mRNA_E-fasciculatus_F_contig14292.3132.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14292.3132.1
Unique NamemRNA_E-fasciculatus_F_contig14292.3132.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A6H5K7K5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K5_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.550e-27
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 1
Query:    1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLAKY 171
            G+VVATGPGRSSSDGEIVPMSVATGD VKFRPFAGSEVSLQGVDYRV+KV+EVLAKY
Sbjct:  182 GEVVATGPGRSSSDGEIVPMSVATGDFVKFRPFAGSEVSLQGVDYRVMKVNEVLAKY 238          
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A2E1VW74_9BACT (Co-chaperonin GroES n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E1VW74_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 1.840e-12
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLAK 168
            G+VVA GPGR + DG    M VA GD V + P+AG++V L GV+Y++L+ DE+LAK
Sbjct:   44 GQVVAAGPGRRNKDGSRAEMPVAVGDEVIYGPYAGAKVELNGVEYKILRADEILAK 99          
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A7V7SXF9_9BACT (Co-chaperonin GroES n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V7SXF9_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 2.130e-12
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLAK 168
            G+V A GPGR + DG+ + M VA GD+V +  +AG+E+ L GVDY+VL+ DE+LAK
Sbjct:   49 GEVSAVGPGRQAKDGKRLEMPVAKGDVVIYGKYAGNEIQLDGVDYKVLRADEILAK 104          
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A1Z5KFF1_FISSO (Chaperonin GroES n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFF1_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 2.280e-12
Identity = 29/57 (50.88%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLAKY 171
            G+VV  GPG+ +S+GE++ M V  GD++KFR FAG+EV ++G +Y V+K+ ++LAKY
Sbjct:  185 GEVVKVGPGKMASNGELMTMDVTPGDMIKFRDFAGNEVEIEGKEYSVVKMVDILAKY 241          
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A835YMZ7_9STRA (Chaperonin 10-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMZ7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 9.440e-12
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVD----YRVLKVDEVLAKY 171
            GKV+A GPGR+++DG  VPM++  GDL+KFR FAGSE+S+ G+     YRV+K ++VL  Y
Sbjct:  162 GKVLAVGPGRTTADGNTVPMTLQPGDLIKFRDFAGSEISM-GIGLRTVYRVMKEEDVLVSY 221          
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A2V8FKI9_9BACT (Co-chaperonin GroES n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8FKI9_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 2.280e-11
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLA 165
            GKV+A G GR S DG+ VP+ V  GD V F  ++G E+ L+GV+Y ++K DEVLA
Sbjct:   38 GKVIAAGKGRVSDDGDRVPLDVKAGDTVLFGKYSGQEIKLEGVEYLIMKEDEVLA 92          
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: B8CCQ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCQ7_THAPS)

HSP 1 Score: 65.5 bits (158), Expect = 2.320e-11
Identity = 28/57 (49.12%), Postives = 45/57 (78.95%), Query Frame = 1
Query:    1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLAKY 171
            G+VV  GPGR +S+GEI+ + ++ GD VKFR FAG+EV ++G +Y V+++ ++LAK+
Sbjct:  184 GEVVKVGPGRMASNGEIMTVDISVGDEVKFRDFAGNEVQIEGEEYAVVRMTDILAKF 240          
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A6B1AGL1_9BACT (Co-chaperonin GroES n=5 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A6B1AGL1_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 3.070e-11
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLA 165
            G VVA GPGR + DGE +PM V+ GD V +  +AG+EVSL G DY ++K  +VLA
Sbjct:   46 GTVVAVGPGRMNDDGERIPMEVSAGDRVLYGKYAGTEVSLDGDDYLIVKESDVLA 100          
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: I5B4X8_9DELT (Co-chaperonin GroES n=6 Tax=Desulfobacterales TaxID=213118 RepID=I5B4X8_9DELT)

HSP 1 Score: 60.8 bits (146), Expect = 1.050e-10
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVL 162
            GKVV+TG GR   DG+++PM V  GD V F  + G+EV + GVDY +++ D+VL
Sbjct:   38 GKVVSTGNGRMGEDGKLLPMDVKVGDRVLFSKYGGTEVKIDGVDYLIMRQDDVL 91          
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Match: A0A2M7I0G4_9BACT (Co-chaperonin GroES n=1 Tax=Ignavibacteriales bacterium CG12_big_fil_rev_8_21_14_0_65_30_8 TaxID=1974046 RepID=A0A2M7I0G4_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.130e-10
Identity = 25/55 (45.45%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    1 GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKVDEVLA 165
            G +VA GPGR+S +G++VPMSV  GD V +  ++GSEV+++G DY +++  ++ A
Sbjct:   41 GTIVAAGPGRTSDEGKVVPMSVKKGDKVLYGKYSGSEVTVEGTDYLIMRESDIFA 95          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14292.3132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7K5_9PHAE3.550e-2792.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2E1VW74_9BACT1.840e-1253.57Co-chaperonin GroES n=1 Tax=Planctomycetes bacteri... [more]
A0A7V7SXF9_9BACT2.130e-1253.57Co-chaperonin GroES n=1 Tax=Planctomycetes bacteri... [more]
A0A1Z5KFF1_FISSO2.280e-1250.88Chaperonin GroES n=2 Tax=Fistulifera solaris TaxID... [more]
A0A835YMZ7_9STRA9.440e-1254.10Chaperonin 10-like protein n=1 Tax=Tribonema minus... [more]
A0A2V8FKI9_9BACT2.280e-1152.73Co-chaperonin GroES n=1 Tax=Acidobacteria bacteriu... [more]
B8CCQ7_THAPS2.320e-1149.12Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A6B1AGL1_9BACT3.070e-1154.55Co-chaperonin GroES n=5 Tax=Gemmatimonadales bacte... [more]
I5B4X8_9DELT1.050e-1050.00Co-chaperonin GroES n=6 Tax=Desulfobacterales TaxI... [more]
A0A2M7I0G4_9BACT1.130e-1045.45Co-chaperonin GroES n=1 Tax=Ignavibacteriales bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14292contigE-fasciculatus_F_contig14292:56..229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.1
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog207559.Dde_2474
Preferred namegroS
KEGG koko:K04078
GOsGO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008150,GO:0009987,GO:0010033,GO:0035966,GO:0042221,GO:0042802,GO:0043167,GO:0043169,GO:0046872,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0061077
EggNOG free text desc.Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
EggNOG OGs1MZ2X@1224,2MCH7@213115,2WPZP@28221,42U7E@68525,COG0234@1,COG0234@2
COG Functional cat.O
Best tax levelDesulfovibrionales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927920.2626698-CDS-E-fasciculatus_F_contig14292:55..2291622927920.2626698-CDS-E-fasciculatus_F_contig14292:55..229Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14292 56..229 +
1695995751.0934908-CDS-E-fasciculatus_F_contig14292:55..2291695995751.0934908-CDS-E-fasciculatus_F_contig14292:55..229Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14292 56..229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14292.3132.1prot_E-fasciculatus_F_contig14292.3132.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14292 56..229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14292.3132.1

>prot_E-fasciculatus_F_contig14292.3132.1 ID=prot_E-fasciculatus_F_contig14292.3132.1|Name=mRNA_E-fasciculatus_F_contig14292.3132.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=58bp
GKVVATGPGRSSSDGEIVPMSVATGDLVKFRPFAGSEVSLQGVDYRVLKV
DEVLAKY*
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mRNA from alignment at E-fasciculatus_F_contig14292:56..229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14292.3132.1 ID=mRNA_E-fasciculatus_F_contig14292.3132.1|Name=mRNA_E-fasciculatus_F_contig14292.3132.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=174bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14292:56..229+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCAAGGTCGTTGCTACGGGGCCCGGGCGAAGCTCTTCGGACGGGGAGAT CGTCCCGATGTCGGTGGCGACCGGGGACTTGGTCAAGTTCAGGCCCTTCG CGGGGTCGGAGGTTTCTCTGCAAGGGGTGGACTACCGTGTCCTGAAGGTC GACGAGGTGCTGGCCAAGTACTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14292:56..229+

>mRNA_E-fasciculatus_F_contig14292.3132.1 ID=mRNA_E-fasciculatus_F_contig14292.3132.1|Name=mRNA_E-fasciculatus_F_contig14292.3132.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=348bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14292:56..229+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCAAGGTCGTTGCTACGGGGCCCGGGCGAAGCTCTTCGGACGGGGAGAT
CGTCCCGATGTCGGTGGCGACCGGGGACTTGGTCAAGTTCAGGCCCTTCG
CGGGGTCGGAGGTTTCTCTGCAAGGGGTGGACTACCGTGTCCTGAAGGTC
GACGAGGTGCTGGCCAAGTACTGAGGCAAGGTCGTTGCTACGGGGCCCGG
GCGAAGCTCTTCGGACGGGGAGATCGTCCCGATGTCGGTGGCGACCGGGG
ACTTGGTCAAGTTCAGGCCCTTCGCGGGGTCGGAGGTTTCTCTGCAAGGG
GTGGACTACCGTGTCCTGAAGGTCGACGAGGTGCTGGCCAAGTACTGA
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