mRNA_E-fasciculatus_F_contig1433.3154.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1433.3154.1
Unique NamemRNA_E-fasciculatus_F_contig1433.3154.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1433.3154.1 vs. uniprot
Match: D7FYC4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYC4_ECTSI)

HSP 1 Score: 335 bits (858), Expect = 5.380e-106
Identity = 196/240 (81.67%), Postives = 209/240 (87.08%), Query Frame = 2 
Query:  368 MAELAIVKFAGQAVMVNIAELILECVDSIGSIVRGMKENNRHASQLLEAVEAIEPPIRAIQKKGTKLSGSESLRQLLETVREIRTVLDEYTRTCIVTRVLKRKKIAKKFAWLGSNLTQKMHAVQLDAIADRLEVVPPSPAAG--------TSIGAPAQNVADVLRQAPKTVGQSTAVGAAAGGTGGALLAL-GAETVTAAAVANAALAGALCTGIVGVAVGVGIVTYKAMNCAQPNQADS 1060
            M EL + KFAGQAV VNI ELILECVDSIGSIVRGMKENNRHASQLLE VEAIEPPIRAIQKKGT LSGSESLRQLLETV+EIRTVLDEY RTCIV R LKRKKIAKKFAWLG+NLTQKMHAVQL  IADRL+ VPP+PAA         TSIG PA+NVADVL+QAP TVGQSTAVGAAAGG GGALLA+ GAET+TAAA+ANAALAGA+CTGIVGVAVGVGIV Y+AMN AQ +Q  S
Sbjct:    1 MGELVLAKFAGQAV-VNIVELILECVDSIGSIVRGMKENNRHASQLLEIVEAIEPPIRAIQKKGTTLSGSESLRQLLETVQEIRTVLDEYARTCIVARALKRKKIAKKFAWLGNNLTQKMHAVQLGDIADRLDDVPPAPAAAVQRAPAARTSIGVPAKNVADVLKQAPTTVGQSTAVGAAAGGAGGALLAVVGAETLTAAAIANAALAGAVCTGIVGVAVGVGIVAYQAMNFAQSSQTSS 239
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BLAST of mRNA_E-fasciculatus_F_contig1433.3154.1 vs. uniprot
Match: D8LQ15_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ15_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.160e-16
Identity = 58/116 (50.00%), Postives = 72/116 (62.07%), Query Frame = 2 
Query:  410 MVNIAELILECVDSIGSIVRGMKENNRHASQLLEAVEAIEPPIRAIQKKGTKLSGSESLRQLLETVREIRTVLDEYTRTCIVTRVLKRKKIAKKFAWLGSNLTQKMHAVQLDAIAD 757
            MV++A +IL  V  I  +  G+ EN+R A +LL+   AIE P+ A+   GT LS SESLRQL  TV  IR  L+ Y RT  + R LKRK  A KF  LG NLT+ MHA+QLD   D
Sbjct:    1 MVDVAVVILRVVAEIHDVAEGINENHRQARRLLKRAMAIETPVLAVHN-GTILSSSESLRQLSATVENIRNFLEGYARTTKLNRALKRKSNAAKFTQLGVNLTEGMHALQLDVAVD 115
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1433.3154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYC4_ECTSI5.380e-10681.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LQ15_ECTSI1.160e-1650.00Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1433contigE-fasciculatus_F_contig1433:1081..3570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue3.6e-14
Seed eggNOG ortholog2880.D7G890
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_001340.1
Exons1
Model size2490
Cds size696
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1433.3154.1prot_E-fasciculatus_F_contig1433.3154.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1433 1448..2143 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927923.0168939-UTR-E-fasciculatus_F_contig1433:1080..14471622927923.0168939-UTR-E-fasciculatus_F_contig1433:1080..1447Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1433 1081..1447 +
1695995752.511486-UTR-E-fasciculatus_F_contig1433:1080..14471695995752.511486-UTR-E-fasciculatus_F_contig1433:1080..1447Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1433 1081..1447 +
1622927923.041503-UTR-E-fasciculatus_F_contig1433:2143..35701622927923.041503-UTR-E-fasciculatus_F_contig1433:2143..3570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1433 2144..3570 +
1695995752.5313802-UTR-E-fasciculatus_F_contig1433:2143..35701695995752.5313802-UTR-E-fasciculatus_F_contig1433:2143..3570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1433 2144..3570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927923.0287387-CDS-E-fasciculatus_F_contig1433:1447..21431622927923.0287387-CDS-E-fasciculatus_F_contig1433:1447..2143Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1433 1448..2143 +
1695995752.521698-CDS-E-fasciculatus_F_contig1433:1447..21431695995752.521698-CDS-E-fasciculatus_F_contig1433:1447..2143Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1433 1448..2143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1433.3154.1

>prot_E-fasciculatus_F_contig1433.3154.1 ID=prot_E-fasciculatus_F_contig1433.3154.1|Name=mRNA_E-fasciculatus_F_contig1433.3154.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=232bp
MAELAIVKFAGQAVMVNIAELILECVDSIGSIVRGMKENNRHASQLLEAV
EAIEPPIRAIQKKGTKLSGSESLRQLLETVREIRTVLDEYTRTCIVTRVL
KRKKIAKKFAWLGSNLTQKMHAVQLDAIADRLEVVPPSPAAGTSIGAPAQ
NVADVLRQAPKTVGQSTAVGAAAGGTGGALLALGAETVTAAAVANAALAG
ALCTGIVGVAVGVGIVTYKAMNCAQPNQADS*
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mRNA from alignment at E-fasciculatus_F_contig1433:1081..3570+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1433.3154.1 ID=mRNA_E-fasciculatus_F_contig1433.3154.1|Name=mRNA_E-fasciculatus_F_contig1433.3154.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2490bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1433:1081..3570+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTATTTTTTCTCGGATTCGTGAACAAGAGCTCTCGAACATATCGCGCCT
TCGGATCAGTTTTCGGCCGAAAATTCGAAAAAATACCTCACTTTTCTTCT
CGGCGGGCACGTTCTGTACACGATTTCGCAGGCTCCGAAGATGAAGTGCT
TTCGGAGAAAACATTGTGGTTGTTTCATGTTTCAGCAGTATGTGGACCAC
AACTTTTTCACGTATCCGGGCTTCATTACTGATAACAGCTTCTTACTAGG
TCCATCACCCTCTTCCTCCTCCTCCAAGTCTGAGTTCAAGCTATTCCGCC
GCACTCGCTACTGGCCCTCTCACTCTGCTGCCTTGCCAGGGAAGGCGTTG
CTGCCGCCTCCTTCGCCATGGCGGAGCTCGCGATTGTGAAGTTCGCGGGG
CAAGCGGTGATGGTGAACATCGCGGAGCTAATTCTGGAATGTGTGGACTC
GATCGGGAGTATTGTGAGAGGCATGAAAGAGAATAATCGTCACGCTTCCC
AACTGTTGGAGGCAGTGGAGGCAATCGAGCCTCCCATACGCGCCATACAG
AAGAAAGGCACCAAGTTGTCTGGTTCCGAATCCCTGCGCCAGCTGTTGGA
GACTGTGCGGGAAATCCGCACCGTCTTGGACGAGTACACGCGGACGTGTA
TAGTCACGCGCGTTTTGAAGAGGAAGAAGATCGCCAAGAAGTTCGCGTGG
CTCGGCAGCAACCTCACCCAGAAGATGCACGCAGTTCAGCTGGACGCCAT
AGCTGACCGTTTGGAAGTTGTGCCACCTTCACCGGCGGCCGGGACGAGCA
TTGGAGCGCCAGCGCAGAACGTGGCGGACGTGCTGAGACAGGCACCGAAG
ACTGTAGGGCAGTCCACCGCAGTGGGGGCAGCGGCCGGGGGGACAGGTGG
GGCTTTGCTGGCGCTTGGTGCAGAGACCGTTACCGCCGCGGCGGTCGCGA
ACGCTGCCTTGGCTGGAGCTCTTTGTACGGGAATCGTTGGTGTAGCGGTT
GGGGTGGGGATTGTAACGTACAAAGCGATGAATTGTGCTCAGCCCAATCA
AGCGGATTCCTGATGTCGTCTTGCCGAGCAAAGGATGCGAAATGAAAAGA
GGGCCGGACGAATTTTCAAGCACTCTCAAGAGGCAGATATCGGATGTCGA
ATAACACTGCCCAAAAGGATGGACACGGCGGCGTTGTGGGGGGGGAACTA
CATAGTTTGGTATTCCAGCACCGACATTCCTGATGGAGGACAGGGGTCAG
AATAGAGGAACGACGCAACTCGATGTTCCTTGTGAGTCTACCGGTTTTCA
TCAGATCCATCTGCTCTGCGTCCAACAAGTGTCCGGGCCCTAGGAAACGT
TTGGCCTGCACCGCGCGAATCGTATCCGTGTCCACGGTTTGACAGGGTAC
GTGTGGATATTGTATGACTAAGAGGAAGTCGCAATTATCGTTGCGCAGCA
GGTTCATCTTCTACAATTGTATTTGCCTGTTGTTTCGCGCAGCGTTCGAA
AAGCCAAATTGTTTCAGAAGACCTATTTTCCGCGCTATGTTTCCCACAAT
AACACTGTCCTCATCGGGGGATTGATATTCTCGCCTGTCCCTCTTCTCGT
CGAATGTATTGTCTGTTTGAGTACATCTGTTTGAATACATGTCTGTCTGT
TCAGGGCGTGTCGTTGGTTGAACGAAAAGGGGGGGGCAGCTTTGCGCCAG
GCGGGGCGAGGTAGGTAGACAGCACCGATTCATAAACCACCCTTTGTGCT
TGGAGCACAATTAGTTTTATGTAGCATCTTCCCTCAGAGGTCGGGGAATA
TTACAGTCTCAGTCCCTGTATTTATGTTTTTCCGGGGACGTTTCGTTGAT
ATCCCCGCCCATCATCTTGGGGGCGATGGCAGCAGTGGGGGTCGTTGACC
AATCAATGCAATCGTACGGAGCCTCTCAGATTAGAATTCCTACTATAAAA
AGCGGCGAAAGAGCCCAAAACGTCTGGGCGGGGTTGCCCGAATTTATTTT
TGCTCTATTGTAAGACAAGCCCGAGAGAGGGGAGCGGGGCCTCTGCGGGG
AAGTTTTCTTTTTGGGGTATGTGGAGGATACGGGCACACCATGAAGCTGT
AGATTGAGTGAGTGTCGTTACACAGTATTTCACCTTGCGCCGGTAGCATC
ACAGCGAAAGAAAAAAGAGTGTATGCACACAGAAGGCCACCCACCCATAC
GCCCACGCCTTACGCAGGTGTTTCTTTGGTTGGGGATATTGTACAATGAG
TGTACAAGGGTTTTTTCTCGTGTTCCAGGCAGTACCTGGATGTAGAATCG
TATCGATTGGCGTGCATTGAATTCCTTCGTTGGCAACTACTGTAGACTTA
TCGATAGCGCGGTGGACATTTTTTCTGTCGAACACGCGGGAGGCGGGAGG
CTTCCCCGTTTGTTTCATGAGGCATGTCGTCTCCGAGGTGGACGGCAGCA
CTTTTGTCGACGAAGGCTGGACAGCAGCATCAGCAGCAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1433:1081..3570+

>mRNA_E-fasciculatus_F_contig1433.3154.1 ID=mRNA_E-fasciculatus_F_contig1433.3154.1|Name=mRNA_E-fasciculatus_F_contig1433.3154.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1392bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1433:1081..3570+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGAGCTCGCGATTGTGAAGTTCGCGGGGCAAGCGGTGATGGTGAA
CATCGCGGAGCTAATTCTGGAATGTGTGGACTCGATCGGGAGTATTGTGA
GAGGCATGAAAGAGAATAATCGTCACGCTTCCCAACTGTTGGAGGCAGTG
GAGGCAATCGAGCCTCCCATACGCGCCATACAGAAGAAAGGCACCAAGTT
GTCTGGTTCCGAATCCCTGCGCCAGCTGTTGGAGACTGTGCGGGAAATCC
GCACCGTCTTGGACGAGTACACGCGGACGTGTATAGTCACGCGCGTTTTG
AAGAGGAAGAAGATCGCCAAGAAGTTCGCGTGGCTCGGCAGCAACCTCAC
CCAGAAGATGCACGCAGTTCAGCTGGACGCCATAGCTGACCGTTTGGAAG
TTGTGCCACCTTCACCGGCGGCCGGGACGAGCATTGGAGCGCCAGCGCAG
AACGTGGCGGACGTGCTGAGACAGGCACCGAAGACTGTAGGGCAGTCCAC
CGCAGTGGGGGCAGCGGCCGGGGGGACAGGTGGGGCTTTGCTGGCGCTTG
GTGCAGAGACCGTTACCGCCGCGGCGGTCGCGAACGCTGCCTTGGCTGGA
GCTCTTTGTACGGGAATCGTTGGTGTAGCGGTTGGGGTGGGGATTGTAAC
GTACAAAGCGATGAATTGTGCTCAGCCCAATCAAGCGGATTCCTGAATGG
CGGAGCTCGCGATTGTGAAGTTCGCGGGGCAAGCGGTGATGGTGAACATC
GCGGAGCTAATTCTGGAATGTGTGGACTCGATCGGGAGTATTGTGAGAGG
CATGAAAGAGAATAATCGTCACGCTTCCCAACTGTTGGAGGCAGTGGAGG
CAATCGAGCCTCCCATACGCGCCATACAGAAGAAAGGCACCAAGTTGTCT
GGTTCCGAATCCCTGCGCCAGCTGTTGGAGACTGTGCGGGAAATCCGCAC
CGTCTTGGACGAGTACACGCGGACGTGTATAGTCACGCGCGTTTTGAAGA
GGAAGAAGATCGCCAAGAAGTTCGCGTGGCTCGGCAGCAACCTCACCCAG
AAGATGCACGCAGTTCAGCTGGACGCCATAGCTGACCGTTTGGAAGTTGT
GCCACCTTCACCGGCGGCCGGGACGAGCATTGGAGCGCCAGCGCAGAACG
TGGCGGACGTGCTGAGACAGGCACCGAAGACTGTAGGGCAGTCCACCGCA
GTGGGGGCAGCGGCCGGGGGGACAGGTGGGGCTTTGCTGGCGCTTGGTGC
AGAGACCGTTACCGCCGCGGCGGTCGCGAACGCTGCCTTGGCTGGAGCTC
TTTGTACGGGAATCGTTGGTGTAGCGGTTGGGGTGGGGATTGTAACGTAC
AAAGCGATGAATTGTGCTCAGCCCAATCAAGCGGATTCCTGA
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