mRNA_E-fasciculatus_F_contig14332.3158.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14332.3158.1
Unique NamemRNA_E-fasciculatus_F_contig14332.3158.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14332.3158.1 vs. uniprot
Match: D8LDC6_ECTSI (Eukaryotic initiation factor 4E n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDC6_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.060e-21
Identity = 43/49 (87.76%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 SIQSEADPEVCGLVVSLRKGQHRIALWTKTCEEARVVPVAKKLKEALKV 147
            +++SE DPEVCGLVVSLRKGQHRIALWTKTCEE+RVVPVAKKLKEALK+
Sbjct:  125 TLESETDPEVCGLVVSLRKGQHRIALWTKTCEESRVVPVAKKLKEALKL 173
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14332.3158.1 vs. uniprot
Match: K0T9U8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T9U8_THAOC)

HSP 1 Score: 48.1 bits (113), Expect = 4.170e-5
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   16 ADPEVCGLVVSLRKGQHRIALWTKTCEEARVVPVAKKLKEALKV 147
            A  EVCG VVS+RKGQ RIALW K+C+      V  + K+ L+V
Sbjct:  177 AGDEVCGCVVSIRKGQDRIALWLKSCDRKACTEVGARWKKCLEV 220
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14332.3158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDC6_ECTSI1.060e-2187.76Eukaryotic initiation factor 4E n=2 Tax=Ectocarpus... [more]
K0T9U8_THAOC4.170e-552.27Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14332contigE-fasciculatus_F_contig14332:3147..3293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue8e-17
Seed eggNOG ortholog2880.D8LDC6
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5053@1,KOG1670@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptioneukaryotic initiation factor 4E
Ec32 orthologEc-25_001750.1
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927923.9147196-CDS-E-fasciculatus_F_contig14332:3146..32931622927923.9147196-CDS-E-fasciculatus_F_contig14332:3146..3293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14332 3147..3293 -
1695995752.7470844-CDS-E-fasciculatus_F_contig14332:3146..32931695995752.7470844-CDS-E-fasciculatus_F_contig14332:3146..3293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14332 3147..3293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14332.3158.1prot_E-fasciculatus_F_contig14332.3158.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14332 3147..3293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14332.3158.1

>prot_E-fasciculatus_F_contig14332.3158.1 ID=prot_E-fasciculatus_F_contig14332.3158.1|Name=mRNA_E-fasciculatus_F_contig14332.3158.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=49bp
SIQSEADPEVCGLVVSLRKGQHRIALWTKTCEEARVVPVAKKLKEALKV
back to top

mRNA from alignment at E-fasciculatus_F_contig14332:3147..3293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14332.3158.1 ID=mRNA_E-fasciculatus_F_contig14332.3158.1|Name=mRNA_E-fasciculatus_F_contig14332.3158.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=147bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14332:3147..3293- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCATTCAGTCGGAGGCCGATCCGGAGGTGTGCGGCCTAGTCGTAAGCCT
GCGAAAGGGGCAGCACCGCATAGCGCTCTGGACGAAAACCTGCGAGGAGG
CGAGGGTGGTGCCGGTGGCAAAGAAGCTTAAAGAAGCCCTCAAGGTG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14332:3147..3293-

>mRNA_E-fasciculatus_F_contig14332.3158.1 ID=mRNA_E-fasciculatus_F_contig14332.3158.1|Name=mRNA_E-fasciculatus_F_contig14332.3158.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=294bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14332:3147..3293- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCATTCAGTCGGAGGCCGATCCGGAGGTGTGCGGCCTAGTCGTAAGCCT
GCGAAAGGGGCAGCACCGCATAGCGCTCTGGACGAAAACCTGCGAGGAGG
CGAGGGTGGTGCCGGTGGCAAAGAAGCTTAAAGAAGCCCTCAAGGTGTCC
ATTCAGTCGGAGGCCGATCCGGAGGTGTGCGGCCTAGTCGTAAGCCTGCG
AAAGGGGCAGCACCGCATAGCGCTCTGGACGAAAACCTGCGAGGAGGCGA
GGGTGGTGCCGGTGGCAAAGAAGCTTAAAGAAGCCCTCAAGGTG
back to top