mRNA_E-fasciculatus_F_contig14370.3178.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14370.3178.1
Unique NamemRNA_E-fasciculatus_F_contig14370.3178.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14370.3178.1 vs. uniprot
Match: D7G4G4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4G4_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 1.050e-96
Identity = 183/263 (69.58%), Postives = 204/263 (77.57%), Query Frame = 1 
Query:    1 RTWFSATPASSRRTSGEGVGASRPMRTRYKAS-TPSKHAATPSKGESVVLPLQDIKVCIADALTQLFDDKKIVGDLVARMAGHATEANAKKAVLAAINSNSKDFIAAAKNAGKEACAKHLEAPLANLAKTQARNGIEESAATTWKAASADAATKWKTAAQATAKGSAQKNTPQPSEAKLTAAAKAGAKANNDVMMTLVKAEVANQVLQLKTELETRLTEMESSAKADLETRFGSLFTSIQCGLQNACEYISGVVKENGRQLDE 786
            RT   AT  SSRRTSGEGVGA R MR R K+S TPSK  ATPSK  SVVLPL++IKVCIADALT +F DKKIVG LV +MAG A++A A +AV+ AIN+NS +FI AAK AGKEACA+HL+APL +LAK Q        AA  WK  S +      T AQA AK SAQK+TPQ S+AKL AAAKAG  ANN+ +MTLVK EVA+QVLQLKT LE RLTEMESSAKADLETRFGSLFTSIQ GL NACEYI+GVVKENGRQLDE
Sbjct:  113 RTSPEATSTSSRRTSGEGVGAGRTMRLRNKSSSTPSKQTATPSKAGSVVLPLEEIKVCIADALTHVFGDKKIVGTLVDKMAGTASQAKAMRAVVTAINANSSEFITAAKEAGKEACAQHLKAPLTDLAKAQT------DAANKWKDNSVEXXXXXXTTAQALAKSSAQKSTPQVSDAKLNAAAKAGVMANNEALMTLVKTEVASQVLQLKTGLEARLTEMESSAKADLETRFGSLFTSIQSGLTNACEYITGVVKENGRQLDE 369
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BLAST of mRNA_E-fasciculatus_F_contig14370.3178.1 vs. uniprot
Match: D7G494_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G494_ECTSI)

HSP 1 Score: 297 bits (761), Expect = 1.180e-93
Identity = 178/250 (71.20%), Postives = 200/250 (80.00%), Query Frame = 1 
Query:   40 TSGEGVGASRPMRTRYKAS-TPSKHAATPSKGESVVLPLQDIKVCIADALTQLFDDKKIVGDLVARMAGHATEANAKKAVLAAINSNSKDFIAAAKNAGKEACAKHLEAPLANLAKTQARNGIEESAATTWKAASADAATKWKTAAQATAKGSAQKNTPQPSEAKLTAAAKAGAKANNDVMMTLVKAEVANQVLQLKTELETRLTEMESSAKADLETRFGSLFTSIQCGLQNACEYISGVVKENGRQLDE 786
            TSGEGVGA R MR R K+S TPSK AATPSK  SVVLPL++IK CIADALT  F DKKIVG LV +MAG A++A A  AV+ AI +NS++FI AAK AGKEACA++L+APL +LAK Q        AA  WK  S +AATKWKT AQA AK SAQK+TPQ S+AKLTAAAKAG  ANN+ +MTLVK EVA+QVLQLKT LE RLTEMESSAKAD ETRFGSLFTSIQ GL NACE+I+GVVKENGRQLDE
Sbjct:  201 TSGEGVGAGRTMRLRNKSSSTPSKQAATPSKAGSVVLPLEEIKFCIADALTHAFGDKKIVGTLVDKMAGTASQAKAMSAVMTAITANSREFITAAKEAGKEACAQYLKAPLTDLAKAQT------DAANKWKDNSVEAATKWKTTAQALAKSSAQKSTPQVSDAKLTAAAKAGVMANNEALMTLVKTEVASQVLQLKTGLEARLTEMESSAKADQETRFGSLFTSIQSGLTNACEHITGVVKENGRQLDE 444
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BLAST of mRNA_E-fasciculatus_F_contig14370.3178.1 vs. uniprot
Match: D7G0K1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K1_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 7.040e-49
Identity = 105/149 (70.47%), Postives = 115/149 (77.18%), Query Frame = 1 
Query:  340 ACAKHLEAPLANLAKTQARNGIEESAATTWKAASADAATKWKTAAQATAKGSAQKNTPQPSEAKLTAAAKAGAKANNDVMMTLVKAEVANQVLQLKTELETRLTEMESSAKADLETRFGSLFTSIQCGLQNACEYISGVVKENGRQLDE 786
            ACA+HL+APL +LAK Q        AA  WK  S +      T AQA AK SAQK+TPQ S+AKLTAAAKAG  ANN+ +MTLVK EVA+QVLQLKT LE RLTEMESSAKAD ETRFGSLFTSIQ GL NACEYI+GVVKENGRQLDE
Sbjct:    3 ACAQHLKAPLTDLAKAQT------DAANKWKDNSVEXXXXXXTTAQALAKSSAQKSTPQVSDAKLTAAAKAGVMANNEALMTLVKTEVASQVLQLKTGLEARLTEMESSAKADQETRFGSLFTSIQSGLTNACEYITGVVKENGRQLDE 145
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BLAST of mRNA_E-fasciculatus_F_contig14370.3178.1 vs. uniprot
Match: D7FZU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU7_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.730e-26
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:   73 MRTRYKAS-TPSKHAATPSKGESVVLPLQDIKVCIADALTQLFDDKKIVGDLVARMAGHATEANAKKAVLAAINSNSKDFIAAAKNAGKEA 342
            MR R K+S TPSK AATPSK  SVVLPL++I+VCIADALT +F DKKIVG LV +MAG A++A A  AV+ AIN+NS++FI AAK+AGKEA
Sbjct:    1 MRLRNKSSSTPSKQAATPSKAGSVVLPLEEIQVCIADALTHVFGDKKIVGTLVDKMAGTASQAKAMSAVVTAINANSREFITAAKDAGKEA 91
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BLAST of mRNA_E-fasciculatus_F_contig14370.3178.1 vs. uniprot
Match: D7FZU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU6_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 7.170e-16
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:  562 ANNDVMMTLVKAEVANQVLQLKTELETRLTEMESSAKADLETRFGSLFTSI 714
            ANN+ +MTLVK EVA+QVLQLKT+LE RLT+MESSAKADLETR GSLFTSI
Sbjct:    2 ANNEALMTLVKTEVASQVLQLKTDLEARLTQMESSAKADLETRVGSLFTSI 52
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14370.3178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G4G4_ECTSI1.050e-9669.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G494_ECTSI1.180e-9371.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0K1_ECTSI7.040e-4970.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZU7_ECTSI1.730e-2668.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZU6_ECTSI7.170e-1682.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14370contigE-fasciculatus_F_contig14370:991..3236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size789
Cds size789
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14370.3178.1prot_E-fasciculatus_F_contig14370.3178.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14370 991..3236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927925.9790633-CDS-E-fasciculatus_F_contig14370:990..13981622927925.9790633-CDS-E-fasciculatus_F_contig14370:990..1398Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14370 991..1398 +
1695995753.6076798-CDS-E-fasciculatus_F_contig14370:990..13981695995753.6076798-CDS-E-fasciculatus_F_contig14370:990..1398Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14370 991..1398 +
1622927925.9983263-CDS-E-fasciculatus_F_contig14370:1926..20191622927925.9983263-CDS-E-fasciculatus_F_contig14370:1926..2019Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14370 1927..2019 +
1695995753.6158156-CDS-E-fasciculatus_F_contig14370:1926..20191695995753.6158156-CDS-E-fasciculatus_F_contig14370:1926..2019Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14370 1927..2019 +
1622927926.0133634-CDS-E-fasciculatus_F_contig14370:2948..32361622927926.0133634-CDS-E-fasciculatus_F_contig14370:2948..3236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14370 2949..3236 +
1695995753.6238353-CDS-E-fasciculatus_F_contig14370:2948..32361695995753.6238353-CDS-E-fasciculatus_F_contig14370:2948..3236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14370 2949..3236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14370.3178.1

>prot_E-fasciculatus_F_contig14370.3178.1 ID=prot_E-fasciculatus_F_contig14370.3178.1|Name=mRNA_E-fasciculatus_F_contig14370.3178.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=263bp
RTWFSATPASSRRTSGEGVGASRPMRTRYKASTPSKHAATPSKGESVVLP
LQDIKVCIADALTQLFDDKKIVGDLVARMAGHATEANAKKAVLAAINSNS
KDFIAAAKNAGKEACAKHLEAPLANLAKTQARNGIEESAATTWKAASADA
ATKWKTAAQATAKGSAQKNTPQPSEAKLTAAAKAGAKANNDVMMTLVKAE
VANQVLQLKTELETRLTEMESSAKADLETRFGSLFTSIQCGLQNACEYIS
GVVKENGRQLDE*
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mRNA from alignment at E-fasciculatus_F_contig14370:991..3236+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14370.3178.1 ID=mRNA_E-fasciculatus_F_contig14370.3178.1|Name=mRNA_E-fasciculatus_F_contig14370.3178.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2246bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14370:991..3236+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCACTTGGTTCTCAGCTACTCCTGCGTCGAGCCGTAGGACATCGGGAGA
GGGCGTGGGGGCCAGTAGGCCGATGAGGACGCGCTACAAGGCCTCTACGC
CTTCGAAGCATGCGGCCACGCCGTCGAAGGGTGAATCTGTCGTCCTGCCC
CTACAAGACATCAAGGTCTGCATCGCTGACGCTTTGACGCAGTTGTTCGA
TGACAAGAAGATCGTCGGCGATTTGGTCGCAAGGATGGCGGGGCATGCGA
CCGAAGCGAATGCCAAGAAGGCAGTGCTGGCAGCCATCAACTCCAACTCC
AAGGACTTCATTGCTGCCGCCAAGAACGCCGGCAAGGAAGCATGCGCCAA
ACACCTAGAGGCACCCCTCGCCAACTTGGCGAAGACACAGGCGAGGAACG
GTATTGAGGTTGGGTGCATAGTATTGGGGTCCATCTCTTGGAGTTGTCTG
GTGCAATCGGCGCATACAAAAAACCAGTTGTAGGCGTTGGCGTACGCGGG
ACAAGGGATATGAATCTACAACCTGCCAAGAACCTAGGACGCGTACAAAT
ATCCCGCGTAACCACCCCCCGAATGCGGCCGCAGCACAATAAAACTTCGA
CATTATTCCGCGGCTACATCCCCGATTCTATTTGTTTTTGTTTCACCTCA
CCTCATTGTAGTTTGTCTTCGTTGCATAACCCCCCTACCTACCACACCAC
GATGCCCCGGTGCTTATTTTTATTTTTAACGATTTACATCCGCCTTGGGT
AGTGGGTGGTCACAGTATGGGGGGATTTATTTGCCAACTCTGCTGTAGCA
TGTTGGTGTTGCTCCAAACGGTGCTGCTCGTGCAGTGCATTGGTGAGGTC
TGTACCGGCCGGTAAACAGACCCTCATGGACATCTGTACGGTCTTGTCTC
GACCCTGTGAATCGTGGTATGTTGTCTGTGACACAGGAATCCGCTGCCAC
AACGTGGAAGGCCGCCTCCGCTGACGCGGCCACCAAGTGGAAGACCGCCG
CCCAAGCAACCGCGAAAGGGTCCGCACAGGTGACGACAAATGCGTTTATG
TCGTGCGTCGACGAACGGTTGCGGGGGCTGGTGACGATTATTCTGGTAAT
ATTCTTGAAGCACAGCAATCCCTACAAGTCGACGTCGCGGGGAAACCCTT
CGACCTCCACGCCTCGGAGCTTATTCTGGTTATACTCTTGAAGCACAGCA
ATCCATAAAAGTCGACGTCGCGGGGAAACCCTTCGACCTCCATGCCTCGG
GCAGGACGTTGACGGTAGGGCAAGGCGAAGAGTGTTGGTCTACTTACGTA
TCACACTCTCGTACTTCAGCATTTTGTTAAACCTCTACCCAACACCAGCC
TTCTTGTATGAGATCAACGGAAGTTTTCTCCTTTCAGATTGAACCCTCGT
GGAGGAAACCGCATTCGTTCCGCCCTAATATATGAACATGCGGGGCGATG
TTTCCGTTGGTTTTTCCTCCTCGCCCGTCATTACCTACGAGTTCGCCCTC
GTGGAATTTTGCGTAATGCATGTGGATGTGTGGGGTACATATGACTGTTT
ATATTTTTTCGTTGCGGATTTAGGCAGCACCGCTGTTGTTGCTGCTAGCG
TTGGCTGTTGTTGGATGGGCTGTACATGTCTGGCGTTGTGTTTTCCCGCG
CGGGAGGTGCTTGTGACAAGTGATGTATTCTTCCATGGAAGGTCCCGCGA
ACCGCAAAAATGGTGACGTGTCGCATGATTCGAGAACCCAGCCGCTCGAG
TCCTGAGGATCTGGAGAACGTACCCGTAAATACGAAAGATCACTCCCTAG
AAGCTGCGCTCGGGAGGAAAGCCGCAGCTCTCTCCGGATGCCTTGGACTT
TGTAAACCTCCAACCGAATAAATAAGAGAGGTGGCACCTTATGGCATATT
CCTCATTACTCGTCCGCCCCCCAACATCTCGTGCCGCCTGCCCAAACCGC
GTCCGTAGAAAAACACTCCGCAGCCGTCGGAAGCCAAGCTGACCGCGGCA
GCCAAGGCCGGCGCCAAGGCCAACAACGACGTCATGATGACCCTGGTCAA
GGCCGAGGTCGCAAACCAAGTACTGCAGCTGAAGACGGAGCTGGAGACAC
GTCTCACTGAAATGGAGAGCAGCGCCAAAGCCGACTTGGAGACGCGTTTT
GGGTCGCTGTTCACCAGCATCCAATGCGGCTTGCAGAACGCGTGCGAGTA
CATCAGCGGGGTCGTGAAGGAGAACGGCCGCCAGCTGGACGAGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14370:991..3236+

>mRNA_E-fasciculatus_F_contig14370.3178.1 ID=mRNA_E-fasciculatus_F_contig14370.3178.1|Name=mRNA_E-fasciculatus_F_contig14370.3178.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1578bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14370:991..3236+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGCACTTGGTTCTCAGCTACTCCTGCGTCGAGCCGTAGGACATCGGGAGA
GGGCGTGGGGGCCAGTAGGCCGATGAGGACGCGCTACAAGGCCTCTACGC
CTTCGAAGCATGCGGCCACGCCGTCGAAGGGTGAATCTGTCGTCCTGCCC
CTACAAGACATCAAGGTCTGCATCGCTGACGCTTTGACGCAGTTGTTCGA
TGACAAGAAGATCGTCGGCGATTTGGTCGCAAGGATGGCGGGGCATGCGA
CCGAAGCGAATGCCAAGAAGGCAGTGCTGGCAGCCATCAACTCCAACTCC
AAGGACTTCATTGCTGCCGCCAAGAACGCCGGCAAGGAAGCATGCGCCAA
ACACCTAGAGGCACCCCTCGCCAACTTGGCGAAGACACAGGCGAGGAACG
GTATTGAGCGCACTTGGTTCTCAGCTACTCCTGCGTCGAGCCGTAGGACA
TCGGGAGAGGGCGTGGGGGCCAGTAGGCCGATGAGGACGCGCTACAAGGC
CTCTACGCCTTCGAAGCATGCGGCCACGCCGTCGAAGGGTGAATCTGTCG
TCCTGCCCCTACAAGACATCAAGGTCTGCATCGCTGACGCTTTGACGCAG
TTGTTCGATGACAAGAAGATCGTCGGCGATTTGGTCGCAAGGATGGCGGG
GCATGCGACCGAAGCGAATGCCAAGAAGGCAGTGCTGGCAGCCATCAACT
CCAACTCCAAGGACTTCATTGCTGCCGCCAAGAACGCCGGCAAGGAAGCA
TGCGCCAAACACCTAGAGGCACCCCTCGCCAACTTGGCGAAGACACAGGC
GAGGAACGGTATTGAGGAATCCGCTGCCACAACGTGGAAGGCCGCCTCCG
CTGACGCGGCCACCAAGTGGAAGACCGCCGCCCAAGCAACCGCGAAAGGG
TCCGCACAGGAATCCGCTGCCACAACGTGGAAGGCCGCCTCCGCTGACGC
GGCCACCAAGTGGAAGACCGCCGCCCAAGCAACCGCGAAAGGGTCCGCAC
AGAAAAACACTCCGCAGCCGTCGGAAGCCAAGCTGACCGCGGCAGCCAAG
GCCGGCGCCAAGGCCAACAACGACGTCATGATGACCCTGGTCAAGGCCGA
GGTCGCAAACCAAGTACTGCAGCTGAAGACGGAGCTGGAGACACGTCTCA
CTGAAATGGAGAGCAGCGCCAAAGCCGACTTGGAGACGCGTTTTGGGTCG
CTGTTCACCAGCATCCAATGCGGCTTGCAGAACGCGTGCGAGTACATCAG
CGGGGTCGTGAAGGAGAACGGCCGCCAGCTGGACGAGTGAAAAAACACTC
CGCAGCCGTCGGAAGCCAAGCTGACCGCGGCAGCCAAGGCCGGCGCCAAG
GCCAACAACGACGTCATGATGACCCTGGTCAAGGCCGAGGTCGCAAACCA
AGTACTGCAGCTGAAGACGGAGCTGGAGACACGTCTCACTGAAATGGAGA
GCAGCGCCAAAGCCGACTTGGAGACGCGTTTTGGGTCGCTGTTCACCAGC
ATCCAATGCGGCTTGCAGAACGCGTGCGAGTACATCAGCGGGGTCGTGAA
GGAGAACGGCCGCCAGCTGGACGAGTGA
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