mRNA_E-fasciculatus_F_contig14257.3115.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14257.3115.1
Unique NamemRNA_E-fasciculatus_F_contig14257.3115.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14257.3115.1 vs. uniprot
Match: A0A6H5JFN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFN8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.200e-12
Identity = 97/166 (58.43%), Postives = 102/166 (61.45%), Query Frame = 1 
Query:  223 GVFGGGSTGSGSRAFPWGPSLGAGRCTGGGVCAPGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRR--REEPSTGSREPREDGLRRSARNVK---VRKSPRIAAMEE--VASRTTSGMGQAAAGGRKRSAAAVATADSSGKEAKRARRGGGVVS 699
            G FGGG++GSGSRA P   SLGAG    GGVC PG G                XXXXXXXXXXXXXXXXXXXXXX     REE ST SREPREDGLRRSARNVK   VR+S RI   +E   ASRTTSGMGQ                   GK+AKRARRGGGV S
Sbjct:  202 GGFGGGASGSGSRACPGAQSLGAGGSAVGGVCHPGAGGAGSVAGVMGAGVVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXREELSTESREPREDGLRRSARNVKDVQVRRSSRIKERDEKAAASRTTSGMGQXXXXXXXXXXXXXXXXXXXGKQAKRARRGGGVES 367
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BLAST of mRNA_E-fasciculatus_F_contig14257.3115.1 vs. uniprot
Match: D8LKR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR7_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.620e-11
Identity = 55/86 (63.95%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:  457 REEPSTGSREPREDGLRRSARNVK---VRKSPRIAAMEEVAS--RTTSGMGQAAAGGRKRSAAAVATADSSGKEAKRARRGGGVVS 699
            REE ST SREPREDGLRRSARNVK   VR+S RI   +E A+  RTTSGMGQA           VA  +SSGKE KRARRGGGV S
Sbjct:  165 REELSTESREPREDGLRRSARNVKDVQVRRSSRIKERDEKAAALRTTSGMGQAXXXXXXXXXXXVAAPESSGKETKRARRGGGVES 250
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14257.3115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JFN8_9PHAE2.200e-1258.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKR7_ECTSI4.620e-1163.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14257contigE-fasciculatus_F_contig14257:866..2342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_004520.1
Exons3
Model size1056
Cds size1056
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14257.3115.1prot_E-fasciculatus_F_contig14257.3115.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14257 866..2342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927918.02007-CDS-E-fasciculatus_F_contig14257:865..12841622927918.02007-CDS-E-fasciculatus_F_contig14257:865..1284Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14257 866..1284 +
1695995750.203223-CDS-E-fasciculatus_F_contig14257:865..12841695995750.203223-CDS-E-fasciculatus_F_contig14257:865..1284Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14257 866..1284 +
1622927918.0458033-CDS-E-fasciculatus_F_contig14257:1476..19661622927918.0458033-CDS-E-fasciculatus_F_contig14257:1476..1966Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14257 1477..1966 +
1695995750.214645-CDS-E-fasciculatus_F_contig14257:1476..19661695995750.214645-CDS-E-fasciculatus_F_contig14257:1476..1966Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14257 1477..1966 +
1622927918.066143-CDS-E-fasciculatus_F_contig14257:2195..23421622927918.066143-CDS-E-fasciculatus_F_contig14257:2195..2342Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14257 2196..2342 +
1695995750.2361448-CDS-E-fasciculatus_F_contig14257:2195..23421695995750.2361448-CDS-E-fasciculatus_F_contig14257:2195..2342Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14257 2196..2342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14257.3115.1

>prot_E-fasciculatus_F_contig14257.3115.1 ID=prot_E-fasciculatus_F_contig14257.3115.1|Name=mRNA_E-fasciculatus_F_contig14257.3115.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=352bp
PSTRGVGASSSNRQGSSPAWGYRSNPPGSLGGGFGLGASTAPAPGATAGA
AGAAASSSSPFSGGSFSFGGGFSFGVFGGGSTGSGSRAFPWGPSLGAGRC
TGGGVCAPGGGAGSGAGVLGAGGGGGGGGGGQGQGQQGGGGSGSGGGRTK
RRREEPSTGSREPREDGLRRSARNVKVRKSPRIAAMEEVASRTTSGMGQA
AAGGRKRSAAAVATADSSGKEAKRARRGGGVVSGGRKRSAAAVAAADSSG
PSAKRARRGGGVGRGAASGGGAGAPAAVAAAGGKVKAEAKRAGGEDEVAG
TEQGGGAGGSGRSRTGGGGKAGGGASGAGGGASGTGGDNGAQGSTTASAP
R*
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mRNA from alignment at E-fasciculatus_F_contig14257:866..2342+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14257.3115.1 ID=mRNA_E-fasciculatus_F_contig14257.3115.1|Name=mRNA_E-fasciculatus_F_contig14257.3115.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1477bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14257:866..2342+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGTCCACTCGGGGTGTGGGAGCGTCAAGCTCGAACCGCCAAGGCTCATC
ACCGGCGTGGGGGTACAGATCGAATCCACCAGGCTCACTGGGCGGTGGTT
TCGGGCTCGGCGCATCGACGGCGCCGGCGCCGGGGGCGACGGCAGGGGCG
GCAGGAGCGGCAGCGTCGAGCTCAAGCCCGTTCTCCGGGGGCAGCTTCAG
CTTCGGCGGCGGCTTCAGCTTCGGCGTCTTCGGAGGTGGTTCCACCGGCA
GCGGTTCACGAGCGTTCCCTTGGGGACCGTCGCTCGGCGCTGGGAGATGC
ACGGGTGGAGGGGTGTGCGCCCCAGGAGGAGGTGCGGGTAGCGGTGCCGG
CGTACTAGGTGCCGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGCAAGGGC
AGGGTCAGCAGGGAGGCGGGTTCTTCGGCGACTTCGGTAGCAGTGCCAGC
AGGAGTGGTTCACGAGCGTGCCCGGGGGCACCGTCGCTCGCCGCTGGGGA
ATCCGCAGGCGGAGGGGTGTACGCCGCGGGAGGAGGAGGGGGTGCGGGTA
GCGGTGCCGGCGTAGTGGAGGCCGGAGGAGGAGGAGACAGGGAGGCTCAG
GAAGTAGGCAGAGGATCAGGGTCAGGCGGGGGCAGGACCAAGCGGCGCCG
GGAGGAGCCCTCCACGGGGTCCCGCGAGCCGCGCGAGGACGGCCTTCGGC
GCAGCGCCCGCAACGTCAAGGTGCGAAAGAGCCCGCGCATCGCGGCGATG
GAGGAAGTTGCTTCGAGGACGACGAGCGGCATGGGGCAGGCGGCGGCCGG
AGGGAGGAAGCGGTCGGCGGCGGCGGTAGCGACGGCAGACTCGTCCGGCA
AGGAGGCCAAGAGGGCCCGCCGCGGCGGAGGGGTGGTGAGCGGTGGGAGG
AAGCGGTCGGCGGCGGCGGTAGCGGCGGCAGACTCGTCCGGCCCGTCGGC
AAAGAGGGCCCGCCGCGGCGGAGGAGTGGGGAGGGGCGCGGCTTCGGGAG
GAGGGGCGGGAGCGCCCGCGGCGGTGGCGGCAGCGGGGGGCAAGGTGAAG
GCGGAAGCGAAGCGCGCCGGAGGCGAGGACGAGGTGGCGGGAACGGAGCA
GGTATTGTAGGCGACGCCACGAGGGTAGAAGTGATAGCTCGACGGACGGA
GCAAACGCGGCCTCTCTGTTCCAATCTAACTCGCTACAGTTCGTAGTACG
ACCAGGAGAAACTTGTTGCATTTTTCACTAGCGTTTGCAGAACGATGGTC
TCGAGGACTGAAGAGCTTTCCCCCTCAACCGTACTCCGTTCGTGGCTTTG
TTTGTTCCGCCGGACTGCTTTGAACCCCAGGGGGGGGGGGCGGGGGGGTC
GGGGCGCTCGCGCACCGGGGGTGGCGGGAAGGCGGGAGGGGGCGCGTCGG
GCGCGGGCGGGGGCGCCTCGGGCACGGGCGGCGACAACGGGGCCCAGGGC
AGCACTACCGCCTCCGCCCCTAGGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14257:866..2342+

>mRNA_E-fasciculatus_F_contig14257.3115.1 ID=mRNA_E-fasciculatus_F_contig14257.3115.1|Name=mRNA_E-fasciculatus_F_contig14257.3115.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2112bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14257:866..2342+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGTCCACTCGGGGTGTGGGAGCGTCAAGCTCGAACCGCCAAGGCTCATC
ACCGGCGTGGGGGTACAGATCGAATCCACCAGGCTCACTGGGCGGTGGTT
TCGGGCTCGGCGCATCGACGGCGCCGGCGCCGGGGGCGACGGCAGGGGCG
GCAGGAGCGGCAGCGTCGAGCTCAAGCCCGTTCTCCGGGGGCAGCTTCAG
CTTCGGCGGCGGCTTCAGCTTCGGCGTCTTCGGAGGTGGTTCCACCGGCA
GCGGTTCACGAGCGTTCCCTTGGGGACCGTCGCTCGGCGCTGGGAGATGC
ACGGGTGGAGGGGTGTGCGCCCCAGGAGGAGGTGCGGGTAGCGGTGCCGG
CGTACTAGGTGCCGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGCAAGGGC
AGGGTCAGCAGGGAGGCGGCCGTCCACTCGGGGTGTGGGAGCGTCAAGCT
CGAACCGCCAAGGCTCATCACCGGCGTGGGGGTACAGATCGAATCCACCA
GGCTCACTGGGCGGTGGTTTCGGGCTCGGCGCATCGACGGCGCCGGCGCC
GGGGGCGACGGCAGGGGCGGCAGGAGCGGCAGCGTCGAGCTCAAGCCCGT
TCTCCGGGGGCAGCTTCAGCTTCGGCGGCGGCTTCAGCTTCGGCGTCTTC
GGAGGTGGTTCCACCGGCAGCGGTTCACGAGCGTTCCCTTGGGGACCGTC
GCTCGGCGCTGGGAGATGCACGGGTGGAGGGGTGTGCGCCCCAGGAGGAG
GTGCGGGTAGCGGTGCCGGCGTACTAGGTGCCGGAGGAGGAGGAGGAGGA
GGAGGAGGGGGGCAAGGGCAGGGTCAGCAGGGAGGCGGAGGATCAGGGTC
AGGCGGGGGCAGGACCAAGCGGCGCCGGGAGGAGCCCTCCACGGGGTCCC
GCGAGCCGCGCGAGGACGGCCTTCGGCGCAGCGCCCGCAACGTCAAGGTG
CGAAAGAGCCCGCGCATCGCGGCGATGGAGGAAGTTGCTTCGAGGACGAC
GAGCGGCATGGGGCAGGCGGCGGCCGGAGGGAGGAAGCGGTCGGCGGCGG
CGGTAGCGACGGCAGACTCGTCCGGCAAGGAGGCCAAGAGGGCCCGCCGC
GGCGGAGGGGTGGTGAGCGGTGGGAGGAAGCGGTCGGCGGCGGCGGTAGC
GGCGGCAGACTCGTCCGGCCCGTCGGCAAAGAGGGCCCGCCGCGGCGGAG
GAGTGGGGAGGGGCGCGGCTTCGGGAGGAGGGGCGGGAGCGCCCGCGGCG
GTGGCGGCAGCGGGGGGCAAGGTGAAGGCGGAAGCGAAGCGCGCCGGAGG
CGAGGACGAGGTGGCGGGAACGGAGCAGAGGATCAGGGTCAGGCGGGGGC
AGGACCAAGCGGCGCCGGGAGGAGCCCTCCACGGGGTCCCGCGAGCCGCG
CGAGGACGGCCTTCGGCGCAGCGCCCGCAACGTCAAGGTGCGAAAGAGCC
CGCGCATCGCGGCGATGGAGGAAGTTGCTTCGAGGACGACGAGCGGCATG
GGGCAGGCGGCGGCCGGAGGGAGGAAGCGGTCGGCGGCGGCGGTAGCGAC
GGCAGACTCGTCCGGCAAGGAGGCCAAGAGGGCCCGCCGCGGCGGAGGGG
TGGTGAGCGGTGGGAGGAAGCGGTCGGCGGCGGCGGTAGCGGCGGCAGAC
TCGTCCGGCCCGTCGGCAAAGAGGGCCCGCCGCGGCGGAGGAGTGGGGAG
GGGCGCGGCTTCGGGAGGAGGGGCGGGAGCGCCCGCGGCGGTGGCGGCAG
CGGGGGGCAAGGTGAAGGCGGAAGCGAAGCGCGCCGGAGGCGAGGACGAG
GTGGCGGGAACGGAGCAGGGGGGGGGGGCGGGGGGGTCGGGGCGCTCGCG
CACCGGGGGTGGCGGGAAGGCGGGAGGGGGCGCGTCGGGCGCGGGCGGGG
GCGCCTCGGGCACGGGCGGCGACAACGGGGCCCAGGGCAGCACTACCGCC
TCCGCCCCTAGGTAGGGGGGGGGGGCGGGGGGGTCGGGGCGCTCGCGCAC
CGGGGGTGGCGGGAAGGCGGGAGGGGGCGCGTCGGGCGCGGGCGGGGGCG
CCTCGGGCACGGGCGGCGACAACGGGGCCCAGGGCAGCACTACCGCCTCC
GCCCCTAGGTAG
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