mRNA_E-fasciculatus_F_contig14282.3128.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14282.3128.1
Unique NamemRNA_E-fasciculatus_F_contig14282.3128.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: D7FKH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKH2_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 1.160e-53
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 1
Query:    1 ARPISRTQSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNG 273
            ARPISRTQSMELSSLARLTHSRHFDTVKHGE GLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNG
Sbjct:  238 ARPISRTQSMELSSLARLTHSRHFDTVKHGEDGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNG 328          
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A6H5KU73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU73_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.200e-53
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1
Query:    1 ARPISRTQSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNG 273
            ARPISRTQSMELSSLARLTHSRHFDTVKHGE GLAIPAGLIVALATSLSARDLHEVLHEEL+YANFINPFRPGDAMTSITYVQRVEQHPNG
Sbjct:  183 ARPISRTQSMELSSLARLTHSRHFDTVKHGEDGLAIPAGLIVALATSLSARDLHEVLHEELIYANFINPFRPGDAMTSITYVQRVEQHPNG 273          
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A835YXT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT0_9STRA)

HSP 1 Score: 106 bits (264), Expect = 6.010e-26
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   25 SMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNG 273
            SM LSSL RL H RH++TVK+    L IP GL+ AL+T+ +ARDLHE+LHEEL+  NFINP RPGD M  I+Y+   E H NG
Sbjct:  122 SMALSSLGRLNHDRHYNTVKYSGDELMIPGGLVYALSTAATARDLHEILHEELVNCNFINPLRPGDVMGCISYISAAETHVNG 204          
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: W7TH19_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH19_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.750e-23
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 1
Query:    1 ARPISRTQSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGE 276
            ARP+S  QSM+LSSL RLTH RHF+T K     + IP GL++ L  S SARDLHEVLHEE++   FIN   P D ++S +Y++ ++++  G+
Sbjct:   56 ARPLSPAQSMQLSSLGRLTHERHFNTRKFKRDEMYIPGGLVLGLTLSASARDLHEVLHEEVIECAFINHLHPWDIVSSFSYIKEMDENITGD 147          
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A7S2F3A4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F3A4_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.470e-21
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    1 ARPISRTQSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGE 276
            ARP+S TQ M+LSS+A+LTH RHF+        + +P GL++ L  S SARDLHEVLHEEL+   FIN   PGD + +++ V+ VE++  GE
Sbjct:  269 ARPLSTTQIMQLSSIAKLTHERHFNHHVFDIANIYVPGGLVLGLVQSASARDLHEVLHEELVDCKFINNLHPGDTVGALSMVKSVEENVTGE 360          
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A7S2RYC8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYC8_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 8.130e-21
Identity = 44/91 (48.35%), Postives = 65/91 (71.43%), Query Frame = 1
Query:    4 RPISRTQSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGE 276
            RP+S TQ M+LSSLARLTH RHF+   +    + IP GL++ L  S SARDLHEVLHE+++  ++IN   PGD + +I++V+ +E++  G+
Sbjct:  255 RPLSATQCMQLSSLARLTHERHFNHHVYNIDEIYIPGGLVLGLTASASARDLHEVLHEDVLQCSYINNLHPGDTVGAISFVKAMEENITGD 345          
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A7S2UZD2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZD2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.810e-20
Identity = 41/91 (45.05%), Postives = 66/91 (72.53%), Query Frame = 1
Query:    4 RPISRTQSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGE 276
            RP+++TQ+M+L+SL RLTH RHF+     +  + +P G I+ L  S ++RDLHE+LHEE+  A  +NP RPGD M +I+Y++ V+++ +G+
Sbjct:  248 RPLTQTQTMQLASLMRLTHERHFNRNIFKQDEILVPGGCIMGLMMSATSRDLHEILHEEVQSAALMNPLRPGDMMGAISYIKSVDENLSGD 338          
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A812SDL1_SYMMI (Mch protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SDL1_SYMMI)

HSP 1 Score: 90.5 bits (223), Expect = 2.380e-19
Identity = 40/91 (43.96%), Postives = 65/91 (71.43%), Query Frame = 1
Query:    4 RPISRTQSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGE 276
            RP+S T  M+L++LARL H RHF+T K     + +P GL+ +LATSL++RDLHEV+ EEL+   F N   PG+ ++++T+++ + +H +G+
Sbjct:  247 RPLSPTLVMQLATLARLNHERHFNTRKFSADEILVPGGLVYSLATSLASRDLHEVIFEELVNCAFPNNLAPGETVSAMTFIRHLSEHVSGD 337          
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A7S2UCF5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCF5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.060e-19
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 1
Query:    4 RPISRTQSMELSSLARLTHSRHFDTVKHG-EGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGE 276
            R I+  QSM+L+SLARLTH RHFD  K+  +  +  P GL+V L TS S+RDLHE+LHEEL+   F+N   P + + +++YVQ V+    G+
Sbjct:  270 RSITLAQSMQLASLARLTHERHFDLRKYSVDTEILCPGGLVVGLTTSASSRDLHEILHEELLNVTFVNALHPNNVVGAMSYVQSVDDTIPGD 361          
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Match: A0A4D9D1N7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1N7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.330e-18
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   22 QSMELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHEELMYANFINPFRPGDAMTSITYVQRVEQHPNGE 276
            +SM+LSSL RLTH RHF+T K     + IP GL++ L  S SARDLHEVLHEE++   FIN   P D ++S +Y++ ++++  G+
Sbjct:  338 ESMQLSSLGRLTHERHFNTRKFKRDEMYIPGGLVLGLTLSASARDLHEVLHEEVIECAFINHLHPWDIVSSFSYIKEMDENITGD 422          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14282.3128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FKH2_ECTSI1.160e-5398.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU73_9PHAE1.200e-5397.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YXT0_9STRA6.010e-2659.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TH19_9STRA9.750e-2350.00Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2F3A4_9STRA6.470e-2150.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2RYC8_9STRA8.130e-2148.35Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2UZD2_9STRA2.810e-2045.05Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A812SDL1_SYMMI2.380e-1943.96Mch protein n=1 Tax=Symbiodinium microadriaticum T... [more]
A0A7S2UCF5_9STRA8.060e-1947.83Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A4D9D1N7_9STRA1.330e-1848.24Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14282contigE-fasciculatus_F_contig14282:2549..3341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue1.4e-38
Seed eggNOG ortholog2880.D7FKH2
EggNOG free text desc.malyl-CoA lyase activity
EggNOG OGs2QWRT@2759,COG2301@1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHotDog domain
Ec32 orthologEc-12_002090.1
Exons2
Model size294
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14282.3128.1prot_E-fasciculatus_F_contig14282.3128.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14282 2549..3314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927919.5438712-CDS-E-fasciculatus_F_contig14282:2548..26771622927919.5438712-CDS-E-fasciculatus_F_contig14282:2548..2677Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14282 2549..2677 -
1695995750.8703797-CDS-E-fasciculatus_F_contig14282:2548..26771695995750.8703797-CDS-E-fasciculatus_F_contig14282:2548..2677Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14282 2549..2677 -
1622927919.6277685-CDS-E-fasciculatus_F_contig14282:3176..33141622927919.6277685-CDS-E-fasciculatus_F_contig14282:3176..3314Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14282 3177..3314 -
1695995750.881089-CDS-E-fasciculatus_F_contig14282:3176..33141695995750.881089-CDS-E-fasciculatus_F_contig14282:3176..3314Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14282 3177..3314 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927919.8003812-UTR-E-fasciculatus_F_contig14282:3314..33411622927919.8003812-UTR-E-fasciculatus_F_contig14282:3314..3341Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14282 3315..3341 -
1695995750.8898134-UTR-E-fasciculatus_F_contig14282:3314..33411695995750.8898134-UTR-E-fasciculatus_F_contig14282:3314..3341Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14282 3315..3341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14282.3128.1

>prot_E-fasciculatus_F_contig14282.3128.1 ID=prot_E-fasciculatus_F_contig14282.3128.1|Name=mRNA_E-fasciculatus_F_contig14282.3128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=89bp
MELSSLARLTHSRHFDTVKHGEGGLAIPAGLIVALATSLSARDLHEVLHE
ELMYANFINPFRPGDAMTSITYVQRVEQHPNGESAFNA*
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mRNA from alignment at E-fasciculatus_F_contig14282:2549..3341-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14282.3128.1 ID=mRNA_E-fasciculatus_F_contig14282.3128.1|Name=mRNA_E-fasciculatus_F_contig14282.3128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=793bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14282:2549..3341- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCACGCCCAATCTCAAGGACCCAGTCCATGGAGCTGTCCAGCCTGGCCCG TCTGACCCACTCACGACACTTTGACACGGTCAAGCACGGCGAGGGCGGGC TCGCCATCCCTGCAGGGTTGATCGTTGCTCTTGCCACGTCCCTCTCCGCG AGAGATCTCCACGAGGTGTGGAAGACAAACGTAGCATGCTAGTCGGGGTC TCTCAGCACTGCGCCCTTGGTGTATGCCAGGGTTGAGTGGGGAAATTTTG CGGGTTGGGTGTAGCGCGTGTTTTTGTGGTCAGACCGAGTAGGTGTTGGA GGTGTCATGCCAAAGCGGTTTCACCGGATCTTTGTTTTGTGTCGGGCCCG CTGTATGGGAGGACGCGCTCGAAAACAACTCCTATTTTATGTCGGCGCGT TCAAGCGTATACCCGTTTAGTCGAGAGTCGAAAGGAAGATGGATAAGAAA CGAGGTGATGGTATCGGTGTCCGATGTCGTGGGGAACAACCAAATCACGG CAGTCCTAGCTGGAAAGTCGAAGTATAGGTTGTCTCTAAGGTAAGTCGTC TCGCGATCTATCGTGGCCCTCTTTCACTCACTTTCTCTCTCTCTCTCTCT CTCGTTCACTCACGCTCTCTCGCACTCGTTCCCTCCTCCCTCCCCTTCAA TTCCTCTCGTCCAGGTTCTCCACGAGGAGCTCATGTACGCCAACTTCATC AACCCGTTCCGTCCCGGCGACGCCATGACCTCCATCACTTACGTGCAGCG GGTGGAACAGCACCCCAACGGTGAGAGCGCATTCAACGCGTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14282:2549..3341-

>mRNA_E-fasciculatus_F_contig14282.3128.1 ID=mRNA_E-fasciculatus_F_contig14282.3128.1|Name=mRNA_E-fasciculatus_F_contig14282.3128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14282:2549..3341- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGCTGTCCAGCCTGGCCCGTCTGACCCACTCACGACACTTTGACAC
GGTCAAGCACGGCGAGGGCGGGCTCGCCATCCCTGCAGGGTTGATCGTTG
CTCTTGCCACGTCCCTCTCCGCGAGAGATCTCCACGAGATGGAGCTGTCC
AGCCTGGCCCGTCTGACCCACTCACGACACTTTGACACGGTCAAGCACGG
CGAGGGCGGGCTCGCCATCCCTGCAGGGTTGATCGTTGCTCTTGCCACGT
CCCTCTCCGCGAGAGATCTCCACGAGGTTCTCCACGAGGAGCTCATGTAC
GCCAACTTCATCAACCCGTTCCGTCCCGGCGACGCCATGACCTCCATCAC
TTACGTGCAGCGGGTGGAACAGCACCCCAACGGTGAGAGCGCATTCAACG
CGTAAGTTCTCCACGAGGAGCTCATGTACGCCAACTTCATCAACCCGTTC
CGTCCCGGCGACGCCATGACCTCCATCACTTACGTGCAGCGGGTGGAACA
GCACCCCAACGGTGAGAGCGCATTCAACGCGTAA
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