mRNA_E-fasciculatus_F_contig14281.3127.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14281.3127.1
Unique NamemRNA_E-fasciculatus_F_contig14281.3127.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14281.3127.1 vs. uniprot
Match: A0A6H5L599_9PHAE (4Fe-4S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L599_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 5.300e-65
Identity = 117/141 (82.98%), Postives = 122/141 (86.52%), Query Frame = 1 
Query:    1 MPVRRRPGSSAGDRALPCVGVGFSLALMLGALLRPRGAQSFVVVPGAVVGGVIDSTAAAAVVPAAAVRSRGGVERWQRRPSVGRMGVGVVLRASMDDDDEFDPDAWTDELRENEGKTQGGDDMGMGVSNTVKKKRRADPKY 423
            MPVRRRPGS A +  LPC+GVG SLA+ +GAL RPRGAQSFVVVPGA VGGVID TAA    P   VRSRGGVER QRRPSVG MG+ VVLRASMDDDDEFDPDAWTDELRENEGKTQGGDDMGMGVSNTVKKKRRADPKY
Sbjct:    1 MPVRRRPGSFAEESGLPCLGVGMSLAI-IGALCRPRGAQSFVVVPGAAVGGVIDGTAAITAAPT--VRSRGGVERCQRRPSVGGMGLEVVLRASMDDDDEFDPDAWTDELRENEGKTQGGDDMGMGVSNTVKKKRRADPKY 138
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14281.3127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L599_9PHAE5.300e-6582.984Fe-4S ferredoxin-type domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14281contigE-fasciculatus_F_contig14281:1014..3251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score222.6
Seed ortholog evalue1.1e-55
Seed eggNOG ortholog2880.D7G6I4
KEGG koko:K01265,ko:K05337,ko:K08244
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ATP-dependent protein binding
EggNOG OGsCOG0484@1,KOG0716@2759
EC2.7.9.4,3.4.11.18
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categorysignal peptide
Exons2
Model size427
Cds size426
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927919.4370618-CDS-E-fasciculatus_F_contig14281:1013..11301622927919.4370618-CDS-E-fasciculatus_F_contig14281:1013..1130Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14281 1014..1130 -
1695995750.8499331-CDS-E-fasciculatus_F_contig14281:1013..11301695995750.8499331-CDS-E-fasciculatus_F_contig14281:1013..1130Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14281 1014..1130 -
1622927919.458844-CDS-E-fasciculatus_F_contig14281:2942..32511622927919.458844-CDS-E-fasciculatus_F_contig14281:2942..3251Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14281 2943..3251 -
1695995750.8608735-CDS-E-fasciculatus_F_contig14281:2942..32511695995750.8608735-CDS-E-fasciculatus_F_contig14281:2942..3251Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14281 2943..3251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14281.3127.1prot_E-fasciculatus_F_contig14281.3127.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14281 1014..3251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14281.3127.1

>prot_E-fasciculatus_F_contig14281.3127.1 ID=prot_E-fasciculatus_F_contig14281.3127.1|Name=mRNA_E-fasciculatus_F_contig14281.3127.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=142bp
MPVRRRPGSSAGDRALPCVGVGFSLALMLGALLRPRGAQSFVVVPGAVVG
GVIDSTAAAAVVPAAAVRSRGGVERWQRRPSVGRMGVGVVLRASMDDDDE
FDPDAWTDELRENEGKTQGGDDMGMGVSNTVKKKRRADPKYA
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mRNA from alignment at E-fasciculatus_F_contig14281:1014..3251-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14281.3127.1 ID=mRNA_E-fasciculatus_F_contig14281.3127.1|Name=mRNA_E-fasciculatus_F_contig14281.3127.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2238bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14281:1014..3251- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTGTCAGGAGGCGTCCTGGGTCCTCTGCTGGGGATAGAGCGCTACC
ATGCGTGGGGGTCGGTTTTTCTCTTGCACTGATGCTCGGGGCATTACTCA
GGCCCCGGGGAGCGCAGAGCTTTGTCGTTGTTCCAGGAGCAGTAGTAGGC
GGGGTCATTGACAGCACGGCAGCAGCTGCGGTAGTGCCAGCAGCAGCGGT
GAGATCGCGGGGCGGTGTCGAGCGCTGGCAGCGGAGACCATCGGTGGGCA
GAATGGGGGTGGGGGTGGTGTTGAGGGCATCGATGGACGATGATGACGAG
TTTGACCCGGTGAGAGGGAACACTTGCATTTCAGTATCCGTTTGAATTTT
AAAGTCAACATCATCTGCTATCATGTCGAGATTTGGAATTGTAGCACACG
TCAGCAAATCCCGTTCAAGGAAAAGACCAAGCAGGGGTTTATCGCGTAGC
TTCTGTGGCGAGCGCGAAAAGAAGCATCTTGTGCACAGAAAACGCCTGCA
ACCGGTCCAAATGTAGACTACGGCAATACGAGCTGTGCAGGGCCTGGTCC
CTTCTCTCACATGCTATTATTAGTACTGTCCGTGGCGTCATGTGTGTTTT
GCTCAACGATACGGACAATAATACCACCACCCCTTTTCTTCCAGTCCGTA
CCATACGGCAACCCAGCTGATGTCTAAAGCACCCTTCTTTGAATCTAATA
ATGTTACCGTCGCCGTATGCTGAGTCTTCCTCCCCGTGGCGAAGTCATAA
GTAGCATAGGATTTCGTGCGAACATGCATTTGTGGCCCGCCTCCCACCAG
CCGACAAATACCGCCGGACATCCTAGTGCTGTAGTCTCTCACGAGCCATT
GCAGCAGGCAACATGTATTTTATGTGTACCCTCGTTTTTGAGCGTTGCAG
TATCTGTAGAACTAGGTGCGCTTACTGCTGTAGATGGCTGCGACTCCCAC
TTCTGCCGACAAATATCGACGGGAATCCTGCGGATGTTCCTCGCCCAGGA
AGTCAGTTTTAGTATCGTACCGCAGGCAGCAGCGGGTGTACCGTCTTTGG
GAGCGTTGCAGCATCTTCAGCCAGAAACCAGGTGCACTGCTGTAGACGGC
TGTGCTCGGCTCGTGTTGGCGTAAACTGCTCATGGTCTATGTTTCCGATA
TTGTTCGTCTGTTGGTCTGTGGAACGAGGACGCTGCTGCACGTCTGCTTT
CGTCGACCCCGTCGGCTTACATGAGACCTGCCGTCAGCTGACCCCCCAAC
CCGACACTCCGAACGCCATATGCCCTACATGTACTCCAACTAATTCGACG
GGACGACAAGCAGTAAAAGAAAACAACTCCATCCCGAGGACTAGCCAACA
CTGTAAACAGCGGGATAAGGACGTAAATCTACAAACTGTCGTGGCTCCGG
AGGGCACCTTATGAAGGGGGGTCGAAATCAATTGTCACGGACTGGAATCG
CTGTAGTTGAAATTGGGCATCCTCTTTTTCCCGTGGAAGACGGGCTCCGA
TGTAAGAGGGTCGAGGGCCTCTGTCACACCACTATCGTAGCCACGGCCAC
TGTAGCTTGATCTTGATTTGACTTGTCGGCACTCCACGAAAGGATAACAT
TCTCCGTGGTTCGGTGACATTCCCCGGTGGGATTTTTGTTTGAATGGCGA
CCGCACCGCATGAACAAGACCCTGACAGCGCTTGGCACAGAGTTCGGTTT
GATGCTCGACGCTATGCATAGGGGGAGGAGCGGCGGAGTCCTTGTCGCAA
TAGCCAGTCAGCCAAGAGCCGCAGCAAGACAAGAGCCGCATAGGGGGATG
AAAAAAGCAAGATGAGAAAGAACGCTCTCTGCGGAGTTAAGGCTTCTTCC
TGTGTGATCCCAAGCTTGGACTTATTATAACAGGAATACATCTTTTTCGG
CATTTTTCTCTCCTTTCATGCGTTTCAAAGCGCACCTACATATCATTTGC
AAAGCCCGCGTCCCGAGGATGTATATCAAAACATCTGGCCCCTTTTCTGT
TCGCGTTTGGTATTATGAAGCACACCTCTGCGGTGGCCTTCCTCCGGTGA
AATACCGAGCTTCGAGTTGATCAAACAACCTCGGCCCCTCCGTGATTTGA
TTTTTTTTGTGTTTTTCACAGGATGCCTGGACGGATGAGCTGCGAGAGAA
CGAAGGCAAGACTCAGGGCGGCGATGACATGGGGATGGGCGTGTCGAACA
CCGTCAAGAAGAAGCGGCGCGCGGACCCGAAATACGCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14281:1014..3251-

>mRNA_E-fasciculatus_F_contig14281.3127.1 ID=mRNA_E-fasciculatus_F_contig14281.3127.1|Name=mRNA_E-fasciculatus_F_contig14281.3127.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=852bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14281:1014..3251- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTGTCAGGAGGCGTCCTGGGTCCTCTGCTGGGGATAGAGCGCTACC
ATGCGTGGGGGTCGGTTTTTCTCTTGCACTGATGCTCGGGGCATTACTCA
GGCCCCGGGGAGCGCAGAGCTTTGTCGTTGTTCCAGGAGCAGTAGTAGGC
GGGGTCATTGACAGCACGGCAGCAGCTGCGGTAGTGCCAGCAGCAGCGGT
GAGATCGCGGGGCGGTGTCGAGCGCTGGCAGCGGAGACCATCGGTGGGCA
GAATGGGGGTGGGGGTGGTGTTGAGGGCATCGATGGACGATGATGACGAG
TTTGACCCGATGCCTGTCAGGAGGCGTCCTGGGTCCTCTGCTGGGGATAG
AGCGCTACCATGCGTGGGGGTCGGTTTTTCTCTTGCACTGATGCTCGGGG
CATTACTCAGGCCCCGGGGAGCGCAGAGCTTTGTCGTTGTTCCAGGAGCA
GTAGTAGGCGGGGTCATTGACAGCACGGCAGCAGCTGCGGTAGTGCCAGC
AGCAGCGGTGAGATCGCGGGGCGGTGTCGAGCGCTGGCAGCGGAGACCAT
CGGTGGGCAGAATGGGGGTGGGGGTGGTGTTGAGGGCATCGATGGACGAT
GATGACGAGTTTGACCCGGATGCCTGGACGGATGAGCTGCGAGAGAACGA
AGGCAAGACTCAGGGCGGCGATGACATGGGGATGGGCGTGTCGAACACCG
TCAAGAAGAAGCGGCGCGCGGACCCGAAATACGCAGATGCCTGGACGGAT
GAGCTGCGAGAGAACGAAGGCAAGACTCAGGGCGGCGATGACATGGGGAT
GGGCGTGTCGAACACCGTCAAGAAGAAGCGGCGCGCGGACCCGAAATACG
CA
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