mRNA_E-fasciculatus_F_contig14352.3168.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14352.3168.1
Unique NamemRNA_E-fasciculatus_F_contig14352.3168.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14352.3168.1 vs. uniprot
Match: D7G5L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L8_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 9.430e-31
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 FAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQVSRQK 186
            FAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQ+S  K
Sbjct:  362 FAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQISVAK 423
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BLAST of mRNA_E-fasciculatus_F_contig14352.3168.1 vs. uniprot
Match: A0A6H5KMB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB3_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.310e-29
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 FAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQVSRQK 186
            FAQAI GLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQ+S  K
Sbjct:  199 FAQAINGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQISVAK 260
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BLAST of mRNA_E-fasciculatus_F_contig14352.3168.1 vs. uniprot
Match: A0A835YNU2_9STRA (Exocyst complex component Sec6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.740e-15
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 FAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQVSRQK 186
            FA+AI  LN+ YL RIKAQI+KWV NL+AQ  E+   ++G ++TT PDDMFNL+N+Q+S  K
Sbjct:  380 FAKAIVDLNSMYLKRIKAQIMKWVHNLKAQEPELIQSSDGKWLTTFPDDMFNLVNVQISVAK 441
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BLAST of mRNA_E-fasciculatus_F_contig14352.3168.1 vs. uniprot
Match: A0A8J2SHR9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHR9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 8.000e-6
Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    1 FAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQVS 177
            F +A   L A YL R+  Q+  W  N+RA+    +LD  G  VTT P+DMF ++ +QVS
Sbjct:  616 FNEAAEKLMAQYLARVGDQVEGWFGNIRAKKAAPRLDEHGRPVTTRPEDMFQIVQLQVS 674
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BLAST of mRNA_E-fasciculatus_F_contig14352.3168.1 vs. uniprot
Match: F0Y5W6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5W6_AURAN)

HSP 1 Score: 48.9 bits (115), Expect = 5.240e-5
Identity = 26/58 (44.83%), Postives = 32/58 (55.17%), Query Frame = 1 
Query:    1 FAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQV 174
            FA A   L   YL RI  Q+  W   +RA+  E + D  G  VTT P+DMF +I MQV
Sbjct:  565 FATAGAFLMGEYLDRIAKQVESWFVAIRARKAEPRADPAGRLVTTRPEDMFQVITMQV 622
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14352.3168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G5L8_ECTSI9.430e-3195.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMB3_9PHAE1.310e-2993.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNU2_9STRA8.740e-1558.06Exocyst complex component Sec6-domain-containing p... [more]
A0A8J2SHR9_9STRA8.000e-642.37Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y5W6_AURAN5.240e-544.83Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14352contigE-fasciculatus_F_contig14352:2171..2368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue1.3e-25
Seed eggNOG ortholog2880.D7G5L8
Preferred nameExoc3l2
KEGG koko:K06110,ko:K19988
EggNOG free text desc.exocyst localization
EggNOG OGsCOG5173@1,KOG2286@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExocyst complex component Sec6
Ec32 orthologEc-00_008950.1
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927924.7562408-CDS-E-fasciculatus_F_contig14352:2170..23681622927924.7562408-CDS-E-fasciculatus_F_contig14352:2170..2368Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14352 2171..2368 -
1695995753.1212244-CDS-E-fasciculatus_F_contig14352:2170..23681695995753.1212244-CDS-E-fasciculatus_F_contig14352:2170..2368Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14352 2171..2368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14352.3168.1prot_E-fasciculatus_F_contig14352.3168.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14352 2171..2368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14352.3168.1

>prot_E-fasciculatus_F_contig14352.3168.1 ID=prot_E-fasciculatus_F_contig14352.3168.1|Name=mRNA_E-fasciculatus_F_contig14352.3168.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
FAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDM
FNLINMQVSRQKQVV*
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mRNA from alignment at E-fasciculatus_F_contig14352:2171..2368-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14352.3168.1 ID=mRNA_E-fasciculatus_F_contig14352.3168.1|Name=mRNA_E-fasciculatus_F_contig14352.3168.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=198bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14352:2171..2368- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCGCGCAGGCCATCGGCGGTCTGAACGCCGCCTATCTCACCCGCATCAA
GGCGCAGATCATCAAGTGGGTGCAGAATCTTCGGGCGCAGCACCTGGAGG
TGCAGCTCGACGCCGAGGGCCACTACGTGACGACTCTACCAGACGACATG
TTCAACCTCATCAACATGCAGGTTAGTAGGCAGAAGCAAGTAGTCTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14352:2171..2368-

>mRNA_E-fasciculatus_F_contig14352.3168.1 ID=mRNA_E-fasciculatus_F_contig14352.3168.1|Name=mRNA_E-fasciculatus_F_contig14352.3168.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14352:2171..2368- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCGCGCAGGCCATCGGCGGTCTGAACGCCGCCTATCTCACCCGCATCAA
GGCGCAGATCATCAAGTGGGTGCAGAATCTTCGGGCGCAGCACCTGGAGG
TGCAGCTCGACGCCGAGGGCCACTACGTGACGACTCTACCAGACGACATG
TTCAACCTCATCAACATGCAGGTTAGTAGGCAGAAGCAAGTAGTCTAGTT
CGCGCAGGCCATCGGCGGTCTGAACGCCGCCTATCTCACCCGCATCAAGG
CGCAGATCATCAAGTGGGTGCAGAATCTTCGGGCGCAGCACCTGGAGGTG
CAGCTCGACGCCGAGGGCCACTACGTGACGACTCTACCAGACGACATGTT
CAACCTCATCAACATGCAGGTTAGTAGGCAGAAGCAAGTAGTCTAG
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