mRNA_E-fasciculatus_F_contig14271.3119.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14271.3119.1
Unique NamemRNA_E-fasciculatus_F_contig14271.3119.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14271.3119.1 vs. uniprot
Match: D7G834_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G834_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.770e-25
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 VITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRSAL 135
            VITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRSAL
Sbjct:   43 VITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRSAL 87
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BLAST of mRNA_E-fasciculatus_F_contig14271.3119.1 vs. uniprot
Match: A0A6H5LAT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.590e-23
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 VITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRSAL 135
            VITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRSAL
Sbjct:  258 VITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRSAL 302
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BLAST of mRNA_E-fasciculatus_F_contig14271.3119.1 vs. uniprot
Match: A0A835Z2B1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2B1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.280e-12
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 VITTDRRLVSD-GPWEFALLGEREGRNSETGGKSIAYIWEVVRSAL 135
            V+TTDRRL S+ G WEFAL   REG N+ETGG S+AYIWEV ++ +
Sbjct:  135 VVTTDRRLASEPGAWEFALRATREGVNAETGGASVAYIWEVTQNGV 180
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BLAST of mRNA_E-fasciculatus_F_contig14271.3119.1 vs. uniprot
Match: L1JW98_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JW98_GUITC)

HSP 1 Score: 62.4 bits (150), Expect = 1.170e-11
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 VITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRSAL 135
            VIT D+ LVSDGPWEF LL   +G+N E GG S  YIW+VV+SA+
Sbjct:   39 VITVDKMLVSDGPWEFQLLHSIDGKNEEVGG-STGYIWKVVKSAV 82
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BLAST of mRNA_E-fasciculatus_F_contig14271.3119.1 vs. uniprot
Match: A0A7S2V145_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V145_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.200e-11
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 VITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRSAL 135
            +ITTD++LVSDGPW+F LL   EG N ETGG S  YIW+V++S +
Sbjct:  343 IITTDKKLVSDGPWKFQLLETVEGPNEETGGMSTGYIWKVLQSGV 387
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BLAST of mRNA_E-fasciculatus_F_contig14271.3119.1 vs. uniprot
Match: A0A7S1HJW0_HEMAN (Histone-lysine N-methyltransferase, H3 lysine-79 specific (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HJW0_HEMAN)

HSP 1 Score: 57.4 bits (137), Expect = 1.980e-8
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 VITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRS 129
            VIT D+ LVSDGPWEF  +G  EGRNSE G  S+ Y++ VV+S
Sbjct:  259 VITVDKMLVSDGPWEFEEMGMLEGRNSELGS-SVGYLYRVVKS 300
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14271.3119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G834_ECTSI1.770e-25100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LAT6_9PHAE2.590e-23100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z2B1_9STRA6.280e-1263.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L1JW98_GUITC1.170e-1162.22Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S2V145_9STRA2.200e-1160.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1HJW0_HEMAN1.980e-860.47Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14271contigE-fasciculatus_F_contig14271:2866..3003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog2880.D7G834
EggNOG OGs2D163@1,2SGUP@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927918.5647488-CDS-E-fasciculatus_F_contig14271:2865..30031622927918.5647488-CDS-E-fasciculatus_F_contig14271:2865..3003Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14271 2866..3003 -
1695995750.4317818-CDS-E-fasciculatus_F_contig14271:2865..30031695995750.4317818-CDS-E-fasciculatus_F_contig14271:2865..3003Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14271 2866..3003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14271.3119.1prot_E-fasciculatus_F_contig14271.3119.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14271 2866..3003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14271.3119.1

>prot_E-fasciculatus_F_contig14271.3119.1 ID=prot_E-fasciculatus_F_contig14271.3119.1|Name=mRNA_E-fasciculatus_F_contig14271.3119.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=46bp
VITTDRRLVSDGPWEFALLGEREGRNSETGGKSIAYIWEVVRSAL*
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mRNA from alignment at E-fasciculatus_F_contig14271:2866..3003-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14271.3119.1 ID=mRNA_E-fasciculatus_F_contig14271.3119.1|Name=mRNA_E-fasciculatus_F_contig14271.3119.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=138bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14271:2866..3003- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCATCACAACCGACCGTCGCCTGGTATCCGATGGTCCGTGGGAGTTTGC
TCTCCTAGGAGAGCGCGAGGGCAGAAATTCCGAGACCGGGGGCAAGTCCA
TCGCGTACATCTGGGAGGTTGTACGATCAGCGCTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14271:2866..3003-

>mRNA_E-fasciculatus_F_contig14271.3119.1 ID=mRNA_E-fasciculatus_F_contig14271.3119.1|Name=mRNA_E-fasciculatus_F_contig14271.3119.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=276bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14271:2866..3003- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCATCACAACCGACCGTCGCCTGGTATCCGATGGTCCGTGGGAGTTTGC
TCTCCTAGGAGAGCGCGAGGGCAGAAATTCCGAGACCGGGGGCAAGTCCA
TCGCGTACATCTGGGAGGTTGTACGATCAGCGCTGTGAGTCATCACAACC
GACCGTCGCCTGGTATCCGATGGTCCGTGGGAGTTTGCTCTCCTAGGAGA
GCGCGAGGGCAGAAATTCCGAGACCGGGGGCAAGTCCATCGCGTACATCT
GGGAGGTTGTACGATCAGCGCTGTGA
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