mRNA_E-fasciculatus_F_contig14296.3134.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14296.3134.1
Unique NamemRNA_E-fasciculatus_F_contig14296.3134.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14296.3134.1 vs. uniprot
Match: D8LSK1_ECTSI (Acyl-CoA binding domain protein and partial Diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK1_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 3.270e-129
Identity = 201/248 (81.05%), Postives = 213/248 (85.89%), Query Frame = 1 
Query:   37 ADRRKTSAGRWG-EAADAEEMARLRKHTESLERYVAMIHDELTDLDDVDVTMSGWLYKWRDRDAYLWGSVKWVPRFFTLCDGKLSTYKSDQSTEAESVMSLKRCVLRDEGTRTGKAPGRGKPRPEYHLFGLYLEGAMQRGPDAGVLLRLSTEKEDVADRWISTLGEVCAQEEDLSSPPSSPSASEVDQAEATPSXXXXXXXXXXXXXXXXXXXVDGGDSAPRMSRMSSVGMSRKGSWDVAGGLQNLKR 777
            AD RKTSA  WG EAADA+EMARLR+HTESLERYV MI DELTDL+DVDV+MSGWL+KWRDRDAYLWGSVKWVPRFFTL DGKLSTYKSDQ  EAESVMSLKRCVLRDEGTR GKAPGRGKPRPEYH+FGLYLEGAMQRGPDAGVLLRLST+KEDVA++WIS+LGEVCAQEED SSP SSP ASE DQ+EATPS                    DG DSAPRMSR+SSVGMSRKGSWDVAGGLQNLKR
Sbjct:  142 ADGRKTSAV-WGREAADAQEMARLREHTESLERYVVMIRDELTDLNDVDVSMSGWLFKWRDRDAYLWGSVKWVPRFFTLSDGKLSTYKSDQCAEAESVMSLKRCVLRDEGTRIGKAPGRGKPRPEYHVFGLYLEGAMQRGPDAGVLLRLSTDKEDVAEKWISSLGEVCAQEEDHSSPASSPCASEADQSEATPSSSACSSPVVTASMPPAPPPADGLDSAPRMSRISSVGMSRKGSWDVAGGLQNLKR 388
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BLAST of mRNA_E-fasciculatus_F_contig14296.3134.1 vs. uniprot
Match: A0A6H5LJ48_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ48_9PHAE)

HSP 1 Score: 379 bits (974), Expect = 1.100e-125
Identity = 204/246 (82.93%), Postives = 217/246 (88.21%), Query Frame = 1 
Query:   40 DRRKTSAGRWGEAADAEEMARLRKHTESLERYVAMIHDELTDLDDVDVTMSGWLYKWRDRDAYLWGSVKWVPRFFTLCDGKLSTYKSDQSTEAESVMSLKRCVLRDEGTRTGKAPGRGKPRPEYHLFGLYLEGAMQRGPDAGVLLRLSTEKEDVADRWISTLGEVCAQEEDLSSPPSSPSASEVDQAEATPSXXXXXXXXXXXXXXXXXXXVDGGDSAPRMSRMSSVGMSRKGSWDVAGGLQNLKR 777
            D RKTSAGR GEA DA+E+ARLR+HTESLERYV MI  ELTDLDDVDV+MSGWL+KWRD+DAYLWGSVKWVPRFFTL DGKLSTYKSDQS EAESVMSLKRCVLRDEGTR GKAPGRGKPRP+YH+FGLYLEGAMQRGPDAGVLLRLST+KEDVA+RWIS LG+VCAQEED SSP SSP ASE DQ+EATPS XXX         XXXXXX  G D APRMSR+SSV MSRKGSWDVAGGLQNLKR
Sbjct:  143 DGRKTSAGRGGEAVDAQEVARLREHTESLERYVEMIRHELTDLDDVDVSMSGWLFKWRDQDAYLWGSVKWVPRFFTLSDGKLSTYKSDQSAEAESVMSLKRCVLRDEGTRMGKAPGRGKPRPQYHVFGLYLEGAMQRGPDAGVLLRLSTDKEDVAERWISALGKVCAQEEDHSSPASSPCASEADQSEATPSSXXXSSPVVTESMXXXXXXAHGLDPAPRMSRISSVRMSRKGSWDVAGGLQNLKR 388
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14296.3134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSK1_ECTSI3.270e-12981.05Acyl-CoA binding domain protein and partial Diacyl... [more]
A0A6H5LJ48_9PHAE1.100e-12582.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14296contigE-fasciculatus_F_contig14296:8..3258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score388.7
Seed ortholog evalue2.2e-105
Seed eggNOG ortholog2880.D8LSK1
Preferred nameacbp-6
KEGG koko:K08762
KEGG Pathwayko03320,map03320
EggNOG free text desc.acyl-coa-binding protein
EggNOG OGsCOG4281@1,KOG0817@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionacyl-CoA binding domain protein and partial Diacylglycerol O-acyltransferase
Ec32 orthologEc-09_001930.1
Exons5
Model size780
Cds size780
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14296.3134.1prot_E-fasciculatus_F_contig14296.3134.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14296 8..3258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927920.3431435-CDS-E-fasciculatus_F_contig14296:7..1381622927920.3431435-CDS-E-fasciculatus_F_contig14296:7..138Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14296 8..138 +
1695995751.1188323-CDS-E-fasciculatus_F_contig14296:7..1381695995751.1188323-CDS-E-fasciculatus_F_contig14296:7..138Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14296 8..138 +
1622927920.3581862-CDS-E-fasciculatus_F_contig14296:1110..12241622927920.3581862-CDS-E-fasciculatus_F_contig14296:1110..1224Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14296 1111..1224 +
1695995751.1368308-CDS-E-fasciculatus_F_contig14296:1110..12241695995751.1368308-CDS-E-fasciculatus_F_contig14296:1110..1224Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14296 1111..1224 +
1622927920.3688557-CDS-E-fasciculatus_F_contig14296:1777..19281622927920.3688557-CDS-E-fasciculatus_F_contig14296:1777..1928Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14296 1778..1928 +
1695995751.1457965-CDS-E-fasciculatus_F_contig14296:1777..19281695995751.1457965-CDS-E-fasciculatus_F_contig14296:1777..1928Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14296 1778..1928 +
1622927920.3846467-CDS-E-fasciculatus_F_contig14296:2337..24501622927920.3846467-CDS-E-fasciculatus_F_contig14296:2337..2450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14296 2338..2450 +
1695995751.1566885-CDS-E-fasciculatus_F_contig14296:2337..24501695995751.1566885-CDS-E-fasciculatus_F_contig14296:2337..2450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14296 2338..2450 +
1622927920.3969293-CDS-E-fasciculatus_F_contig14296:2987..32581622927920.3969293-CDS-E-fasciculatus_F_contig14296:2987..3258Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14296 2988..3258 +
1695995751.1651576-CDS-E-fasciculatus_F_contig14296:2987..32581695995751.1651576-CDS-E-fasciculatus_F_contig14296:2987..3258Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14296 2988..3258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14296.3134.1

>prot_E-fasciculatus_F_contig14296.3134.1 ID=prot_E-fasciculatus_F_contig14296.3134.1|Name=mRNA_E-fasciculatus_F_contig14296.3134.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=260bp
GGGGGGAAAAAGADRRKTSAGRWGEAADAEEMARLRKHTESLERYVAMIH
DELTDLDDVDVTMSGWLYKWRDRDAYLWGSVKWVPRFFTLCDGKLSTYKS
DQSTEAESVMSLKRCVLRDEGTRTGKAPGRGKPRPEYHLFGLYLEGAMQR
GPDAGVLLRLSTEKEDVADRWISTLGEVCAQEEDLSSPPSSPSASEVDQA
EATPSSSACSSPVVTASMPPPPPPVDGGDSAPRMSRMSSVGMSRKGSWDV
AGGLQNLKR*
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mRNA from alignment at E-fasciculatus_F_contig14296:8..3258+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14296.3134.1 ID=mRNA_E-fasciculatus_F_contig14296.3134.1|Name=mRNA_E-fasciculatus_F_contig14296.3134.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3251bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14296:8..3258+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGAGGGGGGGGCGGCGCGGCGGCGGCGGCGGGAGCAGACAGGAGGAA
GACGTCGGCCGGTCGGTGGGGAGAGGCTGCGGATGCAGAAGAGATGGCGA
GGCTCAGGAAGCACACGGAGTCATTAGAACGGTGGGATGTTGTGTCCCCG
ACACCTGAGATTTAGAAATACCCAAAAACAAACCAAAACATAACGAAGCA
CTTACCGACATGATTTCGGCCTGTATTGATCATCACCTTGTAAGTGGTTC
GATGGTTGACTGTTTTCTTTTTTTTTTGTCGGTTTCCTAGGCTGGGAGGT
GGGTGGGGCATTCGAACGCTTTCTTGTTTATGGAAGCATGACTGCTAGTA
GGTTTCTCGCATGAGTCCCTGGATGCAGAAGGCGCGCCGCAAGTTGCCTG
TGTGTGTTGTAGCAGAGCGTTCGTTGCCACAGCAGTGCGCGAATCCTGGC
CAAGTGCTTGGTGTATCGCTGAGGCCTACCCAGTGCCCGCGAAAAAGACC
GTTGTCTTTCCCCTGCAGATGCGGCCCAAAACATCGCAAAGCATGTTTGA
GACTAGTTCCGATATCCTCGAACACATTGTTCGATGGCGATCTGTTTCTG
TCTTTTTCCCGCCGAACTATGTAGAGGCCGGAGTACGCATCCGTCGAAGA
AGGCACTTTAGATTTGAATCCCATTTGTTCCAAACGTCCGTCTTTGACAC
CTTGCGGTGCATCATCTTCTCGGCGTATCACCCGGGGTCACCAGCACAAA
ACAGAACGCTGGGGCATTTTCTCGAACGGACAGTCTAGCCTCTCTGCGAT
TGTAGACCTGTACTAAGGGCATCGATTGTAGACCTGTACTAAGTGCATCG
ATTGTAGACCTGTACCAAGAGCATCACTCCCGTTGACCTCTGGTTCCATC
TTTGCCCTCATTTTCTTTCTTTTCGTCTCTAGGTGAAGAACGTACGTCGT
CATTATCCGACGAGCTGATAAACTGTCCTCTTCCTTTTTTTTTGTAGGCT
TTTTTTTTTTCCGCCATCCGGTTAGCTGACTATCCTCCTTTGTCTGTTTT
TATTTTACGTTTTTTTTTCTTCTTTTTTGTTTTTCTTCGTTTCGGTGGCA
AAGATATGTCGCAATGATCCACGACGAGCTGACGGACCTGGATGACGTCG
ACGTGACCATGTCGGGCTGGCTGTACAAGTGGCGGGACCGCGACGCGTAC
CTTTGGGGATCCGTCAAGTGAGATCTACAATTTCTCCCTGGTTGGTTTCT
ACTATATTGTTTTTTTTTTTCTTGATATGTTTCATTTCCTATCGTTTTTG
TTCTATCCTCCGTATGTGTTTGTTTTATTTATTTATTTATTTACTTGTCT
ATTTATTTTTATACTTGTCTATTTATTTATTTATTAATTTTTAATTTCTT
TAATTATTTATTCATTTTGCCGCGAGTTGGGATTTGCGTGCAAATTTTTC
GTCGTTCGCCGCGTCGGCGCGACGCGTTCAATTGACGATGCGAAGGAACA
GCCTGCAATTTTCCGTGTCAAGCGTTTCGTCTTTCGGACACAGCAGTAGC
CCGTCGATGCGATACCCGTCTTCTCACTTCTCATTGGCCGAGTGCCTACA
GTACGTTGCGTCTTGACATCACCTACAGAACATTTTTAAAACACACAACG
CGCACGCACAAAACACTACACCACTTTTCTACATCCGACGACCACTTTTT
TCTACATCCTGACGCGTGCCTCTGCGAACTGTTTAATTTGTTCTGTTCCG
ATGACACGCGTGTGTCGCAGGTGGGTGCCGCGGTTCTTCACTCTTTGCGA
CGGCAAGCTTAGCACGTACAAGTCGGACCAGAGCACCGAGGCGGAGTCGG
TGATGAGCCTTAAGCGGTGCGTGCTGCGAGACGAGGGCACGCGGACAGGG
AAGGCGCCGGGTCGCGGAAAGGTTTGCGTGTTGCGAGATAGGTGGGGGGG
AGGGAGAGGACGAGAGAGCGCGGGAGAGAGAGAGAAAGTCATTCACAGAG
ACGCGCAACTAGACATCCCAGCAAAGTCACTGATTACCCGTCGTTATTCG
CGTCTTCCGAAGTTACCACGCCGGCGGGCGTTTCATCCAACAGAATCAGC
GGTAAAAGATGGTTTCGAGTGGTGCGGTAAGAGAACCTGTCCGGTTTATT
AATAGCAGTAGCCTAGGGTATCGATATCAACACTCACTTGATCGAACAAC
GCCTTGTTGCTCGTATACCGCGTACAATGCACCAAGGGCTCTTGGCAATG
CACGCACACCGAGGGTTCGCTTCACACGGTGGTAGCGTCCCTCCCTTGCC
TTGCCCCTGTTTTTTCTCGTGCCGTTTCAGCCTCGTCCCGAGTACCACTT
ATTCGGACTTTACCTGGAGGGGGCGATGCAGAGGGGACCCGATGCGGGGG
TGCTGCTTCGCCTGAGCACTGAGAAGGAGGACGTGGCGGACAGGTAGTAT
AGCTGCAAGTTTGTTGTTGTTGTTGTAGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTAGTAGTTTTAATTGCTT
TTGTTGATGATGCTGTTGTTGTTGTAGTTTTAATTGCTTTTGTTGATGGT
GCTGTTGTTGTTGTTGTTGTTGTAGTTTTAGTTGCTTTTGTTGATGGTGT
TGTTGTTGTTGTAGTTTTAATTGCTTTTGTTGATGGTGCTATTGTTTGTG
TTGTTGTAGTAGTAGTTTTAATTGCTTGTTGTTGATGGTGTTGTTGTTGT
TGTAGTTTTAATTGCTTTTGTTGTTGATGGTGCTGTTGTTGGTGTTGTTT
CAATTGTTTTTTGTTCTGGTGTTGGTGCTGTTGGTAGTGGTGTCGGCGTT
GGGTGTTGGTGTTGACAATGATGACTAGTCCCTCAGAGAGGGCCTTCTCT
CGTGGTTGCTGCAAGCATGGTCGTCGCTGTGCCGTTGTCTCCAATATACC
CCCCCCCCCTCCAAACCGATTTTGCGGCAGGTGGATTTCCACACTGGGGG
AGGTCTGCGCTCAGGAGGAAGACCTCAGCTCTCCTCCCTCTTCTCCCAGC
GCGTCAGAGGTCGACCAAGCAGAGGCCACGCCGTCGTCGTCGGCCTGCTC
GTCTCCGGTGGTCACAGCGTCCATGCCTCCTCCTCCCCCCCCCGTAGACG
GGGGGGACTCTGCGCCGCGCATGAGCCGGATGTCGTCGGTGGGCATGTCG
CGGAAGGGCAGCTGGGATGTGGCGGGAGGTCTTCAGAACCTGAAGAGGTG
A
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14296:8..3258+

>mRNA_E-fasciculatus_F_contig14296.3134.1 ID=mRNA_E-fasciculatus_F_contig14296.3134.1|Name=mRNA_E-fasciculatus_F_contig14296.3134.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1560bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14296:8..3258+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGAGGGGGGGGCGGCGCGGCGGCGGCGGCGGGAGCAGACAGGAGGAA
GACGTCGGCCGGTCGGTGGGGAGAGGCTGCGGATGCAGAAGAGATGGCGA
GGCTCAGGAAGCACACGGAGTCATTAGAACGGGGGGAGGGGGGGGCGGCG
CGGCGGCGGCGGCGGGAGCAGACAGGAGGAAGACGTCGGCCGGTCGGTGG
GGAGAGGCTGCGGATGCAGAAGAGATGGCGAGGCTCAGGAAGCACACGGA
GTCATTAGAACGATATGTCGCAATGATCCACGACGAGCTGACGGACCTGG
ATGACGTCGACGTGACCATGTCGGGCTGGCTGTACAAGTGGCGGGACCGC
GACGCGTACCTTTGGGGATCCGTCAAATATGTCGCAATGATCCACGACGA
GCTGACGGACCTGGATGACGTCGACGTGACCATGTCGGGCTGGCTGTACA
AGTGGCGGGACCGCGACGCGTACCTTTGGGGATCCGTCAAGTGGGTGCCG
CGGTTCTTCACTCTTTGCGACGGCAAGCTTAGCACGTACAAGTCGGACCA
GAGCACCGAGGCGGAGTCGGTGATGAGCCTTAAGCGGTGCGTGCTGCGAG
ACGAGGGCACGCGGACAGGGAAGGCGCCGGGTCGCGGAAAGGTGGGTGCC
GCGGTTCTTCACTCTTTGCGACGGCAAGCTTAGCACGTACAAGTCGGACC
AGAGCACCGAGGCGGAGTCGGTGATGAGCCTTAAGCGGTGCGTGCTGCGA
GACGAGGGCACGCGGACAGGGAAGGCGCCGGGTCGCGGAAAGCCTCGTCC
CGAGTACCACTTATTCGGACTTTACCTGGAGGGGGCGATGCAGAGGGGAC
CCGATGCGGGGGTGCTGCTTCGCCTGAGCACTGAGAAGGAGGACGTGGCG
GACAGCCTCGTCCCGAGTACCACTTATTCGGACTTTACCTGGAGGGGGCG
ATGCAGAGGGGACCCGATGCGGGGGTGCTGCTTCGCCTGAGCACTGAGAA
GGAGGACGTGGCGGACAGGTGGATTTCCACACTGGGGGAGGTCTGCGCTC
AGGAGGAAGACCTCAGCTCTCCTCCCTCTTCTCCCAGCGCGTCAGAGGTC
GACCAAGCAGAGGCCACGCCGTCGTCGTCGGCCTGCTCGTCTCCGGTGGT
CACAGCGTCCATGCCTCCTCCTCCCCCCCCCGTAGACGGGGGGGACTCTG
CGCCGCGCATGAGCCGGATGTCGTCGGTGGGCATGTCGCGGAAGGGCAGC
TGGGATGTGGCGGGAGGTCTTCAGAACCTGAAGAGGTGAGTGGATTTCCA
CACTGGGGGAGGTCTGCGCTCAGGAGGAAGACCTCAGCTCTCCTCCCTCT
TCTCCCAGCGCGTCAGAGGTCGACCAAGCAGAGGCCACGCCGTCGTCGTC
GGCCTGCTCGTCTCCGGTGGTCACAGCGTCCATGCCTCCTCCTCCCCCCC
CCGTAGACGGGGGGGACTCTGCGCCGCGCATGAGCCGGATGTCGTCGGTG
GGCATGTCGCGGAAGGGCAGCTGGGATGTGGCGGGAGGTCTTCAGAACCT
GAAGAGGTGA
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