTCGAGCAACAGAAGAGTG
GGAGGCTTGCCCCATCCCGGTACAGGAGGCTCTGGCATGGATGGCGACAG
CTACGGTTGGGGTGCTCGACATTG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14371:2..1275-

>mRNA_E-fasciculatus_F_contig14371.3179.1 ID=mRNA_E-fasciculatus_F_contig14371.3179.1|Name=mRNA_E-fasciculatus_F_contig14371.3179.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=708bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14371:2..1275- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTAGCCAGTGCACGAATTGTACTCAAGAGCGGCGGGTGTCGTCTACACCG
CCCGTCCACCGTGCCTGTAAACCGAGTGTGTGCTCAGGTGAGAGGTAGCC
AGTGCACGAATTGTACTCAAGAGCGGCGGGTGTCGTCTACACCGCCCGTC
CACCGTGCCTGTAAACCGAGTGTGTGCTCAGGTGAGAGGCCGGTGTCTTC
GACAGTACACGGCGGCGGAGATGCAACGTGCTCCCGCCAGTGGGGGCCAA
GCGGGCCTTGTGGCAGCGGTGGAGCCCACCGCTGCAGAGGCCGGTGTCTT
CGACAGTACACGGCGGCGGAGATGCAACGTGCTCCCGCCAGTGGGGGCCA
AGCGGGCCTTGTGGCAGCGGTGGAGCCCACCGCTGCAGAGCGGCTTGACC
ATGTTGGCAAGCTTCTCGCCGAAAAGAAGCCCTGGCCCGCCTTTCTGCAC
CTCGGAGCTCGAGCAACAGAAGAGTGGGAGGCTTGCCCCATCCCGGTACA
GGAGGCTCTGGCATGGATGGCGACAGCTACGGTTGGGGTGCTCGACATTC
GGCTTGACCATGTTGGCAAGCTTCTCGCCGAAAAGAAGCCCTGGCCCGCC
TTTCTGCACCTCGGAGCTCGAGCAACAGAAGAGTGGGAGGCTTGCCCCAT
CCCGGTACAGGAGGCTCTGGCATGGATGGCGACAGCTACGGTTGGGGTGC
TCGACATT
back to top