mRNA_E-fasciculatus_F_contig14304.3144.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14304.3144.1
Unique NamemRNA_E-fasciculatus_F_contig14304.3144.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14304.3144.1 vs. uniprot
Match: A0A6H5JZ01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ01_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 6.120e-87
Identity = 230/310 (74.19%), Postives = 235/310 (75.81%), Query Frame = 1 
Query:  316 GARASNN-SGFP--ATQNPFENQALNTAGVFNAAGGAGGGSGASLGVAGGLNEAPPAGTNSGAGVVEDLFGVAGGEGAGAMVPYGQQQQRQXQPLESHPLHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVVASNPFDDLLGGVPTAVGTGTGAGILQQQRTPRQPPQQQWPGHPFAGPQQXXXXXXXXXXXXXXXSWLGQGGAARNGDVTADGGLQLMQPQYPPHQQQLQIVPVQQPFQQQQQVQTVAPGNPFFHAAQDLPQQQQK-----------TAPGADLFGDDPFGASNSGSK 1203
            GAR SNN SGFP  ATQNPFENQA                      VAGGL EAP A TNSGAGVVEDLFGV GG G GAMVPYGQQQ     PLESHPLH    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  V ASNPFDDLLGGV TAVGTG+GAGILQQQ T +QP QQQWPGHPFAG  Q    XXXXXXXXX  SWLGQGGAARNGD  ADGGLQ MQ QYPPHQQQLQI PVQQPFQQQQQ+QTVAPGNPFF AAQDLPQQQQK            APGA+LFGDDPFG+ NSGSK
Sbjct:   14 GARTSNNNSGFPTPATQNPFENQAXXXXXXXXXXXXXXXXXXXXXXVAGGLIEAP-ASTNSGAGVVEDLFGVGGGAGPGAMVPYGQQQ-----PLESHPLH--LHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSVTASNPFDDLLGGVSTAVGTGSGAGILQQQYT-QQPHQQQWPGHPFAGSLQQYPQXXXXXXXXX--SWLGQGGAARNGDAAADGGLQPMQSQYPPHQQQLQIAPVQQPFQQQQQLQTVAPGNPFFDAAQDLPQQQQKGCSAASERRIRQAPGANLFGDDPFGSVNSGSK 312
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14304.3144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZ01_9PHAE6.120e-8774.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14304contigE-fasciculatus_F_contig14304:259..3021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1206
Cds size1203
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14304.3144.1prot_E-fasciculatus_F_contig14304.3144.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14304 260..3021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927921.817362-CDS-E-fasciculatus_F_contig14304:259..3221622927921.817362-CDS-E-fasciculatus_F_contig14304:259..322Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14304 260..322 -
1695995751.9071813-CDS-E-fasciculatus_F_contig14304:259..3221695995751.9071813-CDS-E-fasciculatus_F_contig14304:259..322Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14304 260..322 -
1622927921.8309815-CDS-E-fasciculatus_F_contig14304:751..8321622927921.8309815-CDS-E-fasciculatus_F_contig14304:751..832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14304 752..832 -
1695995751.9154723-CDS-E-fasciculatus_F_contig14304:751..8321695995751.9154723-CDS-E-fasciculatus_F_contig14304:751..832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14304 752..832 -
1622927921.8450925-CDS-E-fasciculatus_F_contig14304:1962..30211622927921.8450925-CDS-E-fasciculatus_F_contig14304:1962..3021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14304 1963..3021 -
1695995751.9258423-CDS-E-fasciculatus_F_contig14304:1962..30211695995751.9258423-CDS-E-fasciculatus_F_contig14304:1962..3021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14304 1963..3021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14304.3144.1

>prot_E-fasciculatus_F_contig14304.3144.1 ID=prot_E-fasciculatus_F_contig14304.3144.1|Name=mRNA_E-fasciculatus_F_contig14304.3144.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=401bp
KDAYRVGYHRRGGMAQDPFQGWGGSQGGAGAVDPFGEFPFQMPTPQPQQQ
QQKQFNAPQDPAPLVRPPHQDSVVAQPAGPGAAANNTSFMPPPPPHGGGG
GADPPGARASNNSGFPATQNPFENQALNTAGVFNAAGGAGGGSGASLGVA
GGLNEAPPAGTNSGAGVVEDLFGVAGGEGAGAMVPYGQQQQRQQQPLESH
PLHQHHHHTAPPQQQHHQTYQGAIVPFQQQQQQQQQQASGGTLVVASNPF
DDLLGGVPTAVGTGTGAGILQQQRTPRQPPQQQWPGHPFAGPQQQQQYQQ
QQHQQQQQQSWLGQGGAARNGDVTADGGLQLMQPQYPPHQQQLQIVPVQQ
PFQQQQQVQTVAPGNPFFHAAQDLPQQQQKTAPGADLFGDDPFGASNSGS
K
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mRNA from alignment at E-fasciculatus_F_contig14304:259..3021-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14304.3144.1 ID=mRNA_E-fasciculatus_F_contig14304.3144.1|Name=mRNA_E-fasciculatus_F_contig14304.3144.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2763bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14304:259..3021- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGACGCATACAGAGTAGGCTACCACCGGCGCGGCGGCATGGCGCAAGA
TCCGTTCCAGGGGTGGGGCGGAAGCCAGGGCGGAGCTGGCGCGGTGGACC
CGTTTGGCGAGTTCCCTTTTCAGATGCCGACGCCGCAACCACAACAACAG
CAGCAGAAGCAATTCAACGCCCCTCAAGACCCTGCTCCCCTTGTTCGTCC
ACCACATCAGGATTCTGTTGTAGCACAGCCAGCAGGGCCTGGCGCGGCGG
CCAACAACACGAGCTTCATGCCGCCGCCGCCGCCGCACGGCGGCGGGGGT
GGGGCTGACCCGCCCGGGGCGAGGGCCAGCAACAACAGCGGCTTCCCGGC
GACACAAAACCCTTTCGAGAACCAGGCGCTCAACACGGCTGGAGTGTTCA
ACGCGGCAGGTGGCGCCGGCGGCGGAAGCGGTGCTTCCCTTGGGGTGGCC
GGTGGCTTGAACGAGGCGCCGCCGGCGGGCACCAACTCGGGGGCTGGAGT
AGTGGAAGACTTGTTTGGTGTAGCAGGCGGCGAAGGCGCGGGCGCCATGG
TACCGTACGGCCAGCAGCAGCAGCGGCAGCAGCAGCCTCTGGAAAGCCAT
CCCCTGCACCAGCATCATCATCACACAGCCCCGCCGCAGCAACAACACCA
CCAGACGTACCAGGGGGCTATCGTCCCGTTCCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGGCCAGCGGAGGCACTTTGGTGGTGGCGTCGAACCCGTTC
GATGACCTGCTTGGCGGTGTGCCAACTGCCGTCGGCACCGGGACTGGTGC
TGGAATACTGCAGCAACAACGTACTCCACGACAACCGCCGCAGCAGCAGT
GGCCTGGGCATCCGTTTGCCGGACCACAACAACAACAGCAGTACCAGCAG
CAGCAACATCAGCAGCAACAGCAGCAGAGCTGGCTTGGCCAAGGGGGAGC
GGCTCGGAATGGCGACGTCACTGCTGATGGTGGGCTACAACTTATGCAGC
CGCAGTATCCGCCACATCAACAGCAGCTCCAGATCGTCCCCGTGCAGCAG
CCGTTTCAGGTGATCGCCGGGTCTGATCATCTGACAATGTATTTTCAATT
TTAGTGCTCTCCTTCGTATGCATACTTGACAGCAGTCAATAAAATTCCGC
GTGTATTCCGTGCTTGGAGAGGAAGCACACAATTTCCCCCCTGCTCTCTC
TTTCCCACCCCTCTCCTCTCGGGTGTCAGAATTTCCACATTTTTTTGTGC
ATTCGTAAAACCGAAATTGTTCTTTCGAAATGCCGTCGTACCGTCGTACG
ATCCGTCGCCGCGCCAAGAATCACCGAACTCGTCTGTCTGTTGTTGGATG
TCGCATCCACGGTTGCGTCGGGAATGTCCAACACGAGCAAGCGGCAACAT
GGCACTTGACTCATCAGGCCTCGCAATTGCAAAAGGCATGATGCCAACGT
GTCGATATTGGAGGGATGCAGGATGAAAGCTCCCCTGGTTGTTTTCCGCA
GGCATTAGTACTGCGATTGGCAGCACCGTCTGTGCCCGCATGTCGTGGGT
GCATTCACGGTTTCGGCACCAACACAGCCAACCTTGTACCTTTTTTTTCT
TTTTCGGTGCAAGTAGTACGAGAGCCTGTGACCAAGCACAAGCAATAAAT
ACATAAATACTCTGGGTGAGCCGGACGTGTTTTCGTTGACCAGCCGTTCA
ACGAGATTGGTGGTAAATTAGTCATACGCACCGCCACCGCGCAAAAAAGA
GACTGGCGTGCTTTCTCTGTCCGTCGCGGTTGGGATGCCAGTCATGTAAA
ATACACTCCCGTCGACGCCAACAATGTGGTATTACAGAGACTCGGGAAGA
ACCGTAGGGATGAAGACGCTGAAGCTAGCAGCAGGCCCACTGGAGCAACG
AGAAGAAAAGTCGGATAAAGAACAACCCGCTGGCTCACAGGATTACGATG
CTAGCACGGGAATAGAAGAAAACGTAGCCGGGATGATGCTTCGCGGTGGT
GTTGAGACTACTTCAAATATTTAGTCGTCCTGGAGGGTTTCTCGCCCATT
TCTGCCGCGCAACCCCGTGCCCACCTTCCACCTTTCTGTTGTGCCGCCGG
TTTCTCCGTGCTCCGTCGTACACCTTGGATGGGGACCAAACAATTTCGTC
CGCGTGGAAAATGTTTTCACTCATCGTCATCATCATCAGCAGCAGCAGCA
GGTGCAGACGGTGGCCCCAGGAAACCCTTTCTTTCATGCCGCGCAGGACC
TCCCGCAGCAGCAACAGAAGGTGCGAGCTTGGCAGGCAGCAGAACCGGTG
TCTTGTTAAGGACGAACCCTTGCCCGGGGGGGAGCACGGCACCGGGAAGC
AGCAGCAGCAGCAGCAGCGGCAGGAATAGTACACTGCAACTAGCAAGTAC
TACTGTTACTACTGTCGTCGTATGCATAGTACTAGCGCAACTGGCCTCGG
CGGCTGGGGAGGCGAGGTTGCTCGATAAGTCGTGAGGGGGGAGGAAGTCT
TGCGTGGTCGACGCTTTGGTCGAGCGCAGCTGGGGGGTGTTCAGCCTGGT
TGCTGTGTGTAACTGTTATCTTACCCGTTCACCCCTCTCACCTGCCGAAA
TTGTTTGGTCCCTTGTCGGCGCTAAACCCTCTGTCCCCTGCGGTGGCTGT
TGCTGTTGTTGTTGCTTCTGCTAACGGGTGTTGCTTTCGGCGGCAGCAGA
CTGCCCCTGGCGCTGATCTGTTCGGCGACGACCCGTTCGGTGCTTCAAAT
AGCGGGAGCAAGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14304:259..3021-

>mRNA_E-fasciculatus_F_contig14304.3144.1 ID=mRNA_E-fasciculatus_F_contig14304.3144.1|Name=mRNA_E-fasciculatus_F_contig14304.3144.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2406bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14304:259..3021- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGACGCATACAGAGTAGGCTACCACCGGCGCGGCGGCATGGCGCAAGA
TCCGTTCCAGGGGTGGGGCGGAAGCCAGGGCGGAGCTGGCGCGGTGGACC
CGTTTGGCGAGTTCCCTTTTCAGATGCCGACGCCGCAACCACAACAACAG
CAGCAGAAGCAATTCAACGCCCCTCAAGACCCTGCTCCCCTTGTTCGTCC
ACCACATCAGGATTCTGTTGTAGCACAGCCAGCAGGGCCTGGCGCGGCGG
CCAACAACACGAGCTTCATGCCGCCGCCGCCGCCGCACGGCGGCGGGGGT
GGGGCTGACCCGCCCGGGGCGAGGGCCAGCAACAACAGCGGCTTCCCGGC
GACACAAAACCCTTTCGAGAACCAGGCGCTCAACACGGCTGGAGTGTTCA
ACGCGGCAGGTGGCGCCGGCGGCGGAAGCGGTGCTTCCCTTGGGGTGGCC
GGTGGCTTGAACGAGGCGCCGCCGGCGGGCACCAACTCGGGGGCTGGAGT
AGTGGAAGACTTGTTTGGTGTAGCAGGCGGCGAAGGCGCGGGCGCCATGG
TACCGTACGGCCAGCAGCAGCAGCGGCAGCAGCAGCCTCTGGAAAGCCAT
CCCCTGCACCAGCATCATCATCACACAGCCCCGCCGCAGCAACAACACCA
CCAGACGTACCAGGGGGCTATCGTCCCGTTCCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGGCCAGCGGAGGCACTTTGGTGGTGGCGTCGAACCCGTTC
GATGACCTGCTTGGCGGTGTGCCAACTGCCGTCGGCACCGGGACTGGTGC
TGGAATACTGCAGCAACAACGTACTCCACGACAACCGCCGCAGCAGCAGT
GGCCTGGGCATCCGTTTGCCGGACCACAACAACAACAGCAGTACCAGCAG
CAGCAACATCAGCAGCAACAGCAGCAGAGCTGGCTTGGCCAAGGGGGAGC
GGCTCGGAATGGCGACGTCACTGCTGATGGTGGGCTACAACTTATGCAGC
CGCAGTATCCGCCACATCAACAGCAGCTCCAGATCGTCCCCGTGCAGCAG
CCGTTTCAGAAGGACGCATACAGAGTAGGCTACCACCGGCGCGGCGGCAT
GGCGCAAGATCCGTTCCAGGGGTGGGGCGGAAGCCAGGGCGGAGCTGGCG
CGGTGGACCCGTTTGGCGAGTTCCCTTTTCAGATGCCGACGCCGCAACCA
CAACAACAGCAGCAGAAGCAATTCAACGCCCCTCAAGACCCTGCTCCCCT
TGTTCGTCCACCACATCAGGATTCTGTTGTAGCACAGCCAGCAGGGCCTG
GCGCGGCGGCCAACAACACGAGCTTCATGCCGCCGCCGCCGCCGCACGGC
GGCGGGGGTGGGGCTGACCCGCCCGGGGCGAGGGCCAGCAACAACAGCGG
CTTCCCGGCGACACAAAACCCTTTCGAGAACCAGGCGCTCAACACGGCTG
GAGTGTTCAACGCGGCAGGTGGCGCCGGCGGCGGAAGCGGTGCTTCCCTT
GGGGTGGCCGGTGGCTTGAACGAGGCGCCGCCGGCGGGCACCAACTCGGG
GGCTGGAGTAGTGGAAGACTTGTTTGGTGTAGCAGGCGGCGAAGGCGCGG
GCGCCATGGTACCGTACGGCCAGCAGCAGCAGCGGCAGCAGCAGCCTCTG
GAAAGCCATCCCCTGCACCAGCATCATCATCACACAGCCCCGCCGCAGCA
ACAACACCACCAGACGTACCAGGGGGCTATCGTCCCGTTCCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGGCCAGCGGAGGCACTTTGGTGGTGGCGTCG
AACCCGTTCGATGACCTGCTTGGCGGTGTGCCAACTGCCGTCGGCACCGG
GACTGGTGCTGGAATACTGCAGCAACAACGTACTCCACGACAACCGCCGC
AGCAGCAGTGGCCTGGGCATCCGTTTGCCGGACCACAACAACAACAGCAG
TACCAGCAGCAGCAACATCAGCAGCAACAGCAGCAGAGCTGGCTTGGCCA
AGGGGGAGCGGCTCGGAATGGCGACGTCACTGCTGATGGTGGGCTACAAC
TTATGCAGCCGCAGTATCCGCCACATCAACAGCAGCTCCAGATCGTCCCC
GTGCAGCAGCCGTTTCAGCAGCAGCAGCAGGTGCAGACGGTGGCCCCAGG
AAACCCTTTCTTTCATGCCGCGCAGGACCTCCCGCAGCAGCAACAGAAGC
AGCAGCAGCAGGTGCAGACGGTGGCCCCAGGAAACCCTTTCTTTCATGCC
GCGCAGGACCTCCCGCAGCAGCAACAGAAGACTGCCCCTGGCGCTGATCT
GTTCGGCGACGACCCGTTCGGTGCTTCAAATAGCGGGAGCAAGACTGCCC
CTGGCGCTGATCTGTTCGGCGACGACCCGTTCGGTGCTTCAAATAGCGGG
AGCAAG
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