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Homology
BLAST of mRNA_E-fasciculatus_F_contig143.3138.1 vs. uniprot
Match: D8LTF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTF5_ECTSI) HSP 1 Score: 384 bits (986), Expect = 1.330e-131 Identity = 216/269 (80.30%), Postives = 222/269 (82.53%), Query Frame = -2
Query: 30 DGFVFRAVSAKPSVLRLGAARPNGGNSSKSGSAKARDLAVSSRHSRSP------QTPWLADIMASWFNLPLSNTSPSRSGGTKRRSARDDIRADILEVGTWVSNAELREEVLALRTSMVQRGFFPVDDVFATATAT--GGAPASGNRQXXXXXXXXXXXXXPAKLPREARLAALAVLWGAAVALGGVFVPIAIGVGAARSLRWLDDGGALVPKRWRGRLLPLGWRRARALSFVPVLARPPRDGGGGDEGLVTGEALADAWDEMYAPRQR 812
DGFVF A SAKP VLRLGAAR N G+SSKSG AKARDLAV+SRHSRSP QTPWLADIMASWFNLPL NTSPS GGTKRRS RDDIRADIL++ VSNA+LREEVLALR SMVQRGFFPVDDVFATATAT GG PASGN Q PAKL REARLAAL VLWGAAVALGGVFVPIAIGVGAARSLRWLD+GG LVPKRW R L GWRRARALSFVPVLARPPRDGGGG EGLVTGEALADAWDEMY PRQR
Sbjct: 23 DGFVFGAASAKPGVLRLGAARTNDGDSSKSGGAKARDLAVASRHSRSPPAQPLQQTPWLADIMASWFNLPLRNTSPS--GGTKRRSTRDDIRADILKLR--VSNADLREEVLALRNSMVQRGFFPVDDVFATATATATGGTPASGNGQQPPTSEGGDPKP-PAKLQREARLAALVVLWGAAVALGGVFVPIAIGVGAARSLRWLDNGGTLVPKRW-SRPLGRGWRRARALSFVPVLARPPRDGGGGGEGLVTGEALADAWDEMYPPRQR 285
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-02_006150.1 |
| Exons | 4 |
| Model size | 915 |
| Cds size | 915 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig143.3138.1 >prot_E-fasciculatus_F_contig143.3138.1 ID=prot_E-fasciculatus_F_contig143.3138.1|Name=mRNA_E-fasciculatus_F_contig143.3138.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=305bp
MTSWRCHEYYRCRGAYISSQASARASPVTSPSSPPPPSLGGRASTGTKLR
ARARLHPSGRRRPLHLLGTSAPPSSNQRSERAAPTPMAMGTNTPPRATAA
PHNTARAARRASRGSFAGGGFESPPPGVGGCCRLPEAGAPPVAVAVAKTS
STGKKPRWTMEVRRASTSSLSSALDTHVPTSRISARMSSRADLLFVPPER
EGDVFDKGRLNHDAMISASHGVCGDLECREDTAKSRAFALPLLLLLPPLG
LAAPNLRTLGFALTARKTKPSLAVLKEQERGTHPPTQHMKQFQQMERPHE
ERQQ* back to topmRNA from alignment at E-fasciculatus_F_contig143:20900..23333+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig143.3138.1 ID=mRNA_E-fasciculatus_F_contig143.3138.1|Name=mRNA_E-fasciculatus_F_contig143.3138.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2434bp|location=Sequence derived from alignment at E-fasciculatus_F_contig143:20900..23333+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGTCATGGCGATGCCACGAGTACTACCGTTGCCGAGGAGCGTACAT
CTCGTCCCAGGCATCGGCGAGAGCTTCTCCGGTCACGAGCCCCTCGTCAC
CGCCGCCCCCGTCCCTCGGCGGGCGCGCCAGCACCGGCACAAAGCTCAGA
GCGCGCGCCCGTCTCCACCCAAGCGGCAGGAGGCGACCCCTCCACCTCTT
GGGAACGAGCGCGCCGCCGTCGTCCAACCAGCGCAGCGAGCGCGCCGCCC
CCACCCCGATGGCGATGGGAACGAACACGCCCCCGAGGGCAACCGCCGCT
CCCCACAACACGGCAAGGGCAGCCAGGCGGGCCTCCCGCGGGAGCTTCGC
CGGCGGCGGCTTCGAGTCGCCTCCTCCGGGCGTCGGGGGTTGCTGCCGGT
TGCCCGAAGCAGGCGCCCCCCCTGTCGCCGTCGCGGTCGCGAAGACGTCA
TCGACAGGGAAAAAGCCGCGCTGGACCATGGAGGTGCGCAGGGCGAGCAC
CTCTTCCCTGAGCTCAGCGTTGGATACCCGTAGCTGAACAGGGACCGGCC
GGGGGGGTACGTCAGGGTAAAGGGGGGGGGGGAGGGTATGAGTGAGGAGG
GGGCGAGGAGACTCTCATCTACTACATGTGATTCTGCTTAGCCCCGGTGT
CTACCGTCAAGTACCAGTAGTTATACTGGAATCGATTGGTGTGAGACGAC
AGCACGGATCGGTGGGGTAGGTCAGGTTCGATAAGGTATTAGTAGAGGGT
CGGGGGTGGCACGATCTGTTGGTTGGATTGCGAATGGCCGCCGACCACAC
GTGGGAGCAACACAGCTTGCCTTAGCGTAGCGGTCGGTCAGTCACACCCT
ACACCAAGGTTACTATGCATATCCCACTGTGCGAGGCAAGTGTCGAGCTA
GCCTAGCCGTTCTCGTCGACAGATCAAACAAACAAACACGTATGTATCTC
CTTACATGCACACCGCGCAGCATGGGCGTGTGCAGTTACTTCATTACAGG
GCATCAAATCGAGCCATCAACGCGGAACAAGCAGTCCAAACGCAGACGTG
CCTACCTCTAGAATATCGGCCCGGATGTCGTCACGCGCAGACCTCCTCTT
CGTCCCACCCGAACGTGAAGGTGATGTGTTCGACAAAGGCAGATTGAACC
ACGATGCCATGATATCAGCAAGCCACGGCGTCTGTTCCAAGTTGACACGC
AACGACCATGTTGACAGCAGTGTTGAGAGTGTCAGGACGGGATATCCATG
AACGTAAAGCTGAGACGGATGTTAGTAGATAGGAAATGAACTAATTTAGC
AGTACTAAATTCTAGACATGGCGACCATATTGCTTGCTCACGGGGATGTT
GATACAAGTCTTTACTGCTGTGAGGATAGAAAGAAACCCGTTGAAGTCTT
GCTGACTGAACGTGCGAACACCCTACCCCCAAAATCCTTTACATCGAGAA
GTTGTTAAGATGCACCATACCTGTCGCAGTGGTTGTGAAGGCGGCGATCT
TGAGTGCCGAGAAGACACCGCCAAATCTCGTGCTTTCGCACTGCCGCTCT
TGCTACTATTGCCGCCGTTAGGCCTCGCAGCACCCAACCTCAGGACACTT
GGCTTTGCGCTCACGGCGCGGAAAACAAAGCCATCGTAGCCATCGGCCAC
GCCGAAGATTGTAAGAAACCCTGAGCAGCACGAGCAGCAGCAGCAGCAAC
AGCAGCAACAGCAGCAACAACACGAATGAGCGACTATCAACAGGCGGAGA
CAACACCAGCTGGCAGTACAGCAGAAGTATTGACGCTCCTCGACTGCTGT
ACATTCATATCGGCAGCAGTCGTGGAGGTCTTGCATAATATTTGCAGTCA
AACATAACATAGTCTACTGCTGTACCACGAGACACCAGGTGGTAGCGCGG
GCATATGTAGTATTATAGTATTAATAGACCACCATGCACCCACTACTGCT
GCTACTGCTGTTGTTGATTGCAGGTTTACTACTGTAGGCACGCGCCAGTC
GGTGGAGCTCCGCTATTTGAATACATTCCTGTACTTTAGTTGGTGTCGCT
ACCGTCTGGAAAGGGCCGTATCAGCCCTACTACTGCTGTACAGCAAGTGT
TGCTTGACACAAAACTAAGCCGGCACAGATTGCTCTACCCTCAACAAGAG
ATCGCAGCCTCAACTACCCACAAAGAAACGAGGCAAAGAAAGGAGCTTCC
CATATCTTGCGTACAGTATTGGAAGCGCGGGGGAGAGGTGGAGATGGCGT
GCCCTTCACGAACGTCCTTTATTTCAGTGTCATGCACCTGATATTTGCCA
GCATTCCATCCCTACAACTCAACACACCCAGGTTAGCGGTTTTGAAAGAA
CAGGAGCGCGGCACTCATCCACCCACCCAGCACATGAAGCAATTCCAGCA
GATGGAGAGGCCGCATGAAGAAAGACAGCAGTAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig143:20900..23333+ >mRNA_E-fasciculatus_F_contig143.3138.1 ID=mRNA_E-fasciculatus_F_contig143.3138.1|Name=mRNA_E-fasciculatus_F_contig143.3138.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1830bp|location=Sequence derived from alignment at E-fasciculatus_F_contig143:20900..23333+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACGTCATGGCGATGCCACGAGTACTACCGTTGCCGAGGAGCGTACAT
CTCGTCCCAGGCATCGGCGAGAGCTTCTCCGGTCACGAGCCCCTCGTCAC
CGCCGCCCCCGTCCCTCGGCGGGCGCGCCAGCACCGGCACAAAGCTCAGA
GCGCGCGCCCGTCTCCACCCAAGCGGCAGGAGGCGACCCCTCCACCTCTT
GGGAACGAGCGCGCCGCCGTCGTCCAACCAGCGCAGCGAGCGCGCCGCCC
CCACCCCGATGGCGATGGGAACGAACACGCCCCCGAGGGCAACCGCCGCT
CCCCACAACACGGCAAGGGCAGCCAGGCGGGCCTCCCGCGGGAGCTTCGC
CGGCGGCGGCTTCGAGTCGCCTCCTCCGGGCGTCGGGGGTTGCTGCCGGT
TGCCCGAAGCAGGCGCCCCCCCTGTCGCCGTCGCGGTCGCGAAGACGTCA
TCGACAGGGAAAAAGCCGCGCTGGACCATGGAGGTGCGCAGGGCGAGCAC
CTCTTCCCTGAGCTCAGCGTTGGATACCCATGACGTCATGGCGATGCCAC
GAGTACTACCGTTGCCGAGGAGCGTACATCTCGTCCCAGGCATCGGCGAG
AGCTTCTCCGGTCACGAGCCCCTCGTCACCGCCGCCCCCGTCCCTCGGCG
GGCGCGCCAGCACCGGCACAAAGCTCAGAGCGCGCGCCCGTCTCCACCCA
AGCGGCAGGAGGCGACCCCTCCACCTCTTGGGAACGAGCGCGCCGCCGTC
GTCCAACCAGCGCAGCGAGCGCGCCGCCCCCACCCCGATGGCGATGGGAA
CGAACACGCCCCCGAGGGCAACCGCCGCTCCCCACAACACGGCAAGGGCA
GCCAGGCGGGCCTCCCGCGGGAGCTTCGCCGGCGGCGGCTTCGAGTCGCC
TCCTCCGGGCGTCGGGGGTTGCTGCCGGTTGCCCGAAGCAGGCGCCCCCC
CTGTCGCCGTCGCGGTCGCGAAGACGTCATCGACAGGGAAAAAGCCGCGC
TGGACCATGGAGGTGCGCAGGGCGAGCACCTCTTCCCTGAGCTCAGCGTT
GGATACCCACGTGCCTACCTCTAGAATATCGGCCCGGATGTCGTCACGCG
CAGACCTCCTCTTCGTCCCACCCGAACGTGAAGGTGATGTGTTCGACAAA
GGCAGATTGAACCACGATGCCATGATATCAGCAAGCCACGGCGTCTACGT
GCCTACCTCTAGAATATCGGCCCGGATGTCGTCACGCGCAGACCTCCTCT
TCGTCCCACCCGAACGTGAAGGTGATGTGTTCGACAAAGGCAGATTGAAC
CACGATGCCATGATATCAGCAAGCCACGGCGTCTGCGGCGATCTTGAGTG
CCGAGAAGACACCGCCAAATCTCGTGCTTTCGCACTGCCGCTCTTGCTAC
TATTGCCGCCGTTAGGCCTCGCAGCACCCAACCTCAGGACACTTGGCTTT
GCGCTCACGGCGCGGAAAACAAAGCCATCGCGGCGATCTTGAGTGCCGAG
AAGACACCGCCAAATCTCGTGCTTTCGCACTGCCGCTCTTGCTACTATTG
CCGCCGTTAGGCCTCGCAGCACCCAACCTCAGGACACTTGGCTTTGCGCT
CACGGCGCGGAAAACAAAGCCATCGTTAGCGGTTTTGAAAGAACAGGAGC
GCGGCACTCATCCACCCACCCAGCACATGAAGCAATTCCAGCAGATGGAG
AGGCCGCATGAAGAAAGACAGCAGTAGGTTAGCGGTTTTGAAAGAACAGG
AGCGCGGCACTCATCCACCCACCCAGCACATGAAGCAATTCCAGCAGATG
GAGAGGCCGCATGAAGAAAGACAGCAGTAG back to top
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