mRNA_E-fasciculatus_F_contig14343.3163.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14343.3163.1
Unique NamemRNA_E-fasciculatus_F_contig14343.3163.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14343.3163.1 vs. uniprot
Match: A0A6H5KF55_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF55_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 1.280e-69
Identity = 174/257 (67.70%), Postives = 186/257 (72.37%), Query Frame = 1 
Query:   22 ARGVAAGDPQVTPGRIGVSGGXXXXXXMTVMDVMRESEKAVMSETMTSAEAVLATAGLSTKDKDEAVVVPSGQYRHRHRRMGGVLGSESSFSSNC-------RSDLVPSDDAQFGDHDEDWPRAPNSPNASPYMDNHVDLDGEDXXXXXXXXXXXIPVHYGXXXXR-RGQVQ-RGDEEGLLALLPRRGVAGDPMEEXXXXXXXXXXXXXXXQARVEEHCRXXXXXXXXXXXXXXSMKRE-SAKQEELGPETEDEDLA 762
            ARGVAAGD QVTPGRIGVSG XXXXX MTVMDVMRESEKAVMSETMTSAEAVLA+AGLSTKD    +VVP+GQYR    RMGGVLGSESSFSSN        RSDLVPSDDAQFGDHDEDW R PNSPNASPY++NHVDLDG+  XXXXXXXX  IPVHYG      RGQ +  GD+EG+LALLPRR VA DPMEE               QA  EEHC               S+KRE SA  +ELGPETEDE+LA
Sbjct:  505 ARGVAAGDSQVTPGRIGVSG-XXXXXGMTVMDVMRESEKAVMSETMTSAEAVLASAGLSTKDS--TLVVPAGQYR----RMGGVLGSESSFSSNDSPGSTGGRSDLVPSDDAQFGDHDEDWARPPNSPNASPYIENHVDLDGD--XXXXXXXXGTIPVHYGADECHGRGQREDEGDDEGMLALLPRR-VARDPMEEDFDDDDASDGDDEG-QAIAEEHCSGGAGGGP-------SIKRELSAMVQELGPETEDEELA 743
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BLAST of mRNA_E-fasciculatus_F_contig14343.3163.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 5.910e-39
Identity = 128/208 (61.54%), Postives = 139/208 (66.83%), Query Frame = 1 
Query:  169 EAVLATAGLSTKDKDEAVVVPSGQYRHRHRRMGGVLGSESSFSSNC-------RSDLVPSDDAQFGDHDEDWPRAPNSPNASPYMDNHVDLDGEDXXXXXXXXXXXIPVHYGXXXXRRGQVQRGDEEGLL--ALLPRRGVAGDPMEEXXXXXXXXXXXXXXXQARVEEHCRXXXXXXXXXXXXXXSMKRE-SAKQEELGPETEDEDLA 762
            +AVLA+AGLSTKD    VVVP+GQYR    RMGGVLGSESSFSSN        RSDLVPSDDAQFGDHDEDW   PNSPNASPYM+NHVDLDG+    XXXXXX  IPVH+G    +  Q +          ALLPRR VA DP   XXXXXXXXXXXXXXX      HC               S+KRE SAK++ELGPETEDEDLA
Sbjct: 2199 QAVLASAGLSTKDS--TVVVPAGQYR----RMGGVLGSESSFSSNDSPGSTGGRSDLVPSDDAQFGDHDEDWAPPPNSPNASPYMENHVDLDGD----XXXXXXGTIPVHFGANECKGRQREEXXXXXXXXXALLPRR-VARDPXXXXXXXXXXXXXXXXXXXXXXXXHCSGGDGGGPSGP----SIKRELSAKEQELGPETEDEDLA 2391
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14343.3163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KF55_9PHAE1.280e-6967.70USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FK75_ECTSI5.910e-3961.54Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14343contigE-fasciculatus_F_contig14343:1095..3334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue3.3e-35
Seed eggNOG ortholog2880.D7FK75
KEGG koko:K11840,ko:K11853,ko:K11869
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-related domain
Ec32 orthologEc-17_003030.1
Exons4
Model size820
Cds size819
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14343.3163.1prot_E-fasciculatus_F_contig14343.3163.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14343 1095..3334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927924.3700411-CDS-E-fasciculatus_F_contig14343:1094..15981622927924.3700411-CDS-E-fasciculatus_F_contig14343:1094..1598Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14343 1095..1598 -
1695995752.970578-CDS-E-fasciculatus_F_contig14343:1094..15981695995752.970578-CDS-E-fasciculatus_F_contig14343:1094..1598Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14343 1095..1598 -
1622927924.3847365-CDS-E-fasciculatus_F_contig14343:2089..22331622927924.3847365-CDS-E-fasciculatus_F_contig14343:2089..2233Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14343 2090..2233 -
1695995752.980994-CDS-E-fasciculatus_F_contig14343:2089..22331695995752.980994-CDS-E-fasciculatus_F_contig14343:2089..2233Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14343 2090..2233 -
1622927924.4000087-CDS-E-fasciculatus_F_contig14343:2647..27671622927924.4000087-CDS-E-fasciculatus_F_contig14343:2647..2767Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14343 2648..2767 -
1695995752.9900434-CDS-E-fasciculatus_F_contig14343:2647..27671695995752.9900434-CDS-E-fasciculatus_F_contig14343:2647..2767Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14343 2648..2767 -
1622927924.4271908-CDS-E-fasciculatus_F_contig14343:3283..33341622927924.4271908-CDS-E-fasciculatus_F_contig14343:3283..3334Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14343 3284..3334 -
1695995752.9998257-CDS-E-fasciculatus_F_contig14343:3283..33341695995752.9998257-CDS-E-fasciculatus_F_contig14343:3283..3334Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14343 3284..3334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14343.3163.1

>prot_E-fasciculatus_F_contig14343.3163.1 ID=prot_E-fasciculatus_F_contig14343.3163.1|Name=mRNA_E-fasciculatus_F_contig14343.3163.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=273bp
AGGGASAARGVAAGDPQVTPGRIGVSGGGGGGGGMTVMDVMRESEKAVMS
ETMTSAEAVLATAGLSTKDKDEAVVVPSGQYRHRHRRMGGVLGSESSFSS
NCRSDLVPSDDAQFGDHDEDWPRAPNSPNASPYMDNHVDLDGEDDDDDDE
DDDGTIPVHYGGDDERRGQVQRGDEEGLLALLPRRGVAGDPMEEDDFGDD
DASDGDDEGQARVEEHCRGGGGGNGGGPSGGPSMKRESAKQEELGPETED
EDLAGGGGLGSRSTSPSSSSSSS
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mRNA from alignment at E-fasciculatus_F_contig14343:1095..3334-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14343.3163.1 ID=mRNA_E-fasciculatus_F_contig14343.3163.1|Name=mRNA_E-fasciculatus_F_contig14343.3163.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2240bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14343:1095..3334- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGGCGGCGGCGCCAGTGCGGCTCGGGGAGTGGCGGCCGGGGATCCGCA
GGTGTGGTTGGATGCGACGTCGCTGTTGCTGTGTTTATTTATTTTTTAGG
TTATAGTTTTGGGTTGGTGGAAGTAGTGGTGGTGGCGGCGGCGGCGGCAT
ATGGTGCTGTCGTTGTGTGGATGTTCATGTCCGTATCGGGCTCTGGGGAA
ATGTACGGCCTGTGCATGCAATCTCACGCCACGTTGGTACTTTTTGCGGG
AGATGAGAATCAGCGACGATCGGAAAAAGGGGAAGGAAAGAGGGGCGACG
ACGAACATTCTTGGTGCTTTCTTTCAATGCCCGACTGATTGATAGTCTTG
CCGCGAAATTTGGAGCGATCGTGGTTGTTTTTGTTGTTGTATCTGTTGTT
GTTCTTGAGCCATGTTGTATTTTTGGCCGAAACTATTTTTTTTGTCGGGA
GAACCCCCCGCCACCTTTATCGCGCGTTGTACGCTGGTGCCACTGCTGCT
GCTGCTGCTGAATCTGCTGCTGCTGCCGCTGCCGCCGCTGTTGCTCCCCG
ATTGCGTCGTATGCTAGGTGACGCCGGGTCGAATAGGGGTCAGCGGGGGC
GGCGGCGGCGGGGGCGGCATGACAGTCATGGACGTCATGCGCGAGTCCGA
GAAGGCCGTGATGTCGGAAACCATGACGTCTGCGGAGGTAGACACATGGG
GCGATGCTTCTCTAGGCTAAATAATTGTTTGTCAAACGCGCGTGACTTAC
GAGCGCATTTTATGAAGAGGCGGGATTGATCTCCCGATGGGCGACCTCCG
CAAATGTGTATACACGATTGGGTGCCCTCAATAGTGCGGGTATGTGCCAA
GCGCTGTCACCCGCACTATAGCGGACACCCGCACTATTCAATGTATTAAG
CTATCTTGATTATATTTCCTATCTGTGCCAGCCAATTCCATTCCACACGC
GCATATACCGGGCACCCGCACTGCTGTAGGGGGCGCGCCCGATTTACTGT
TGTAGATTCGTTTCTTTTCGACAGAAATGATGCACCAAGCACAACTGCTG
GTTCGTGAGCAACAATCGTATTTTTTCTCGCGCTGCTGCGGCGTACCGCA
GGCAGTCTTGGCCACCGCTGGGTTATCGACCAAGGACAAGGACGAGGCGG
TGGTAGTGCCGTCGGGGCAGTATCGACATCGACATCGACGGATGGGAGGA
GTGTTGGGCTCGGAATCGTCCTTCTCGTCGAACTGCAGATCTGATGTATG
TCTGCCTTCTTTCTTGTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTCTCTCCTAGTATAGACACAACGAATCCATCTCT
ATCCAGAAATGGGAGTCCAGGATAAATTTGCAATGAATCCGCAGCGTTGT
CTTATTTTGTATTTTCGTATTTTCTGCACACTGCTGTGTTGTTACTACTT
GTACGCAACTTTTATTCGTTTCTGGAATGTAACGAGTTATATACATATAT
ATATATTTTTGCATGCGTTTCGTCTTCGGTGTTTTTCGGTGTTTATGGCT
TGTCATACTGAAGTCAGTTTTCTTTTAGCATCCCGTAGAGAAATATCGGC
GTGTGCGATGCAGAAGGCTATACACCGTTACCGCCGCCCCGCCGCAAATC
CGAAAACATCGTGAGAGAGACATGCCCGAGTTACCCGATGACAAAACAAT
AGTAGTTGCCCTTTCGACGTGACCCCCGATTTTCAGCTCGTTCCCAGCGA
CGACGCCCAGTTCGGCGATCACGACGAGGACTGGCCGCGCGCGCCCAACT
CCCCCAACGCCTCCCCGTACATGGACAACCACGTCGATCTCGATGGCGAG
GACGACGACGACGACGACGAAGACGACGACGGTACGATTCCGGTGCACTA
CGGCGGGGATGATGAGCGCAGAGGCCAGGTTCAGAGAGGTGACGAGGAAG
GGCTGCTGGCGCTGTTGCCGAGGAGGGGGGTAGCAGGAGATCCGATGGAG
GAAGACGACTTCGGCGACGACGACGCTAGCGATGGAGACGACGAGGGACA
GGCTAGAGTAGAAGAGCACTGTCGTGGTGGTGGTGGTGGCAATGGCGGAG
GCCCGTCGGGGGGGCCGTCGATGAAGCGGGAGTCCGCGAAGCAGGAAGAG
CTGGGACCGGAGACAGAGGACGAGGACCTCGCGGGAGGGGGGGGGCTTGG
TAGCCGATCAACGTCTCCGTCGTCGTCGTCATCGTCTTCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14343:1095..3334-

>mRNA_E-fasciculatus_F_contig14343.3163.1 ID=mRNA_E-fasciculatus_F_contig14343.3163.1|Name=mRNA_E-fasciculatus_F_contig14343.3163.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1638bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14343:1095..3334- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGGCGGCGGCGCCAGTGCGGCTCGGGGAGTGGCGGCCGGGGATCCGCA
GGCCGGCGGCGGCGCCAGTGCGGCTCGGGGAGTGGCGGCCGGGGATCCGC
AGGTGACGCCGGGTCGAATAGGGGTCAGCGGGGGCGGCGGCGGCGGGGGC
GGCATGACAGTCATGGACGTCATGCGCGAGTCCGAGAAGGCCGTGATGTC
GGAAACCATGACGTCTGCGGAGGTGACGCCGGGTCGAATAGGGGTCAGCG
GGGGCGGCGGCGGCGGGGGCGGCATGACAGTCATGGACGTCATGCGCGAG
TCCGAGAAGGCCGTGATGTCGGAAACCATGACGTCTGCGGAGGCAGTCTT
GGCCACCGCTGGGTTATCGACCAAGGACAAGGACGAGGCGGTGGTAGTGC
CGTCGGGGCAGTATCGACATCGACATCGACGGATGGGAGGAGTGTTGGGC
TCGGAATCGTCCTTCTCGTCGAACTGCAGATCTGATGCAGTCTTGGCCAC
CGCTGGGTTATCGACCAAGGACAAGGACGAGGCGGTGGTAGTGCCGTCGG
GGCAGTATCGACATCGACATCGACGGATGGGAGGAGTGTTGGGCTCGGAA
TCGTCCTTCTCGTCGAACTGCAGATCTGATCTCGTTCCCAGCGACGACGC
CCAGTTCGGCGATCACGACGAGGACTGGCCGCGCGCGCCCAACTCCCCCA
ACGCCTCCCCGTACATGGACAACCACGTCGATCTCGATGGCGAGGACGAC
GACGACGACGACGAAGACGACGACGGTACGATTCCGGTGCACTACGGCGG
GGATGATGAGCGCAGAGGCCAGGTTCAGAGAGGTGACGAGGAAGGGCTGC
TGGCGCTGTTGCCGAGGAGGGGGGTAGCAGGAGATCCGATGGAGGAAGAC
GACTTCGGCGACGACGACGCTAGCGATGGAGACGACGAGGGACAGGCTAG
AGTAGAAGAGCACTGTCGTGGTGGTGGTGGTGGCAATGGCGGAGGCCCGT
CGGGGGGGCCGTCGATGAAGCGGGAGTCCGCGAAGCAGGAAGAGCTGGGA
CCGGAGACAGAGGACGAGGACCTCGCGGGAGGGGGGGGGCTTGGTAGCCG
ATCAACGTCTCCGTCGTCGTCGTCATCGTCTTCGCTCGTTCCCAGCGACG
ACGCCCAGTTCGGCGATCACGACGAGGACTGGCCGCGCGCGCCCAACTCC
CCCAACGCCTCCCCGTACATGGACAACCACGTCGATCTCGATGGCGAGGA
CGACGACGACGACGACGAAGACGACGACGGTACGATTCCGGTGCACTACG
GCGGGGATGATGAGCGCAGAGGCCAGGTTCAGAGAGGTGACGAGGAAGGG
CTGCTGGCGCTGTTGCCGAGGAGGGGGGTAGCAGGAGATCCGATGGAGGA
AGACGACTTCGGCGACGACGACGCTAGCGATGGAGACGACGAGGGACAGG
CTAGAGTAGAAGAGCACTGTCGTGGTGGTGGTGGTGGCAATGGCGGAGGC
CCGTCGGGGGGGCCGTCGATGAAGCGGGAGTCCGCGAAGCAGGAAGAGCT
GGGACCGGAGACAGAGGACGAGGACCTCGCGGGAGGGGGGGGGCTTGGTA
GCCGATCAACGTCTCCGTCGTCGTCGTCATCGTCTTCG
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