mRNA_E-fasciculatus_F_contig1429.3131.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1429.3131.1
Unique NamemRNA_E-fasciculatus_F_contig1429.3131.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1429.3131.1 vs. uniprot
Match: D7G3J4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3J4_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 1.890e-80
Identity = 128/135 (94.81%), Postives = 130/135 (96.30%), Query Frame = 2 
Query:  116 EASVKMVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIV--LTGRINKCGVISPRFDMPLHDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 514
            + S +MVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIV  LTGRINKCGVISPRFDMPL DVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY
Sbjct:   53 QVSREMVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIVVELTGRINKCGVISPRFDMPLQDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 187
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1429.3131.1 vs. uniprot
Match: A0A836CHB7_9STRA (Ribosomal protein S8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHB7_9STRA)

HSP 1 Score: 233 bits (594), Expect = 3.940e-72
Identity = 114/130 (87.69%), Postives = 123/130 (94.62%), Query Frame = 2 
Query:  131 MVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIV--LTGRINKCGVISPRFDMPLHDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 514
            MV+M VLADTLKT+SNAEKRGKRQVLIRP SKVVVKFLQ MQK+GYIGEFEIVDDHRAGKIV  LTGRINKCGVISPRFD+PL D+EKW+ NLLPARGFGHIVL+TT+GIMDHEEARRKHTGGK+LGFFY
Sbjct:    1 MVRMSVLADTLKTLSNAEKRGKRQVLIRPSSKVVVKFLQCMQKHGYIGEFEIVDDHRAGKIVIELTGRINKCGVISPRFDVPLADIEKWMVNLLPARGFGHIVLSTTYGIMDHEEARRKHTGGKVLGFFY 130
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1429.3131.1 vs. uniprot
Match: F0Y589_AURAN (Uncharacterized protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0Y589_AURAN)

HSP 1 Score: 224 bits (571), Expect = 1.090e-68
Identity = 108/130 (83.08%), Postives = 120/130 (92.31%), Query Frame = 2 
Query:  131 MVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIV--LTGRINKCGVISPRFDMPLHDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 514
            MV+M VLAD LK+ISNAEKRGKRQVLIRPCSKV+VKFLQ MQK+GYIGEFEIVDDHR+GKIV  LTGRINKCGVISPRFD+ + D+E W+NNLLP+R FGH+VL+TTFGIMDHEEARRK TGGKILGFFY
Sbjct:    1 MVRMSVLADCLKSISNAEKRGKRQVLIRPCSKVIVKFLQTMQKHGYIGEFEIVDDHRSGKIVIELTGRINKCGVISPRFDVEIKDMESWINNLLPSRQFGHLVLSTTFGIMDHEEARRKRTGGKILGFFY 130
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1429.3131.1 vs. uniprot
Match: A0A2D4CDH8_PYTIN (40S ribosomal protein S15a n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDH8_PYTIN)

HSP 1 Score: 222 bits (565), Expect = 8.640e-68
Identity = 107/130 (82.31%), Postives = 119/130 (91.54%), Query Frame = 2 
Query:  131 MVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIV--LTGRINKCGVISPRFDMPLHDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 514
            MV+M VLAD LKT+ NAEKRGKRQV+IRP SKV+VKFLQVMQKNGYIGEFEI+DDHR+GKIV  L GRINKCGVISPRFD+ L D+EKWVNNLLP+R FGHIVL+TTFGIMDH EARRKHTGGK++GFFY
Sbjct:    1 MVRMSVLADCLKTMYNAEKRGKRQVMIRPSSKVIVKFLQVMQKNGYIGEFEIIDDHRSGKIVVELKGRINKCGVISPRFDIKLQDMEKWVNNLLPSRLFGHIVLSTTFGIMDHHEARRKHTGGKVIGFFY 130
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1429.3131.1 vs. uniprot
Match: A0A8E8PJK2_9STRA (Ribosomal protein S15A n=2 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJK2_9STRA)

HSP 1 Score: 220 bits (560), Expect = 4.830e-67
Identity = 104/130 (80.00%), Postives = 120/130 (92.31%), Query Frame = 2 
Query:  131 MVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIV--LTGRINKCGVISPRFDMPLHDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 514
            MV+M VLAD LKT+SNAEKRGKRQVL+RP SKV++KFLQVMQKNGY+GEFE+VDD RAGKIV  LTGRINKCGVISPRFD+P+ D+EKWV NLLP+R FGH+VLTT+ GIMDHEEAR++HTGGK+LGFFY
Sbjct:    1 MVRMSVLADALKTLSNAEKRGKRQVLLRPSSKVIIKFLQVMQKNGYVGEFELVDDRRAGKIVVNLTGRINKCGVISPRFDVPVKDMEKWVANLLPSRQFGHVVLTTSQGIMDHEEARKRHTGGKVLGFFY 130
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1429.3131.1 vs. uniprot
Match: A0A7S3PA85_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PA85_9STRA)

HSP 1 Score: 219 bits (558), Expect = 9.620e-67
Identity = 105/130 (80.77%), Postives = 118/130 (90.77%), Query Frame = 2 
Query:  131 MVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIV--LTGRINKCGVISPRFDMPLHDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 514
            MV+M VLAD LKT+SNAEKRGKRQVL+RP SKV+VKFLQ MQK+GYIGEFEIVDDHR+GKIV  L GRINKCGV+SPRFD+ + D+EKWV NLLP+R FGHIVLTT +GIMDHEEARRKHTGGK+LGFFY
Sbjct:    1 MVRMSVLADALKTMSNAEKRGKRQVLLRPSSKVIVKFLQCMQKHGYIGEFEIVDDHRSGKIVVELNGRINKCGVVSPRFDVQVKDMEKWVGNLLPSRQFGHIVLTTAYGIMDHEEARRKHTGGKVLGFFY 130
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1429.3131.1 vs. uniprot
Match: A0A485KLL4_9STRA (Aste57867_8878 protein n=32 Tax=Eukaryota TaxID=2759 RepID=A0A485KLL4_9STRA)

HSP 1 Score: 219 bits (557), Expect = 1.360e-66
Identity = 105/130 (80.77%), Postives = 116/130 (89.23%), Query Frame = 2 
Query:  131 MVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIV--LTGRINKCGVISPRFDMPLHDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 514
            MV+M VLAD LKTI NAEKRGKRQVL+RP SKV+VKFLQ MQKNGYIGEFEIVDDHR GKIV  L GRINKCGVISPRFD+   D+EKW+NNLLP+R FGHIVL+TT+GIMDH EARRKHTGGK++GFFY
Sbjct:    1 MVRMSVLADCLKTIYNAEKRGKRQVLVRPSSKVIVKFLQTMQKNGYIGEFEIVDDHRGGKIVVELRGRINKCGVISPRFDIKQQDMEKWINNLLPSRQFGHIVLSTTYGIMDHNEARRKHTGGKVIGFFY 130
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1429.3131.1 vs. uniprot
Match: Q4S7R4_TETNG (40S ribosomal protein S15a n=51 Tax=cellular organisms TaxID=131567 RepID=Q4S7R4_TETNG)

HSP 1 Score: 218 bits (554), Expect = 3.810e-66
Identity = 105/130 (80.77%), Postives = 119/130 (91.54%), Query Frame = 2 
Query:  131 MVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIV--LTGRINKCGVISPRFDMPLHDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 514
            MV+M VLAD LK+I+NAEKRGKRQVLIRPCSKV+V+FL VM K+GYIGEFEI+DDHRAGKIV  LTGR+NKCGVISPRFD+ L D+EKW NNLLP+R FG+IVLTT+ GIMDHEEARRKHTGGKILGFF+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDLQLKDLEKWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1429.3131.1 vs. uniprot
Match: S4RYV1_PETMA (40S ribosomal protein S15a n=9 Tax=Vertebrata TaxID=7742 RepID=S4RYV1_PETMA)

HSP 1 Score: 218 bits (554), Expect = 3.810e-66
Identity = 105/130 (80.77%), Postives = 119/130 (91.54%), Query Frame = 2 
Query:  131 MVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIV--LTGRINKCGVISPRFDMPLHDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 514
            MV+M VLAD LK+I+NAEKRGKRQVLIRPCSKV+VKFL VM K+GYIGEFEI+DDHRAGKIV  LTGR+NKCGVISPRFD+ + D+EKW NNLLP+R FG+IVLTT+ GIMDHEEARRKHTGGKILGFF+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQIKDLEKWQNNLLPSRQFGYIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1429.3131.1 vs. uniprot
Match: A0A812JFE9_9DINO (RPS15A protein n=2 Tax=Sar TaxID=2698737 RepID=A0A812JFE9_9DINO)

HSP 1 Score: 218 bits (554), Expect = 3.810e-66
Identity = 105/130 (80.77%), Postives = 120/130 (92.31%), Query Frame = 2 
Query:  131 MVKMGVLADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHRAGKIV--LTGRINKCGVISPRFDMPLHDVEKWVNNLLPARGFGHIVLTTTFGIMDHEEARRKHTGGKILGFFY 514
            MV+M VLAD LKTI NAEKRGKRQVL+RP SKV+VKFLQVMQK+GYIG+FE+VDDHRAGKIV  LTGRINKCGVISPRFD+ + ++EKW+++LLP+R FGHIVLTT+ GIMDHEEARRKHTGGKILGFFY
Sbjct:    1 MVRMSVLADCLKTIYNAEKRGKRQVLVRPASKVIVKFLQVMQKHGYIGDFELVDDHRAGKIVVQLTGRINKCGVISPRFDVTVPEIEKWISSLLPSRQFGHIVLTTSAGIMDHEEARRKHTGGKILGFFY 130
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1429.3131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3J4_ECTSI1.890e-8094.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CHB7_9STRA3.940e-7287.69Ribosomal protein S8 n=1 Tax=Tribonema minus TaxID... [more]
F0Y589_AURAN1.090e-6883.08Uncharacterized protein n=2 Tax=Pelagomonadales Ta... [more]
A0A2D4CDH8_PYTIN8.640e-6882.3140S ribosomal protein S15a n=1 Tax=Pythium insidio... [more]
A0A8E8PJK2_9STRA4.830e-6780.00Ribosomal protein S15A n=2 Tax=Placidida sp. TaxID... [more]
A0A7S3PA85_9STRA9.620e-6780.77Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A485KLL4_9STRA1.360e-6680.77Aste57867_8878 protein n=32 Tax=Eukaryota TaxID=27... [more]
Q4S7R4_TETNG3.810e-6680.7740S ribosomal protein S15a n=51 Tax=cellular organ... [more]
S4RYV1_PETMA3.810e-6680.7740S ribosomal protein S15a n=9 Tax=Vertebrata TaxI... [more]
A0A812JFE9_9DINO3.810e-6680.77RPS15A protein n=2 Tax=Sar TaxID=2698737 RepID=A0A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1429contigE-fasciculatus_F_contig1429:7960..14885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.6
Seed ortholog evalue1e-66
Seed eggNOG ortholog2880.D7G3J4
Preferred namerps15a
KEGG koko:K02957
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009058,GO:0009059,GO:0009987,GO:0010259,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048856,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0096@1,KOG1754@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons5
Model size1423
Cds size516
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927920.117352-UTR-E-fasciculatus_F_contig1429:7959..79601622927920.117352-UTR-E-fasciculatus_F_contig1429:7959..7960Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1429 7960..7960 +
1695995751.0244114-UTR-E-fasciculatus_F_contig1429:7959..79601695995751.0244114-UTR-E-fasciculatus_F_contig1429:7959..7960Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1429 7960..7960 +
1622927920.2206924-UTR-E-fasciculatus_F_contig1429:13979..148851622927920.2206924-UTR-E-fasciculatus_F_contig1429:13979..14885Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1429 13980..14885 +
1695995751.0824478-UTR-E-fasciculatus_F_contig1429:13979..148851695995751.0824478-UTR-E-fasciculatus_F_contig1429:13979..14885Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1429 13980..14885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927920.1322944-CDS-E-fasciculatus_F_contig1429:7960..80891622927920.1322944-CDS-E-fasciculatus_F_contig1429:7960..8089Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1429 7961..8089 +
1695995751.034934-CDS-E-fasciculatus_F_contig1429:7960..80891695995751.034934-CDS-E-fasciculatus_F_contig1429:7960..8089Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1429 7961..8089 +
1622927920.1453602-CDS-E-fasciculatus_F_contig1429:9753..98861622927920.1453602-CDS-E-fasciculatus_F_contig1429:9753..9886Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1429 9754..9886 +
1695995751.0441504-CDS-E-fasciculatus_F_contig1429:9753..98861695995751.0441504-CDS-E-fasciculatus_F_contig1429:9753..9886Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1429 9754..9886 +
1622927920.174801-CDS-E-fasciculatus_F_contig1429:11299..113521622927920.174801-CDS-E-fasciculatus_F_contig1429:11299..11352Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1429 11300..11352 +
1695995751.0559351-CDS-E-fasciculatus_F_contig1429:11299..113521695995751.0559351-CDS-E-fasciculatus_F_contig1429:11299..11352Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1429 11300..11352 +
1622927920.193815-CDS-E-fasciculatus_F_contig1429:11856..119581622927920.193815-CDS-E-fasciculatus_F_contig1429:11856..11958Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1429 11857..11958 +
1695995751.0641775-CDS-E-fasciculatus_F_contig1429:11856..119581695995751.0641775-CDS-E-fasciculatus_F_contig1429:11856..11958Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1429 11857..11958 +
1622927920.2080035-CDS-E-fasciculatus_F_contig1429:13880..139791622927920.2080035-CDS-E-fasciculatus_F_contig1429:13880..13979Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1429 13881..13979 +
1695995751.0723999-CDS-E-fasciculatus_F_contig1429:13880..139791695995751.0723999-CDS-E-fasciculatus_F_contig1429:13880..13979Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1429 13881..13979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1429.3131.1prot_E-fasciculatus_F_contig1429.3131.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1429 7961..13979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1429.3131.1

>prot_E-fasciculatus_F_contig1429.3131.1 ID=prot_E-fasciculatus_F_contig1429.3131.1|Name=mRNA_E-fasciculatus_F_contig1429.3131.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=172bp
MGGFVGHLAVSVAGPPCPRFAAHILHSPVVGPLAARHAEASVKMVKMGVL
ADTLKTISNAEKRGKRQVLIRPCSKVVVKFLQVMQKNGYIGEFEIVDDHR
AGKIVLTGRINKCGVISPRFDMPLHDVEKWVNNLLPARGFGHIVLTTTFG
IMDHEEARRKHTGGKILGFFY*
back to top

mRNA from alignment at E-fasciculatus_F_contig1429:7960..14885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1429.3131.1 ID=mRNA_E-fasciculatus_F_contig1429.3131.1|Name=mRNA_E-fasciculatus_F_contig1429.3131.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6926bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1429:7960..14885+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AATGGGAGGCTTTGTCGGGCATTTAGCAGTATCGGTTGCGGGTCCCCCCT
GCCCACGGTTTGCGGCTCACATCCTCCATTCTCCGGTGGTGGGACCTTTA
GCTGCGCGTCACGCAGAAGCCTCCGTCAAGGTAAGCCAGAATTGCTGCTA
CTTCTGCTAGTTCCTGCCGTGGTCGGCATCGTGACCGTGTCATTGGATTC
AAAAGTGTCGAGAAGAGGTGTGTGTACCATTGGTTTGCGAGGAGCCTTTG
CCTGGCGGTGCTGTGGGCTGGGTGGATGCTGAGGCTTGCTGCGGCTAGAG
CTCGTGCAAAGAGGGCCAGTGGAAGGCTGGCAGTGTGTTGGTGATGGGCC
CAGAAACTGAAGGCAGATGGGATGTTGTGTGGGCCTCGCTTGCCTCTCAG
CAAAAAGCATGCTCTACTATTGGAGGGGCTTGCACCGATGTGTGCTGTGA
TAGCGAGTGTACAAGCCTATGGCCCAGTATCAACACACAGCCAGCAGCAG
CACTGCCCTGCAGCAGTTACGACAAGCATTATCCCGTCGTTGCCATCAGC
TTGGGGAGCATAGCCTCTGTGTTTACAGGCTGTGTTCTTGTCACCTTTGT
GCAAAAGTATAACCTGAGCCCGAAGCACCTGTGTTGCTAGTGAACTCGCG
GGATGCAAGGGGAAGGGTGTAGTTGTGAGAGCGTACTGCATGGAAATGTG
GAAGGGTTGTCGCACGCATAGCCGTGGCAGCGTCCACGTTGCCATCCGTC
CCCCGCTGCAGTTGGTTTGATGTCTTCGCGCCCATCGTACATATACTTAA
CCATTTTCAATGGTCGCTGTAGTATACCACTGCTTGATCTTCGCCCGCCT
GCGGCAAGTGTAGCAGACGAAGTGGCCTGGCAACACGTTTTCTCTGCAGG
AGAGGGCGTTGTGTACAGAGTAGGTTGCAATACACATCCTGGGTCGTTTT
CAAAAGCTCGATTACTACAGCAGTTAAACTACTCTTCACGACGACGAGGA
GGATGCGAAATTCAGGGCATACGTTCCTGGAAAGCTCTTGACGGGACGGT
GCCAATGCCTCCGTTTTGCCACGGTTTTCAGCACCGTCACTGCTACGTTG
CTGCAGGATAGTCGAGCTCTAGAAATTGGTCCAGGGGGTGTGGTATCTTG
TGCAACCTAGATACAACATCGACCCCCTGAGGGGGTCAGAGAGATGACCG
AGATCGTGCTGCATGGACAAGGGAATACACCCCGACATGATTGCTGGTTC
CTTGCCTCCTCTGTATTTTCCCATCATGCCAAACTGGTGTTCCAGTAGGT
GGACCCGTGTTTATTCCGCGCAACCGGGTGCGTTTGGTATGTAGACTAGA
CCCGATCATCGGTCGGTGCGGTGTGTTGTGGCATGCCACGTGATGTCGAC
AATGCGACCGGGCGATAGGTGTGCCCGCTGATGTCCCCTGCGCCGTTGTT
AGCACATGGAAAACCTTGACTCTCTCAGCAGCACTACTTTGATTCCAAGA
GTAGGACAGCAGTACAGTCCGAAACACTTGCAGCGGCACCTTCCGTGGCG
ACCCACGTCCAGCGGCGTTCCTTTGACGGCGTTATTGCACGCTCGCGCCG
AAACGTTACTCATGTTTCATACGACGAAAAAAATGTCTCGAGAGAAGACG
GTTACATTCACAACCGGCGAAGCTAGATATTGTCGTATTTGGCCTTATCT
CACTCTTCCGTACGTTCCTCTTGTGTCGATGTCCATGTTCCACTTGCATG
TTTCTTGACGTTTTTTGCGATCATCCGAACAACCAACAACGCAGATGGTG
AAAATGGGGGTGCTCGCCGACACTCTGAAGACCATCTCCAACGCGGAGAA
GCGCGGAAAGAGGCAGGTGCTGATCCGGCCATGCTCCAAGGTTGTGGTCA
AGTTCCTGCAGGTTATGCAGAAGAACGGTGAGAGGACGTGCCATCCGACC
ACTGCTGTAGCCTTTTTTTCTCATAGACGCACCAAGCGTTTGCCATCCTT
TTGCGGAGACCCATAGGCGAAAATGTGACACTCGCACTCGAGTGTACTGA
ATGACGGGCAAACCAAACCGTTCAAGCATTGAATCCTGTCTGGTTTCGAC
ATTTTCCAACACCCGGTAGATTCACTTTCAAAGCTCGATTGCGTCACAAC
CAAGAGGGTGCTATCGAAATCCGACCGACACATGCAAGGAAAGCTCTCGA
CGGTTTGTGCCCAAAACTACCCTTTTCGGCGTTGGCGGCCTGTTGCTTGT
CGAGCAACGGAGTTTCTAAAATCGATTGCACACCTGTGGGTCTCCCACAC
CATAGATTTTGACGTGGATTGCCGTCGTAGACACGTGTGATGGGCACAGC
ACAGCATCAAAGGCGGGCGTGACGCCGGCGTGTCCTCCTCAAAGCACCAC
GAGCGTGTAGCTGTTGCAGGCGCTATTTAGCTTGAGTGCGATCTTCCTTT
TTCCCGCCCCTCTCTGGCAGAGTTTGGCAGCTGCGAGTCCTGTTTGCCAC
CACCGCACTATCGTAAATTACAAGACGTAGAGCAGCCGTGGGTTCTGACT
TCGTGTCCGCTTAATGTTTCCTTGAAGAGCGGACGTGTGTTTGGCGAGGA
AACTTCCCCGCGTGACTCGACCGCTGAACTCAACTCAACAGCTGCTGCCT
GCATGCCGGCTGTTGATGTTTGCACGTACATAGTGTTTCCTGTGGTGGGT
TCTAGCGCTTGAGCCGATTCTACGCCATGCTTTTCTGGTGTTGGAGTTGT
GATTCTGCGGCGTATGTGCTTGTACATCTAGCGGTGTTGTGCTTCGTTTG
GCGTGTGGCCGTGTGGACGGGCTGCGATGCCTATAATTGCTTTTCATGAA
TCGAAATGCTTGGTCGAGGATGACATATGAGCGATTTTTCAAGCCCCTTC
GATACTTCGTCGTCGACCGGTGGTGTATTTTTGCTGTATCGTTGATTTCT
GGCGCAACAAGATATTCTGGTTCTTGTCAATGTCAAGTCTTTCATTGGCA
TCAGGAGATGCAGGTATACCATCTGCGTTGCTGATGCGGACAGCGCGTTT
AAATTGAACGGGATATGTGTCGTGCATTGTAAAAACCAGCTCTCTCCCTC
TGTGACTGCACCCTCCCAACGCCATGTTCACAGGTTTTGGCGGTACTTTT
CTGGCATGGGTCCTTCGTTCCGTGTTGCGTGTGTAACCTGCAACTAACTG
CCTTCAGTGACGCGGAATCGTAGTTGTGTTGTCCGTGCCTCCTTCGGAAG
TTGAAGCAGACGCTGTTTCCGCACCCAACGGAATTGTGTTGTACTAAACA
TGAGTCCTTTTTTCTCTTTTTGCCTCTTTTTTCTCGTCAGGCTACATTGG
GGAGTTCGAGATCGTGGACGACCACCGCGCGGGGAAGATCGTTGTTGAGG
TGAGGAGCTATGCACAGTACCATTTGTTTTGTTCAGTTGCAACATGCAGA
TGCCACGCCAGCCTTGCCCCGCCGCACCCGTTGGGGTTGCTGCTGCTGCT
GCTGTTGTTGCGGTAGCAGATGCGATTGTCGCCCAGACTGTTGGTACTTT
TGCCGTTATTGAATCAAGTGCCCTGGAGGTCGAGATGACTCGCATTCTCG
GTTATATACCGTGCCTGTTTGCTCCTCTGTAAATGGGAGGTTGTTGTTGA
TCTGCTGGCGGCGTGTGTATGTTTCGGGTCAGCGGGTCGCACGTGCTGTT
GTGCTGGGGCCATGCATGTTGGAATTTGTTGTGCGTTTTCTTTTTTTCTT
TTCCTTACCAGACGTTGTCTCGCTAGTTACCGTGCCCTTGCATAATGTTT
TCGAGGCGAGTCGTTCTGATACGTTCCGTCGACGGATGTCTAACGTTTTG
GCCCGGTGTTGTGGTTCGCGTTTTTTTGTACCGTTTTGTGTCGTCAGCTG
ACCGGCCGTATCAACAAGTGCGGCGTCATCTCCCCCCGGTTCGACATGCC
TCTGCACGATGTCGAGAAGTGGGTAAACAACCTGCTGCCCGCGCGTGGGG
TGAGTGACAGGGGGAGGACGAGGAATGTCCTCTTTAATTTTTGGCGTGTT
CACGGTAATACCCATGTGGATGTAAGGCAGCGGCTGTCGTATGCATATTG
TAGGATCGTTTTTTTTTTTTTCTCAAAATGACCACACGAATCCATCTCCA
TCCATAGAAAAGAGTCAAAGATAGATTGACACTGCTCGCAGAGAAGGGAT
AATTGATGATGCTCCATAGAGATCTGACACCTCTTGTTTGAGGGTCAAAA
TGACCTCGTGAACGCAGCCTTACAATGAAACTGATATCCCTTGACACGCA
GGCAAGCCTATTTCATGTACTCCACCTTCCGAAGGAAAAAATCCTGTAGC
TCGAATAAGTACGTGTAACGTACGACCCTCCAATCGGGTTGCGATATTAG
AAAATCTTTTGTTCCGTTTTCTCCGGAAACGAACGGAATCAGGCAGATGC
GTGTTAAATTTTCTCCCTTGCAATATACTACATCTCCAGCCGTCCTATCC
CATAGGTTCGTGATACCTGGTTTGATCTTTTTTCCATGTATGCAGAACCC
AAGTGCTACAATCGGTTTGAAGCGTTCCGCAATGGAACCAGTTCTGTTTG
AAACCCGGTTGTTTATACTTTGCATTGAAACATAACAGCTGAATTTAGAA
GTGGGAGTGGTGTGTGGGTTTATACCAACAGCAGTATCACACACCTTGGA
TGGGCGTGGTTGCCAATTGCCCTCGCTTGTGGCCTGTGGTCACTCTTCAC
TCTTTCGGATAATTGATGATGCTCCATAGAGATCTGACACCTCTTGTTTG
AGGGTCAAAACGACCTCGTGAACGCAGCCTTACAATGAAACTGATATCCG
AGATAGAAGCCCATTCTAATTTTCTTCTGCTTTCGTTTTTCGACCTATTT
GATTTTTAATTGTTTTGGACTCCTGGTCAGGTATTTTTCACCTTCGGGTG
ACTGCTGACTAACGAACACAGTTGTTGTTATTCTGGTGTTGTGATGTTTG
CCATGAAAAGCTTGTGTCGAGTTGTGGATAATTGATGATGCTCCATAGAG
ATCTGACACCTCTTGTTTGAGGGTCAAAATGACCTCGTGAACGCAGCCTT
ACAATGAAACTGATATCCACTAAGCTCGTTCCTAGAAACCATTATTATTA
TTACTTGCGGAACCTGATTTAGTACGGCGATAGCGCATCCACGCGACCAG
CATAGCCCCGACAGATCTTGGGGGTTCACGCTCAAATTTCCTCGTGTCTG
TATTACGTGATGGGTGTAAAGTTGTAGCTCGTGTTCTTGTCAACCGTAAT
CGATTTGTTCTTTACTCCTACAAGTATTTGTTTTCGAATCTCTTTTCAAA
GCGTTGCTTCTTTCAGAGAAACATAGTTCCGAAGCCGTCTAGCTACGGTT
CAGCCGGTGTGAAAGGCGGACTAAAATACAGCTGTCAAAGTTTCCGGCGT
TTCGAAATATGTCTTGGGATAAACGTGTTATATAATGATGCTCCGGTGTC
GTGGATAAATGATGATTCCTCATAGAGATCTGACACCTCTTGTTTGAGGG
TCAAAACGACCTCATGAACGCAGCCTTACAATGAAACTGATATCCACATC
AAAGGTACATTTTTGTCCCTCTATTTCTGAACTATTAATTACGATGTCAA
GATTTTTTTTGTTACATCAGAGTTGGAGCCAGCACTCATTTTGCCTTTGC
TGACCCTGTCGTGCCCATTTTTCGTTCCATTTCTCCCCAACCGTTCGGAC
ATTTGCCCCGACGACCATGTCAGTTCCATGCTACTTGGTATTTGTGCAAA
CAGCAGCCAAATATCATGCTTCCCTTGGATGATCTCAGCGTAATTCGTCA
ATTTTATACCCGATGTCCCCGCGTCGACTCGTCGGTCGTTTCTGTGTCCG
TCCCGTTTCGAACGAAATCAGTTCGGACACATCGTCTTGACGACCACGTT
CGGCATCATGGACCACGAGGAGGCGCGCCGCAAGCACACCGGTGGCAAGA
TCCTCGGCTTCTTCTACTAACGACCCGCTAGCCGTATTCCACCCGACGTC
ATGGCATGGAACAGCGGGGGGCGTGACCGCTACGGGCGGGACTTCACTCT
GCTGGCCTCAGGATCGATCGCGTGCAATATTAGAAACGAGATCGTTTCAG
TATGCACCTGTTCGCTGTTTTTAGCCTCTGTTTTTCTTTCTTTGGCTGAT
GAGAAGGCAGTGCGTTGTTAGGGGGCGGCGGGCGGCTGTGGTTGGTTTTT
GAGCGCCACTACTGTTGTTGCGACGACCGTGCGGGGAAGAGGGGGCTTTA
ACCACCAGCGTGTGGACCGGAGAACAAAAAAAACGAAAATAAAAAATTAC
AAAAACTGATGACTGCACGTCGTATACCACCCGCATATATCACACTGCTG
TGGCCTGATTGTGCCACTCACACGGCAAAGCATCAAAAGATCATCGGTCA
ATTGAGCGTCGTGCGGAACGCGATTGGGCACCACGGTACAGCGTGATTTT
GTTGCAATCGTGGCAGAACTTGAAGCGTATGCATGGTGTGTGAGGTGTTG
CCGTTTCGGACCCCCCGATCCTTACTTCAAGCCTTTCTACGGGGCTGTTC
TCTGTTCTGTTCTGACGGATGGACGAGCACGAGGAGATGCGCTCGCTGAC
AACGCACCGCCTGCGTCTGAAAACTTGCTCCATTTCTCATGTGCACGAAA
TTGCTGCGAATCTCCTCCGTCACACAGCCTCTCTCTCGGTACACTGAAGT
CCGCATTCAAACAAGACTTGACAAACCTGAACTAAGTCTGGCCCCAAGCT
GTCTGTGTTGTGCGGGGTGCGACATATTTTTCTGTTCCTGCAAGCACCTT
TTGCTATTCTTTCGTTCTCGTGTCTTGGGAACAACAGTCATGTTCTAGTC
TATGACACGTAGCCTTGAGCCATAGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1429:7960..14885+

>mRNA_E-fasciculatus_F_contig1429.3131.1 ID=mRNA_E-fasciculatus_F_contig1429.3131.1|Name=mRNA_E-fasciculatus_F_contig1429.3131.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1032bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1429:7960..14885+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGAGGCTTTGTCGGGCATTTAGCAGTATCGGTTGCGGGTCCCCCCTG
CCCACGGTTTGCGGCTCACATCCTCCATTCTCCGGTGGTGGGACCTTTAG
CTGCGCGTCACGCAGAAGCCTCCGTCAAGATGGGAGGCTTTGTCGGGCAT
TTAGCAGTATCGGTTGCGGGTCCCCCCTGCCCACGGTTTGCGGCTCACAT
CCTCCATTCTCCGGTGGTGGGACCTTTAGCTGCGCGTCACGCAGAAGCCT
CCGTCAAGATGGTGAAAATGGGGGTGCTCGCCGACACTCTGAAGACCATC
TCCAACGCGGAGAAGCGCGGAAAGAGGCAGGTGCTGATCCGGCCATGCTC
CAAGGTTGTGGTCAAGTTCCTGCAGGTTATGCAGAAGAACGATGGTGAAA
ATGGGGGTGCTCGCCGACACTCTGAAGACCATCTCCAACGCGGAGAAGCG
CGGAAAGAGGCAGGTGCTGATCCGGCCATGCTCCAAGGTTGTGGTCAAGT
TCCTGCAGGTTATGCAGAAGAACGGCTACATTGGGGAGTTCGAGATCGTG
GACGACCACCGCGCGGGGAAGATCGTTGCTACATTGGGGAGTTCGAGATC
GTGGACGACCACCGCGCGGGGAAGATCGTTCTGACCGGCCGTATCAACAA
GTGCGGCGTCATCTCCCCCCGGTTCGACATGCCTCTGCACGATGTCGAGA
AGTGGGTAAACAACCTGCTGCCCGCGCGTGGGCTGACCGGCCGTATCAAC
AAGTGCGGCGTCATCTCCCCCCGGTTCGACATGCCTCTGCACGATGTCGA
GAAGTGGGTAAACAACCTGCTGCCCGCGCGTGGGTTCGGACACATCGTCT
TGACGACCACGTTCGGCATCATGGACCACGAGGAGGCGCGCCGCAAGCAC
ACCGGTGGCAAGATCCTCGGCTTCTTCTACTAATTCGGACACATCGTCTT
GACGACCACGTTCGGCATCATGGACCACGAGGAGGCGCGCCGCAAGCACA
CCGGTGGCAAGATCCTCGGCTTCTTCTACTAA
back to top