mRNA_E-fasciculatus_F_contig14282.3128.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: D7FKH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKH2_ECTSI) HSP 1 Score: 181 bits (458), Expect = 1.160e-53 Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 1
Query: 1 ARPISRTQSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNG 273
ARPISRTQSMELSSLARLTHSRHFDTVKHGE GLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNG
Sbjct: 238 ARPISRTQSMELSSLARLTHSRHFDTVKHGEDGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNG 328
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A6H5KU73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU73_9PHAE) HSP 1 Score: 179 bits (454), Expect = 1.200e-53 Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1
Query: 1 ARPISRTQSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNG 273
ARPISRTQSMELSSLARLTHSRHFDTVKHGE GLAIPAGLIVALATSLSARDLHEVLHEEL+YANFINPFRPGDAMTSITYVQRVEQHPNG
Sbjct: 183 ARPISRTQSMELSSLARLTHSRHFDTVKHGEDGLAIPAGLIVALATSLSARDLHEVLHEELIYANFINPFRPGDAMTSITYVQRVEQHPNG 273
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A835YXT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT0_9STRA) HSP 1 Score: 106 bits (264), Expect = 6.010e-26 Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 25 SMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNG 273
SM LSSL RL H RH++TVK+ L IP GL+ AL+T+ +ARDLHE+LHEEL+ NFINP RPGD M I+Y+ E H NG
Sbjct: 122 SMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNG 204
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: W7TH19_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH19_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 9.750e-23 Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 1
Query: 1 ARPISRTQSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGE 276
ARP+S QSM+LSSL RLTH RHF+T K + IP GL++ L S SARDLHEVLHEE++ FIN P D ++S +Y++ ++++ G+
Sbjct: 56 ARPLSPAQSMQLSSLGRLTHERHFNTRKFKRDEMYIPGGLVLGLTLSASARDLHEVLHEEVIECAFINHLHPWDIVSSFSYIKEMDENITGD 147
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A7S2F3A4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F3A4_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 6.470e-21 Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 1 ARPISRTQSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGE 276
ARP+S TQ M+LSS+A+LTH RHF+ + +P GL++ L S SARDLHEVLHEEL+ FIN PGD + +++ V+ VE++ GE
Sbjct: 269 ARPLSTTQIMQLSSIAKLTHERHFNHHVFDIANIYVPGGLVLGLVQSASARDLHEVLHEELVDCKFINNLHPGDTVGALSMVKSVEENVTGE 360
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A7S2RYC8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYC8_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 8.130e-21 Identity = 44/91 (48.35%), Postives = 65/91 (71.43%), Query Frame = 1
Query: 4 RPISRTQSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGE 276
RP+S TQ M+LSSLARLTH RHF+ + + IP GL++ L S SARDLHEVLHE+++ ++IN PGD + +I++V+ +E++ G+
Sbjct: 255 RPLSATQCMQLSSLARLTHERHFNHHVYNIDEIYIPGGLVLGLTASASARDLHEVLHEDVLQCSYINNLHPGDTVGAISFVKAMEENITGD 345
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A7S2UZD2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD2_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 2.810e-20 Identity = 41/91 (45.05%), Postives = 66/91 (72.53%), Query Frame = 1
Query: 4 RPISRTQSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGE 276
RP+++TQ+M+L+SL RLTH RHF+ + + +P G I+ L S ++RDLHE+LHEE+ A +NP RPGD M +I+Y++ V+++ +G+
Sbjct: 248 RPLTQTQTMQLASLMRLTHERHFNRNIFKQDEILVPGGCIMGLMMSATSRDLHEILHEEVQSAALMNPLRPGDMMGAISYIKSVDENLSGD 338
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A812SDL1_SYMMI (Mch protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SDL1_SYMMI) HSP 1 Score: 90.5 bits (223), Expect = 2.380e-19 Identity = 40/91 (43.96%), Postives = 65/91 (71.43%), Query Frame = 1
Query: 4 RPISRTQSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGE 276
RP+S T M+L++LARL H RHF+T K + +P GL+ +LATSL++RDLHEV+ EEL+ F N PG+ ++++T+++ + +H +G+
Sbjct: 247 RPLSPTLVMQLATLARLNHERHFNTRKFSADEILVPGGLVYSLATSLASRDLHEVIFEELVNCAFPNNLAPGETVSAMTFIRHLSEHVSGD 337
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A7S2UCF5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCF5_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 8.060e-19 Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 1
Query: 4 RPISRTQSMELSSLARLTHSRHFDTVKHG-EGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGE 276
R I+ QSM+L+SLARLTH RHFD K+ + + P GL+V L TS S+RDLHE+LHEEL+ F+N P + + +++YVQ V+ G+
Sbjct: 270 RSITLAQSMQLASLARLTHERHFDLRKYSVDTEILCPGGLVVGLTTSASSRDLHEILHEELLNVTFVNALHPNNVVGAMSYVQSVDDTIPGD 361
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A4D9D1N7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1N7_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.330e-18 Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 22 QSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGE 276
+SM+LSSL RLTH RHF+T K + IP GL++ L S SARDLHEVLHEE++ FIN P D ++S +Y++ ++++ G+
Sbjct: 338 ESMQLSSLGRLTHERHFNTRKFKRDEMYIPGGLVLGLTLSASARDLHEVLHEEVIECAFINHLHPWDIVSSFSYIKEMDENITGD 422 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14282.3128.1 >prot_E-fasciculatus_F_contig14282.3128.1 ID=prot_E-fasciculatus_F_contig14282.3128.1|Name=mRNA_E-fasciculatus_F_contig14282.3128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=89bp MELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEback to top mRNA from alignment at E-fasciculatus_F_contig14282:2549..3341- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14282.3128.1 ID=mRNA_E-fasciculatus_F_contig14282.3128.1|Name=mRNA_E-fasciculatus_F_contig14282.3128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=793bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14282:2549..3341- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14282:2549..3341- >mRNA_E-fasciculatus_F_contig14282.3128.1 ID=mRNA_E-fasciculatus_F_contig14282.3128.1|Name=mRNA_E-fasciculatus_F_contig14282.3128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14282:2549..3341- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |