mRNA_E-fasciculatus_F_contig14347.3167.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14347.3167.1
Unique NamemRNA_E-fasciculatus_F_contig14347.3167.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14347.3167.1 vs. uniprot
Match: A0A6H5K4J4_9PHAE (Tr-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4J4_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 2.730e-75
Identity = 163/184 (88.59%), Postives = 165/184 (89.67%), Query Frame = 1 
Query:   16 MAESWEDIDKQTKKSGGGLNPSAASFSFNPAVASWSPGGAAXXXXXXXXXXPSPMQSAQAMAADKVGAVAEGMREVSISSAAPAXXXXXXXXXXXXXXXXXXXSKDQSEA---GGDAEEVDENDPLWKATLQVANGDRAKALKMLEDPDALMANPEINKIIAEGAASGDAALEDVEGQYPEQAG 558
            MAESWEDIDKQTKKSGGGLNP+AASFSFNPAVASWSPGGAA   XXXXXXX   MQSAQAMAADKVGAVAEGMREVSISS   A XXXXXXXXXXXXXXX   SKDQSE    GGDAEE+DENDPLWKATLQVANGDRAKALKMLEDPDALMANPEINKIIAEGA SGDAALE VEGQYPEQAG
Sbjct:    1 MAESWEDIDKQTKKSGGGLNPAAASFSFNPAVASWSPGGAAPTPXXXXXXXXXXMQSAQAMAADKVGAVAEGMREVSISS---APXXXXXXXXXXXXXXXAEDSKDQSEGAGDGGDAEEMDENDPLWKATLQVANGDRAKALKMLEDPDALMANPEINKIIAEGAVSGDAALEVVEGQYPEQAG 181
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14347.3167.1 vs. uniprot
Match: D7G008_ECTSI (Sup35, eukaryotic translation termination factor eRF3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G008_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 2.870e-73
Identity = 165/184 (89.67%), Postives = 168/184 (91.30%), Query Frame = 1 
Query:   16 MAESWEDIDKQTKKSGGGLNPSAASFSFNPAVASWSPGGAAXXXXXXXXXXPSPMQSAQAMAADKVGAVAEGMREVSISSAAPAXXXXXXXXXXXXXXXXXXXSKDQSEA---GGDAEEVDENDPLWKATLQVANGDRAKALKMLEDPDALMANPEINKIIAEGAASGDAALEDVEGQYPEQAG 558
            MAESWEDIDKQTKKSGGGLNP+AASFSFNPAVASWSPGGAA XXXXXXXXX    QSAQAMAADKVGAVAEGMREVSISS   A XXXXXXXXXXXXXXXX  SKDQSE    GGDAEE+DENDPLWKATLQVANGDRAKALKMLEDPDALMANPE+NKIIAEGAASGDAALE VEGQYPEQAG
Sbjct:    1 MAESWEDIDKQTKKSGGGLNPAAASFSFNPAVASWSPGGAAPXXXXXXXXXXXXXQSAQAMAADKVGAVAEGMREVSISS---APXXXXXXXXXXXXXXXXEESKDQSEGVGDGGDAEEMDENDPLWKATLQVANGDRAKALKMLEDPDALMANPEVNKIIAEGAASGDAALEVVEGQYPEQAG 181
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14347.3167.1 vs. uniprot
Match: A0A835YYC4_9STRA (Sup35, eukaryotic translation termination factor eRF3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYC4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.440e-16
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 1 
Query:   64 GGLNPSAASFSFNPAVASWSPGGAAXXXXXXXXXXPSPMQSAQAMAADKVGAVAEGMREVSISSAAPAXXXXXXXXXXXXXXXXXXXSKDQSEAGGDAEEVDENDPLWKATLQVANGDRAKALKMLEDPDALMANPEINKIIAEGAASGDAALED 528
            G LNP+A SF+FNP  ++W+P    XXXXXXX   P+ +++AQA A DKV    + +    I+S A                          E   D E +DE DPLW+ TL++A GDRA+A +MLE+PDALMA+PEI  +I   AA+ DAA ++
Sbjct:    8 GALNPNAKSFTFNPNASTWAPXX--XXXXXXXQSQPAAIRTAQAAATDKV---TDQLAAAKIASQA-------------------------GEGSDDEEPIDETDPLWQVTLRIAGGDRARAKRMLENPDALMAHPEIVAVIDATAAADDAAADE 132
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14347.3167.1 vs. uniprot
Match: A0A812YS44_SYMMI (SUP35 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YS44_SYMMI)

HSP 1 Score: 71.6 bits (174), Expect = 6.370e-12
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:  358 EEVDENDPLWKATLQVANGDRAKALKMLEDPDALMANPEINKIIAEGAAS 507
            EE+DENDPLWKATLQ+A GDR  ALK+LEDPDALM  PE+ K++ E  ++
Sbjct:   54 EEIDENDPLWKATLQIAKGDRKVALKLLEDPDALMQYPEVAKMMEEAEST 103
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14347.3167.1 vs. uniprot
Match: A0A6V1P3V7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P3V7_HETAK)

HSP 1 Score: 72.0 bits (175), Expect = 2.200e-11
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:  358 EEVDENDPLWKATLQVANGDRAKALKMLEDPDALMANPEINKIIAEG 498
            EE+DENDPLWK TLQ+A GDRA ALK+LEDPDALM+ PE+  ++  G
Sbjct:  122 EEIDENDPLWKVTLQLAGGDRAAALKLLEDPDALMSRPEVVAVLGSG 168
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14347.3167.1 vs. uniprot
Match: A0A7S1YMF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YMF6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.320e-8
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:  334 QSEAGGDAEEVDENDPLWKATLQVANGDRAKALKMLEDPDALMANPEINKIIAEGAASGDA 516
            +SE+G D   VDENDPLWK   ++A GDRAKALK++ DPD+L   PE+ + +A  +  GDA
Sbjct:    2 RSESGDD---VDENDPLWKIVFKIAEGDRAKALKLIGDPDSLTNYPEVVEFLA-SSEGGDA 58
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14347.3167.1 vs. uniprot
Match: A0A1Z5KGS5_FISSO (Peptide chain release factor subunit 3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGS5_FISSO)

HSP 1 Score: 62.0 bits (149), Expect = 5.930e-8
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:  358 EEVDENDPLWKATLQVANGDRAKALKMLEDPDALMANPEINKIIAEGAASGDAA 519
            +E+DE DPLW+A L++++GDR KALK++ +PD L A PEI KI+ E    GDAA
Sbjct:   41 DEIDEQDPLWQAVLKISDGDREKALKLINNPDELAAYPEIQKILEE--TGGDAA 92
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14347.3167.1 vs. uniprot
Match: A0A7S2DPN8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DPN8_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 8.160e-8
Identity = 25/45 (55.56%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:  343 AGGDAEEVDENDPLWKATLQVANGDRAKALKMLEDPDALMANPEI 477
            A  + +++DENDPLWK TL++A GDR +A+KML DPD+LM +P++
Sbjct:   49 AAEEEDDIDENDPLWKVTLEIAGGDRDRAIKMLGDPDSLMKHPQV 93
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14347.3167.1 vs. uniprot
Match: A0A7R9WBC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WBC9_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.580e-7
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:  361 EVDENDPLWKATLQVANGDRAKALKMLEDPDALMANPEINKIIAEGAASG 510
            ++DENDPLWK  L++A GDR +A++M+ DPD L   PE++ ++ + AA G
Sbjct:   45 DIDENDPLWKVVLKIAEGDRDRAMRMIADPDCLAQYPEVDAVLEQMAAEG 94
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14347.3167.1 vs. uniprot
Match: A0A7S2KHT6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KHT6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 6.420e-5
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:  361 EVDENDPLWKATL-QVANGDRAKALKMLEDPDALMANPEINKIIAEGAA 504
            ++DE+DPLW+  L ++ NGDR +ALK++ DPD L   PE+  I+A G A
Sbjct:   41 DIDESDPLWQVVLTKICNGDRDRALKLINDPDQLTQYPEVEAILAAGDA 89
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14347.3167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K4J4_9PHAE2.730e-7588.59Tr-type G domain-containing protein n=1 Tax=Ectoca... [more]
D7G008_ECTSI2.870e-7389.67Sup35, eukaryotic translation termination factor e... [more]
A0A835YYC4_9STRA3.440e-1641.94Sup35, eukaryotic translation termination factor e... [more]
A0A812YS44_SYMMI6.370e-1266.00SUP35 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A6V1P3V7_HETAK2.200e-1168.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1YMF6_9STRA3.320e-852.46Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A1Z5KGS5_FISSO5.930e-855.56Peptide chain release factor subunit 3 n=2 Tax=Fis... [more]
A0A7S2DPN8_9STRA8.160e-855.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9WBC9_9STRA3.580e-748.00Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2KHT6_9STRA6.420e-548.98Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14347contigE-fasciculatus_F_contig14347:834..3354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.5
Seed ortholog evalue9.4e-63
Seed eggNOG ortholog2880.D7G008
Preferred nameSUP35
KEGG koko:K03267
KEGG Pathwayko03015,map03015
GOsGO:0000166,GO:0000287,GO:0000288,GO:0000956,GO:0001882,GO:0001883,GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003747,GO:0003824,GO:0003924,GO:0005085,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006415,GO:0006464,GO:0006479,GO:0006518,GO:0006725,GO:0006807,GO:0008022,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0008213,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018444,GO:0019001,GO:0019003,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0022411,GO:0032259,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0034655,GO:0035639,GO:0035770,GO:0036094,GO:0036211,GO:0036464,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043414,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0046872,GO:0048519,GO:0050789,GO:0051020,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0098772,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG5256@1,KOG0459@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSup35, eukaryotic translation termination factor eRF3
Ec32 orthologEc-22_003380.1
Exons3
Model size559
Cds size543
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14347.3167.1prot_E-fasciculatus_F_contig14347.3167.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14347 849..3354 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927924.6571627-UTR-E-fasciculatus_F_contig14347:833..8481622927924.6571627-UTR-E-fasciculatus_F_contig14347:833..848Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14347 834..848 +
1695995753.0695803-UTR-E-fasciculatus_F_contig14347:833..8481695995753.0695803-UTR-E-fasciculatus_F_contig14347:833..848Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14347 834..848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927924.6766524-CDS-E-fasciculatus_F_contig14347:848..9991622927924.6766524-CDS-E-fasciculatus_F_contig14347:848..999Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14347 849..999 +
1695995753.0813808-CDS-E-fasciculatus_F_contig14347:848..9991695995753.0813808-CDS-E-fasciculatus_F_contig14347:848..999Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14347 849..999 +
1622927924.6884482-CDS-E-fasciculatus_F_contig14347:1919..21431622927924.6884482-CDS-E-fasciculatus_F_contig14347:1919..2143Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14347 1920..2143 +
1695995753.0907254-CDS-E-fasciculatus_F_contig14347:1919..21431695995753.0907254-CDS-E-fasciculatus_F_contig14347:1919..2143Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14347 1920..2143 +
1622927924.7073998-CDS-E-fasciculatus_F_contig14347:3186..33541622927924.7073998-CDS-E-fasciculatus_F_contig14347:3186..3354Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14347 3187..3354 +
1695995753.1021302-CDS-E-fasciculatus_F_contig14347:3186..33541695995753.1021302-CDS-E-fasciculatus_F_contig14347:3186..3354Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14347 3187..3354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14347.3167.1

>prot_E-fasciculatus_F_contig14347.3167.1 ID=prot_E-fasciculatus_F_contig14347.3167.1|Name=mRNA_E-fasciculatus_F_contig14347.3167.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=181bp
MAESWEDIDKQTKKSGGGLNPSAASFSFNPAVASWSPGGAAAAPAAAAAA
APSPMQSAQAMAADKVGAVAEGMREVSISSAAPAATGAAAAAAAASGGGG
AEESKDQSEAGGDAEEVDENDPLWKATLQVANGDRAKALKMLEDPDALMA
NPEINKIIAEGAASGDAALEDVEGQYPEQAG
back to top

mRNA from alignment at E-fasciculatus_F_contig14347:834..3354+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14347.3167.1 ID=mRNA_E-fasciculatus_F_contig14347.3167.1|Name=mRNA_E-fasciculatus_F_contig14347.3167.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2521bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14347:834..3354+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAGCAGGCATCATCATGGCGGAGAGCTGGGAAGACATCGACAAGCAAAC
GAAAAAGTCAGGGGGTGGGCTCAACCCCAGTGCGGCTTCTTTCAGCTTTA
ACCCGGCGGTCGCGTCGTGGAGCCCGGGAGGAGCGGCGGCGGCCCCCGCA
GCAGCAGCGGCAGCAGGTGTGTGTGTGGCAGCAAATCTGTCGAACTGATG
ATCGTCTCACGCATCATTCGATTTTGTGGCCCTAACGAGGGATGCTTGCC
CAGCACCGGAGGTTGCTTCGGTGTGCCCTCCTGGTTACGTCCAGGCTTGC
GGAAGTCGATGCTAGTGGTTGTTGGCTCGTGCCTATTTTTTGTTTGCCCA
CTGGTGGAGGAGGAACGGCCATGGTTATGATCGAACGTGTTGGCATGGTT
TTGGAAAATTGCAGCTGCTGTTTGTTGTCACCGGAACATTCGACGTAGAC
AGACATTTATCTACATGCACGAAAGGGCCCGGCGAACAAAATAATATCAT
TAGCCTGAGACTTGGCGGCAACAATTTACCGACATCGTCGTGCCAAGCAG
TAAAGTAACGACGACGAGGAGAGGTTGAGGGTGATTCAATTCACTTGGCT
GGGCCGTGAGAAGAACACTTGAATTCATAGACAATACTTCGTATCAAGTG
TAATCCTGTGAAGCATGCACAGCAGCAGTGGAGCCGGAAGCGCTGAGTGA
TCCTGCGGAAACGCTAAACTTTTCTCTCTGCGTTTTCCAAAGAATGACGA
ACACTGCAGGCGGAAGGAAACAAAGTAGGGCAAACCAAAAACAAGGAGAC
GCCTCGGTTTTGTTCCTCCTGTGTGATGACCCCGGCTGATTGCGTCAAAA
ATAGAAAAATAGTGTAGACTTGGCGCCGAAATAGAAGTATTTTGTCGAAC
GAACGGGTAATAATAGTTCTCTGTTTCTACAAATAAAAACCCTCGGTGAT
TGCAATTAAAAAAAACCTTACTGCTGTTGCTTGCAGGGACGAACACACGA
AAGGCGAGGCGCTGACTTTCTACCCCATCCCTCCTCCCGTAATGTGCTGC
GCGGCGCGCCCCTTGAATTGCCTCTGCCGCTAGCAGCCCCAAGCCCCATG
CAGTCAGCTCAGGCCATGGCCGCCGACAAGGTCGGCGCTGTTGCCGAGGG
CATGCGAGAAGTCAGCATAAGCTCCGCGGCGCCGGCGGCAACAGGAGCAG
CAGCAGCAGCAGCAGCAGCATCAGGTGGAGGGGGTGCGGAGGAGTCCAAG
GACCAGTCCGAAGCAGGGGGTGACGCGGAGGAGGTGGATGAGAACGACCC
CCTGTGGAAAGTGAGTAGATAGCGCGGGCGCCCCTTCTAACACCGGTCGG
CTAGCTAGCGCCAGTGGCGGTGGTGAACTTGCCGGGCACAGACTGAATCA
ACAAGTCTTTCATGTCGCTATTTAACTATTTAACGGTCTCTCTGAATGGC
GCCTGTCGATGCGCCGGCCACATACCGGCGTTATTTGATAGCCTCCCACT
ACTGTATGCATTTTGTAGATCCCTTGAGGAGATAAAGAATGTTAGAGCTG
TTAACCACGGTCTTGCCTCCACGCAGCAGGGGCGACGCAACCTGCGGAGA
GCTCCTGTGACATAGTGCCACCGTTAGACTAGACCGGATATTATGCAAAG
ACGAGAGGGGCCGGGGTGGAAATGCCGGGGGTGCTGTAGTGCGTACCTGC
TGTAACGGCGAGGTACATAGCATGTGGCGATGATAAGTCAGCCGCGCGCG
TAGGCGAACCCCTCTACCGACTTCCGGTAGGCGTTGTGCGTCGGGAGTAG
CCCACAGCGCGTTAGCACGAACGGAACGTGAACGTGAGGTATGCCCCCAA
CGGGGATACAGCAGCAAGAGAATCATCGTCCCTACTTGACGTGCGTACGG
CCCTCTTGTTGTTCCTGATGGGTCTGCTGCCATGGTAGTCTATAATAGTC
ACGATCACAGATCACACCCATGGTGACGGTGGTACAATACCATCCGCTTG
TCATATATCCACACGTATGGATACGACTGTCTCGCGCTGAACCAACCCAC
TCCACAACAACAGCAGCCACGACCAACCAACAGCAGCAATAAATAGCAAC
AACCAACAGGCCACGCTCCAAGTTTCATGCAAGCGAACCCCTCTACGGCC
CTCCGGCAGTCAGCGAGTAGGCGGTGTGCGTCGGGAGTGGACGTACGTGA
GTTAGAGTTAGATATTCCCCAACAACAACCAGCACCACCACACTAAACCG
ATGTACATGAACACTTTGAGCGATTCCCAACCACGCGGTTTAGAGTGCAA
CAAGAACAACAGCTACTCGATTGTACAACAACTACAACGACGGCGTTCAA
CAGGCGACACTCCAAGTCGCGAACGGGGACCGCGCCAAGGCCCTCAAGAT
GCTCGAAGACCCCGATGCGCTCATGGCCAACCCCGAAATCAACAAGATCA
TCGCGGAGGGAGCGGCATCGGGAGACGCAGCCCTGGAGGATGTGGAAGGG
CAGTACCCGGAACAAGCGGGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14347:834..3354+

>mRNA_E-fasciculatus_F_contig14347.3167.1 ID=mRNA_E-fasciculatus_F_contig14347.3167.1|Name=mRNA_E-fasciculatus_F_contig14347.3167.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1086bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14347:834..3354+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGAGAGCTGGGAAGACATCGACAAGCAAACGAAAAAGTCAGGGGG
TGGGCTCAACCCCAGTGCGGCTTCTTTCAGCTTTAACCCGGCGGTCGCGT
CGTGGAGCCCGGGAGGAGCGGCGGCGGCCCCCGCAGCAGCAGCGGCAGCA
GATGGCGGAGAGCTGGGAAGACATCGACAAGCAAACGAAAAAGTCAGGGG
GTGGGCTCAACCCCAGTGCGGCTTCTTTCAGCTTTAACCCGGCGGTCGCG
TCGTGGAGCCCGGGAGGAGCGGCGGCGGCCCCCGCAGCAGCAGCGGCAGC
AGCCCCAAGCCCCATGCAGTCAGCTCAGGCCATGGCCGCCGACAAGGTCG
GCGCTGTTGCCGAGGGCATGCGAGAAGTCAGCATAAGCTCCGCGGCGCCG
GCGGCAACAGGAGCAGCAGCAGCAGCAGCAGCAGCATCAGGTGGAGGGGG
TGCGGAGGAGTCCAAGGACCAGTCCGAAGCAGGGGGTGACGCGGAGGAGG
TGGATGAGAACGACCCCCTGTGGAAACCCCAAGCCCCATGCAGTCAGCTC
AGGCCATGGCCGCCGACAAGGTCGGCGCTGTTGCCGAGGGCATGCGAGAA
GTCAGCATAAGCTCCGCGGCGCCGGCGGCAACAGGAGCAGCAGCAGCAGC
AGCAGCAGCATCAGGTGGAGGGGGTGCGGAGGAGTCCAAGGACCAGTCCG
AAGCAGGGGGTGACGCGGAGGAGGTGGATGAGAACGACCCCCTGTGGAAA
GCGACACTCCAAGTCGCGAACGGGGACCGCGCCAAGGCCCTCAAGATGCT
CGAAGACCCCGATGCGCTCATGGCCAACCCCGAAATCAACAAGATCATCG
CGGAGGGAGCGGCATCGGGAGACGCAGCCCTGGAGGATGTGGAAGGGCAG
TACCCGGAACAAGCGGGGGCGACACTCCAAGTCGCGAACGGGGACCGCGC
CAAGGCCCTCAAGATGCTCGAAGACCCCGATGCGCTCATGGCCAACCCCG
AAATCAACAAGATCATCGCGGAGGGAGCGGCATCGGGAGACGCAGCCCTG
GAGGATGTGGAAGGGCAGTACCCGGAACAAGCGGGG
back to top