|
|
Homology
BLAST of mRNA_E-fasciculatus_F_contig14271.3118.1 vs. uniprot
Match: D7G833_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G833_ECTSI) HSP 1 Score: 479 bits (1234), Expect = 1.780e-165 Identity = 260/329 (79.03%), Postives = 271/329 (82.37%), Query Frame = 1
Query: 1 QAQVQAGEDPPPDNTDLILINAHEESLSADDWVDLLLSLMQALSDGGVAVVRGPHEQVDVTADEERNEKAGPTNGAWYGSGYLWDAVTALTCDGVAAA--VGNLDGGIIVLRHAAPGEIDLE---ARCGSSHPGQQGGAVAKAAVAEAPPHPLPFESLFLWTTAQSDTTTATAIEAVQAKFGGANAVRNYARRRYDRSACINTL---ATGEAAAWSKPSLGMDSRGGGHLRTERRHARHKSVPQDDAASQWHSAARTCLEAHLEEHPQDVRAGFALEMVLRATNGGNGVDRQVARLRTRMTEESGPAGGFLWRALHARAAGAAATGLLL 963
QAQV AGEDP PDN DLILI+ H+E LSADDWVDL SLM+ALSD GV V+RGP EQVD T RNE AG T AWYGSG+LWDAVTAL CD VAAA VGNLDGGIIVLRHAAPGEIDLE ARCG +HPGQQGG VAK AVA APPHPL FE LFLW+TA SD TTATAIEAVQA FGGAN VR YARRRYDRS C+NTL ATGEA AWS+ SL +S GGGHLR E RH RHKSVPQ AA QWHSAAR CLE HLEEHPQDVRAGFALEMVLRAT GG+GVDRQV RLRTRMTEESGPAGG LWRALHARAAG AATGLLL
Sbjct: 192 QAQVTAGEDPLPDNADLILIDVHKEVLSADDWVDLFRSLMRALSDDGVIVIRGPREQVDATTGAGRNEGAGSTIRAWYGSGHLWDAVTALACDQVAAAAAVGNLDGGIIVLRHAAPGEIDLETVKARCGRNHPGQQGGGVAKGAVAAAPPHPLRFERLFLWSTAPSDITTATAIEAVQAMFGGANEVRKYARRRYDRSVCLNTLNTVATGEAVAWSEASLETESMGGGHLRAEPRHIRHKSVPQSGAAPQWHSAARACLETHLEEHPQDVRAGFALEMVLRAT-GGSGVDRQVDRLRTRMTEESGPAGGLLWRALHARAAGVAATGLLL 519
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | S-adenosyl-L-methionine-dependent methyltransferase |
| Ec32 ortholog | Ec-00_010600.1 |
| Exons | 3 |
| Model size | 966 |
| Cds size | 966 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14271.3118.1 >prot_E-fasciculatus_F_contig14271.3118.1 ID=prot_E-fasciculatus_F_contig14271.3118.1|Name=mRNA_E-fasciculatus_F_contig14271.3118.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=322bp
QAQVQAGEDPPPDNTDLILINAHEESLSADDWVDLLLSLMQALSDGGVAV
VRGPHEQVDVTADEERNEKAGPTNGAWYGSGYLWDAVTALTCDGVAAAVG
NLDGGIIVLRHAAPGEIDLEARCGSSHPGQQGGAVAKAAVAEAPPHPLPF
ESLFLWTTAQSDTTTATAIEAVQAKFGGANAVRNYARRRYDRSACINTLA
TGEAAAWSKPSLGMDSRGGGHLRTERRHARHKSVPQDDAASQWHSAARTC
LEAHLEEHPQDVRAGFALEMVLRATNGGNGVDRQVARLRTRMTEESGPAG
GFLWRALHARAAGAAATGLLL* back to topmRNA from alignment at E-fasciculatus_F_contig14271:334..2025+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig14271.3118.1 ID=mRNA_E-fasciculatus_F_contig14271.3118.1|Name=mRNA_E-fasciculatus_F_contig14271.3118.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1692bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14271:334..2025+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCGCAAGTACAGGCCGGCGAGGACCCGCCGCCGGACAACACCGACCT
GATCCTCATCAATGCACACGAAGAATCGCTGTCTGCAGACGACTGGGTGG
ACCTTTTACTCTCCTTGATGCAGGTGCGAACGTGTGCCTTGTTCTGACAT
CGTCGAGTCGAGAACGCTTGGTGATTTCGTGCGATCGAGAAGAGTAACGA
ACGGTATCGCGTATATGGAGAGTGAACCAGTGGTCGCTCGCAACACGCCC
GATATTCGAATGAGATAATTACTTGCACGTGGTCGAGGACGCGAAGTTCT
AATGTTGTCCAGGGGCCACTGTCACGACAAACGAGACCAAATCAGTCAAG
GGGTGGGAACGTCTCCGCCGTGCTATGACCGTTGCCTATCCCGCAACCCC
GAAGGACTCTTTGGGTCCCATAGAAGCGGGCGTTGTCCATGTTGCCTCCC
ATGCGACCTAAGCTGCTGATGAAAACTATTTTATGCGCCCTCATTGCCGA
CATCGCATCCATCCGGCCCCTGCCAGGCGTTGTCAGATGGCGGGGTGGCT
GTAGTCCGAGGCCCGCATGAGCAAGTAGACGTGACAGCAGATGAGGAGAG
GAACGAGAAAGCGGGCCCGACAAATGGCGCTTGGTACGGAAGCGGATACT
TGTGGGACGCGGTGACAGCTCTAACATGCGACGGCGTTGCGGCTGCTGTG
GGCAATTTAGACGGGTAAGTGTGGTCTCGTGCATCTTCGATGTGATGAGG
TGGATACAACATTTTTCAAGAGGAAACGAAGCTGAGGCTACGCGTGATTT
TTATACTGCTGGGTGCAGCCGTCCCTGTTCGTGCTCCGGCGTGAGGGCCA
AGCTTCGTTCTAGAAACAAAATCTTTCGACTGTCTCTCGGACTCGAACTA
CTGCCTTATCGCATCACCATTCCGTGTTAAAATTCCTCGAGCTCTGTGAC
AACTCGGTCGTGCGCTTAGAACAACCTCTCTCAGACGTCCGTTATCCTAC
CACCGTACATGTCCTCGACGCACGCCTGTCCATGCAGGGGCATCATCGTG
CTACGACACGCTGCTCCTGGCGAAATAGATTTAGAGGCGAGATGTGGCAG
TAGCCACCCAGGGCAACAAGGGGGAGCGGTAGCCAAGGCGGCGGTGGCGG
AAGCCCCGCCCCACCCATTGCCATTCGAAAGCCTTTTCCTATGGACGACC
GCACAGAGTGACACAACCACGGCTACGGCGATTGAGGCTGTTCAGGCCAA
GTTCGGCGGGGCGAACGCGGTGCGGAATTACGCCCGGCGAAGGTACGACC
GATCGGCGTGCATCAACACCCTCGCCACCGGCGAAGCTGCGGCTTGGAGC
AAACCATCGTTAGGAATGGACAGCAGGGGCGGTGGGCACCTCCGCACCGA
ACGGCGGCACGCCCGCCATAAGAGCGTGCCACAAGACGACGCCGCATCCC
AGTGGCACTCCGCTGCACGAACGTGCCTGGAGGCGCACTTGGAGGAGCAC
CCGCAGGATGTGCGAGCCGGGTTCGCGCTCGAAATGGTGCTTAGGGCGAC
GAACGGGGGCAACGGGGTCGACAGGCAGGTTGCCCGCCTTCGAACGAGAA
TGACTGAAGAGAGTGGGCCGGCGGGAGGCTTCCTTTGGCGAGCGCTGCAC
GCGCGCGCGGCCGGTGCGGCGGCAACGGGGCTGCTCCTTTAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig14271:334..2025+ >mRNA_E-fasciculatus_F_contig14271.3118.1 ID=mRNA_E-fasciculatus_F_contig14271.3118.1|Name=mRNA_E-fasciculatus_F_contig14271.3118.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1932bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14271:334..2025+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGCGCAAGTACAGGCCGGCGAGGACCCGCCGCCGGACAACACCGACCT
GATCCTCATCAATGCACACGAAGAATCGCTGTCTGCAGACGACTGGGTGG
ACCTTTTACTCTCCTTGATGCAGCAGGCGCAAGTACAGGCCGGCGAGGAC
CCGCCGCCGGACAACACCGACCTGATCCTCATCAATGCACACGAAGAATC
GCTGTCTGCAGACGACTGGGTGGACCTTTTACTCTCCTTGATGCAGGCGT
TGTCAGATGGCGGGGTGGCTGTAGTCCGAGGCCCGCATGAGCAAGTAGAC
GTGACAGCAGATGAGGAGAGGAACGAGAAAGCGGGCCCGACAAATGGCGC
TTGGTACGGAAGCGGATACTTGTGGGACGCGGTGACAGCTCTAACATGCG
ACGGCGTTGCGGCTGCTGTGGGCAATTTAGACGGGCGTTGTCAGATGGCG
GGGTGGCTGTAGTCCGAGGCCCGCATGAGCAAGTAGACGTGACAGCAGAT
GAGGAGAGGAACGAGAAAGCGGGCCCGACAAATGGCGCTTGGTACGGAAG
CGGATACTTGTGGGACGCGGTGACAGCTCTAACATGCGACGGCGTTGCGG
CTGCTGTGGGCAATTTAGACGGGGGCATCATCGTGCTACGACACGCTGCT
CCTGGCGAAATAGATTTAGAGGCGAGATGTGGCAGTAGCCACCCAGGGCA
ACAAGGGGGAGCGGTAGCCAAGGCGGCGGTGGCGGAAGCCCCGCCCCACC
CATTGCCATTCGAAAGCCTTTTCCTATGGACGACCGCACAGAGTGACACA
ACCACGGCTACGGCGATTGAGGCTGTTCAGGCCAAGTTCGGCGGGGCGAA
CGCGGTGCGGAATTACGCCCGGCGAAGGTACGACCGATCGGCGTGCATCA
ACACCCTCGCCACCGGCGAAGCTGCGGCTTGGAGCAAACCATCGTTAGGA
ATGGACAGCAGGGGCGGTGGGCACCTCCGCACCGAACGGCGGCACGCCCG
CCATAAGAGCGTGCCACAAGACGACGCCGCATCCCAGTGGCACTCCGCTG
CACGAACGTGCCTGGAGGCGCACTTGGAGGAGCACCCGCAGGATGTGCGA
GCCGGGTTCGCGCTCGAAATGGTGCTTAGGGCGACGAACGGGGGCAACGG
GGTCGACAGGCAGGTTGCCCGCCTTCGAACGAGAATGACTGAAGAGAGTG
GGCCGGCGGGAGGCTTCCTTTGGCGAGCGCTGCACGCGCGCGCGGCCGGT
GCGGCGGCAACGGGGCTGCTCCTTTAGGGGCATCATCGTGCTACGACACG
CTGCTCCTGGCGAAATAGATTTAGAGGCGAGATGTGGCAGTAGCCACCCA
GGGCAACAAGGGGGAGCGGTAGCCAAGGCGGCGGTGGCGGAAGCCCCGCC
CCACCCATTGCCATTCGAAAGCCTTTTCCTATGGACGACCGCACAGAGTG
ACACAACCACGGCTACGGCGATTGAGGCTGTTCAGGCCAAGTTCGGCGGG
GCGAACGCGGTGCGGAATTACGCCCGGCGAAGGTACGACCGATCGGCGTG
CATCAACACCCTCGCCACCGGCGAAGCTGCGGCTTGGAGCAAACCATCGT
TAGGAATGGACAGCAGGGGCGGTGGGCACCTCCGCACCGAACGGCGGCAC
GCCCGCCATAAGAGCGTGCCACAAGACGACGCCGCATCCCAGTGGCACTC
CGCTGCACGAACGTGCCTGGAGGCGCACTTGGAGGAGCACCCGCAGGATG
TGCGAGCCGGGTTCGCGCTCGAAATGGTGCTTAGGGCGACGAACGGGGGC
AACGGGGTCGACAGGCAGGTTGCCCGCCTTCGAACGAGAATGACTGAAGA
GAGTGGGCCGGCGGGAGGCTTCCTTTGGCGAGCGCTGCACGCGCGCGCGG
CCGGTGCGGCGGCAACGGGGCTGCTCCTTTAG back to top
|