mRNA_E-fasciculatus_F_contig1433.3155.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1433.3155.1 vs. uniprot
Match: D7FYC3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYC3_ECTSI) HSP 1 Score: 1782 bits (4615), Expect = 0.000e+0 Identity = 978/1165 (83.95%), Postives = 1020/1165 (87.55%), Query Frame = 1
Query: 1 MASSFAHLRQRFRLASFVGWHSRLADGPKYVSLSALKAAFGVAGVVLTEDEVGYLVKKFADNRRRIDWRRLMIALDVGPPADFTDPDRSFLDNLPQPYRLIVSVLDTEIVDRAWELIVERHPELDTSPADEARAAADIDLKRSCRPSVRLLDPHPPLLAQAGDTTPVAAAANEGAAIAVDRSVDGTGSSELLVEGNNSNGDADXXXXXGENDAGNVSAMQWDSRGQLLFTGGHDGSVCVRLAGALKEIDVQIRSSGQGGEASPEGNEKSTVVTFLSRPVGSLGDRSGRPSSVRIAAVVTRSCTNSTHGNPDQTGTGEAEEQEIEGEAGAEPLPACPSSAVSVLEMTVPRSRAGDEAGGSPARGSLEHHQRASSERGANAANSGSSRNYAPAFRVICTVELHSEQGDASAVACALSPDGRRLAVTTASGQVSTWSLPPVAASLKRDRNRSPQQSAREDDDVDDVQPGASPTPAGHGRETGKDGMAAQQGG------------LTGRDDDAXXXXXXXXXXXXXXXXXXXXXXXXXTQLGQPEFTIPHVPSPEELAHAKDLQEYRKRVEAGEIQEPTSTQ-GEEEEGCTPPPKPPQLPGLAHHLARVNFIPGAHGRQNGGDGSSGGLAVWRSNSNVCRLFRLPPPVYDGDGEQRQTVEKGNNDARVELSRTGTVAASTGFENADKTGIGREDSLAAKYDISRLPSVEWVLPSPITVLAVCEEEARGEAQDDDREMGGGWSCCGGADAPAPLVAIGTENGGVYLGDGALGTTRAGLSRHRAPVTALAFHGKRFLVSGSDDEMVQIHHFTVADPK-AGGDRCCVGGTPRLRCLHDARGSGIVQLACFREMPLAVAEDTSGRVVVYDLLSGSMLGVLALKDDAIASVTADTPDRSGDGAAVSHETGVPKAGILWSEGGERIAAVMPQEEETPTLSPTRNDSSGETLGVWSASDLMWELSPGMRAMVGEERPLSSRDIAELFYGLLPRERKDPEYTLPNTSHQYDPRRGDTAPLTTGT-NPNATSTRTKAGGRSSRGTGSGSSGHADRNITPQRAAARGRVAATKAPSNTVSTNVTRSPTSGTPPDYQRPTTLTERNVARLLGTGGRSGPMGGVLACTGEGGGVGRDGPAPWGMEVGAAARVKRYMEARHTERAARQARLENVTRNLLQAL 3450
MA+SFAHLRQRFRLASFVGWHSRLADGPKYVSLSALK+AFGVAGVVLTEDEVGYLVKKFADNRRRIDW+RLMIALDVGPPADFTDPDRSFLDNLPQPYRLIVSVL+TEIVDRAWEL+VERHPELDTSPADEARAAADIDLKRSC P VRLLDPH PL A AGD PVAAAA EG AIA D +DG GSSELL EG + NGDAD GENDAGNVS MQWD+RGQ LFTGG DGSVCVRLAGA+K+I VQIRSS GE EGN KS VTFLSRPVGSLG GR SSVRIAAVVT SC +S HGNPDQTG EA +QE E +AGAEP PACPSSAVSVLEMTVPRSRAGDEAGGSPARGSLEHHQ A SE GA+AANSG+ RNYAPAFRVICTVELHSEQ +A+AV+C LSPDGRRLAVTTASG+VSTWSLPPV+A L+R RNRSPQQSAREDDDVD VQPG+S T AGHGRET K+GMA QQGG L GRDDD XXXXXXXXXXXXXXXXXXXXXX TQLGQPEFTIPHVPSPEEL+HAK LQEYRKRVEAGEIQEPTSTQ KPPQL GLAHHLARV+FIP A GR NGG GS+GGLAVWRSNSNVCRLFRLPPPVYDGDG QRQTVE GNND VELSRTGTVAAS+GFE+ADKTGIG E SLAAKYDISRLPSVEWVLPSPITVLAVCEEE GEAQDD RE GGGWSCCGGADAPAPLVAIGTENGGVYLGD ALGTTRAGLSRHRA VTALAFHGKRFLVSGSDDEM+QIHH TVADP AGGDR CVGGTPRLRCLHDARGSGIV+LACFREMPLAVAEDTSGRVVVYDLLSG+MLGVLALKDDAI SV AD PDR+GDGAAVSHET PKAGI+WSEGGE +A VMPQE+ET LSPTR+DS GETLGVWSASDLMWELSPGMRAMVGEERPLS RD+AELFYGLLPR RKDPE L N SHQYDP RGDTAPLTTGT NP+ STRTKAGGRSSRGTGSGS G DR+ TPQRAA R RVAA KAPSNTVSTNVTR+PT+ TPP YQ PTTLTERNVARLLG GGR GPMGGVLACTGEGG VG+DGPAPWGMEVGAAARVKRYMEARHTERA RQARLENVTRNLLQAL
Sbjct: 1 MATSFAHLRQRFRLASFVGWHSRLADGPKYVSLSALKSAFGVAGVVLTEDEVGYLVKKFADNRRRIDWKRLMIALDVGPPADFTDPDRSFLDNLPQPYRLIVSVLETEIVDRAWELVVERHPELDTSPADEARAAADIDLKRSCHPFVRLLDPHSPLPAHAGDVKPVAAAAKEGEAIAADGFLDGRGSSELLFEGKDRNGDADDDGGGGENDAGNVSTMQWDNRGQFLFTGGRDGSVCVRLAGAVKDIGVQIRSSSLCGETFSEGNAKSAAVTFLSRPVGSLG---GRSSSVRIAAVVTSSCPDSGHGNPDQTGNREAGQQETERDAGAEPRPACPSSAVSVLEMTVPRSRAGDEAGGSPARGSLEHHQGARSEHGADAANSGNRRNYAPAFRVICTVELHSEQENATAVSCTLSPDGRRLAVTTASGRVSTWSLPPVSAPLERHRNRSPQQSAREDDDVDGVQPGSSRTSAGHGRETPKEGMAGQQGGERGAGVGESGAVLAGRDDDXXXXXXXXXXXXXXXXXXXXXXX---TQLGQPEFTIPHVPSPEELSHAKALQEYRKRVEAGEIQEPTSTQEXXXXXXXXXXXKPPQLSGLAHHLARVDFIPAADGRLNGGGGSTGGLAVWRSNSNVCRLFRLPPPVYDGDGGQRQTVEGGNNDGGVELSRTGTVAASSGFESADKTGIGSEGSLAAKYDISRLPSVEWVLPSPITVLAVCEEETGGEAQDDGREKGGGWSCCGGADAPAPLVAIGTENGGVYLGDAALGTTRAGLSRHRARVTALAFHGKRFLVSGSDDEMIQIHHLTVADPTGAGGDRRCVGGTPRLRCLHDARGSGIVRLACFREMPLAVAEDTSGRVVVYDLLSGTMLGVLALKDDAITSVAADRPDRNGDGAAVSHETVAPKAGIIWSEGGECMAVVMPQEQETSVLSPTRSDSGGETLGVWSASDLMWELSPGMRAMVGEERPLSPRDVAELFYGLLPRYRKDPEIMLQNMSHQYDPGRGDTAPLTTGTTNPDPASTRTKAGGRSSRGTGSGS-GRLDRSNTPQRAAGRDRVAAKKAPSNTVSTNVTRNPTTRTPPHYQHPTTLTERNVARLLGAGGRGGPMGGVLACTGEGGAVGKDGPAPWGMEVGAAARVKRYMEARHTERAVRQARLENVTRNLLQAL 1158
BLAST of mRNA_E-fasciculatus_F_contig1433.3155.1 vs. uniprot
Match: A0A7S2RZG0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZG0_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 9.880e-8 Identity = 33/82 (40.24%), Postives = 53/82 (64.63%), Query Frame = 1
Query: 127 AGVVLTEDEVGYLVKKFADNRRRIDWRRLMIALDVGPPADFTDPDRSFLDNLPQPYRLIVSVLDTEIVDRAWELIVERHPEL 372
+G+ L E + + FAD + +D+R+ +L + P+D++DP F D LPQPYR+I+ V++ EI++ AWE + RHPEL
Sbjct: 91 SGIRLQEADCTAITMVFADWQGDVDYRKWWRSLQIAKPSDYSDPALHF-DTLPQPYRMILKVMEQEILEPAWEELCVRHPEL 171 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1433.3155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1433.3155.1 >prot_E-fasciculatus_F_contig1433.3155.1 ID=prot_E-fasciculatus_F_contig1433.3155.1|Name=mRNA_E-fasciculatus_F_contig1433.3155.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1151bp MASSFAHLRQRFRLASFVGWHSRLADGPKYVSLSALKAAFGVAGVVLTEDback to top mRNA from alignment at E-fasciculatus_F_contig1433:4147..10732+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1433.3155.1 ID=mRNA_E-fasciculatus_F_contig1433.3155.1|Name=mRNA_E-fasciculatus_F_contig1433.3155.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6586bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1433:4147..10732+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1433:4147..10732+ >mRNA_E-fasciculatus_F_contig1433.3155.1 ID=mRNA_E-fasciculatus_F_contig1433.3155.1|Name=mRNA_E-fasciculatus_F_contig1433.3155.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=6906bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1433:4147..10732+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |