mRNA_E-fasciculatus_F_contig14292.3132.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A6H5K7K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K5_9PHAE) HSP 1 Score: 106 bits (265), Expect = 3.550e-27 Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 1
Query: 1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLAKY 171
G+VVATGPGRSSSDGEIVPMSVATGD VKFRPFAGSEVSLQGVDYRV+KV+EVLAKY
Sbjct: 182 GEVVATGPGRSSSDGEIVPMSVATGDFVKFRPFAGSEVSLQGVDYRVMKVNEVLAKY 238
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A2E1VW74_9BACT (Co-chaperonin GroES n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E1VW74_9BACT) HSP 1 Score: 65.5 bits (158), Expect = 1.840e-12 Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLAK 168
G+VVA GPGR + DG M VA GD V + P+AG++V L GV+Y++L+ DE+LAK
Sbjct: 44 GQVVAAGPGRRNKDGSRAEMPVAVGDEVIYGPYAGAKVELNGVEYKILRADEILAK 99
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A7V7SXF9_9BACT (Co-chaperonin GroES n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V7SXF9_9BACT) HSP 1 Score: 65.5 bits (158), Expect = 2.130e-12 Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLAK 168
G+V A GPGR + DG+ + M VA GD+V + +AG+E+ L GVDY+VL+ DE+LAK
Sbjct: 49 GEVSAVGPGRQAKDGKRLEMPVAKGDVVIYGKYAGNEIQLDGVDYKVLRADEILAK 104
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A1Z5KFF1_FISSO (Chaperonin GroES n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFF1_FISSO) HSP 1 Score: 68.2 bits (165), Expect = 2.280e-12 Identity = 29/57 (50.88%), Postives = 45/57 (78.95%), Query Frame = 1
Query: 1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLAKY 171
G+VV GPG+ +S+GE++ M V GD++KFR FAG+EV ++G +Y V+K+ ++LAKY
Sbjct: 185 GEVVKVGPGKMASNGELMTMDVTPGDMIKFRDFAGNEVEIEGKEYSVVKMVDILAKY 241
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A835YMZ7_9STRA (Chaperonin 10-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMZ7_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 9.440e-12 Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query: 1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVD----YRVLKVDEVLAKY 171
GKV+A GPGR+++DG VPM++ GDL+KFR FAGSE+S+ G+ YRV+K ++VL Y
Sbjct: 162 GKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISM-GIGLRTVYRVMKEEDVLVSY 221
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A2V8FKI9_9BACT (Co-chaperonin GroES n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8FKI9_9BACT) HSP 1 Score: 63.2 bits (152), Expect = 2.280e-11 Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLA 165
GKV+A G GR S DG+ VP+ V GD V F ++G E+ L+GV+Y ++K DEVLA
Sbjct: 38 GKVIAAGKGRVSDDGDRVPLDVKAGDTVLFGKYSGQEIKLEGVEYLIMKEDEVLA 92
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: B8CCQ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCQ7_THAPS) HSP 1 Score: 65.5 bits (158), Expect = 2.320e-11 Identity = 28/57 (49.12%), Postives = 45/57 (78.95%), Query Frame = 1
Query: 1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLAKY 171
G+VV GPGR +S+GEI+ + ++ GD VKFR FAG+EV ++G +Y V+++ ++LAK+
Sbjct: 184 GEVVKVGPGRMASNGEIMTVDISVGDEVKFRDFAGNEVQIEGEEYAVVRMTDILAKF 240
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A6B1AGL1_9BACT (Co-chaperonin GroES n=5 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A6B1AGL1_9BACT) HSP 1 Score: 62.4 bits (150), Expect = 3.070e-11 Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLA 165
G VVA GPGR + DGE +PM V+ GD V + +AG+EVSL G DY ++K +VLA
Sbjct: 46 GTVVAVGPGRMNDDGERIPMEVSAGDRVLYGKYAGTEVSLDGDDYLIVKESDVLA 100
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: I5B4X8_9DELT (Co-chaperonin GroES n=6 Tax=Desulfobacterales TaxID=213118 RepID=I5B4X8_9DELT) HSP 1 Score: 60.8 bits (146), Expect = 1.050e-10 Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVL 162
GKVV+TG GR DG+++PM V GD V F + G+EV + GVDY +++ D+VL
Sbjct: 38 GKVVSTGNGRMGEDGKLLPMDVKVGDRVLFSKYGGTEVKIDGVDYLIMRQDDVL 91
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A2M7I0G4_9BACT (Co-chaperonin GroES n=1 Tax=Ignavibacteriales bacterium CG12_big_fil_rev_8_21_14_0_65_30_8 TaxID=1974046 RepID=A0A2M7I0G4_9BACT) HSP 1 Score: 60.8 bits (146), Expect = 1.130e-10 Identity = 25/55 (45.45%), Postives = 41/55 (74.55%), Query Frame = 1
Query: 1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLA 165
G +VA GPGR+S +G++VPMSV GD V + ++GSEV+++G DY +++ ++ A
Sbjct: 41 GTIVAAGPGRTSDEGKVVPMSVKKGDKVLYGKYSGSEVTVEGTDYLIMRESDIFA 95 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14292.3132.1 >prot_E-fasciculatus_F_contig14292.3132.1 ID=prot_E-fasciculatus_F_contig14292.3132.1|Name=mRNA_E-fasciculatus_F_contig14292.3132.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=58bp GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVback to top mRNA from alignment at E-fasciculatus_F_contig14292:56..229+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14292.3132.1 ID=mRNA_E-fasciculatus_F_contig14292.3132.1|Name=mRNA_E-fasciculatus_F_contig14292.3132.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=174bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14292:56..229+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14292:56..229+ >mRNA_E-fasciculatus_F_contig14292.3132.1 ID=mRNA_E-fasciculatus_F_contig14292.3132.1|Name=mRNA_E-fasciculatus_F_contig14292.3132.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=348bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14292:56..229+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |