mRNA_E-fasciculatus_F_contig14254.3114.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14254.3114.1
Unique NamemRNA_E-fasciculatus_F_contig14254.3114.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14254.3114.1 vs. uniprot
Match: D8LJW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW9_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.510e-20
Identity = 53/88 (60.23%), Postives = 60/88 (68.18%), Query Frame = 2 
Query:    8 TYADNTAVLVPTACPCTTAKCTSTTDRATXXXXXXARAKEKRKWQ*RMTGRAVLPTECTPPLTYADNTAVLVPTACPCTTAKCTSTTD 271
            TYA+ TAVLVPT CPCTTAKCT TTD A XX       ++KR+      GR  LP E  PP TYA+N A LVPT CPCTTAKCT +T+
Sbjct:    8 TYANITAVLVPTGCPCTTAKCTPTTDPAXXXPAAERPTEKKRRLC--KPGRVALPAESIPPSTYAENKAALVPTGCPCTTAKCTQSTE 93
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BLAST of mRNA_E-fasciculatus_F_contig14254.3114.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-6
Identity = 44/79 (55.70%), Postives = 48/79 (60.76%), Query Frame = 1 
Query:   49 PMHDRQMHLHHGPGNHXXXXXXKSEG--EEEMAMTHDGPRGPPHGMHPPPHLRGQHGGPRPHGMPMHDRQMHLHHGPGH 279
            P H+    LH GPG+ XXXXXX      +EEMAM H  PRGPPHGM               HGMPMHDR+MHLHHGPGH
Sbjct:  264 PFHESGRPLH-GPGHXXXXXXXXXXDVEQEEMAM-HTRPRGPPHGMPXXXXXXXXXXXXXXHGMPMHDREMHLHHGPGH 340
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14254.3114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJW9_ECTSI1.510e-2060.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVV7_9PHAE1.120e-655.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14254contigE-fasciculatus_F_contig14254:3028..3376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Exons1
Model size351
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927917.9772832-CDS-E-fasciculatus_F_contig14254:3028..33761622927917.9772832-CDS-E-fasciculatus_F_contig14254:3028..3376Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14254 3029..3376 -
1695995750.192938-CDS-E-fasciculatus_F_contig14254:3028..33761695995750.192938-CDS-E-fasciculatus_F_contig14254:3028..3376Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14254 3029..3376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14254.3114.1prot_E-fasciculatus_F_contig14254.3114.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14254 3029..3376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14254.3114.1

>prot_E-fasciculatus_F_contig14254.3114.1 ID=prot_E-fasciculatus_F_contig14254.3114.1|Name=mRNA_E-fasciculatus_F_contig14254.3114.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=116bp
PPHLRGQHGGPRPHGMPMHDRQMHLHHGPGNHHHHGGGKSEGEEEMAMTH
DGPRGPPHGMHPPPHLRGQHGGPRPHGMPMHDRQMHLHHGPGHHHHHGGG
KSEGEHGXXXXHLDGD
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mRNA from alignment at E-fasciculatus_F_contig14254:3028..3376-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14254.3114.1 ID=mRNA_E-fasciculatus_F_contig14254.3114.1|Name=mRNA_E-fasciculatus_F_contig14254.3114.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=349bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14254:3028..3376- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCCTCACCTACGCGGACAACACGGCGGTCCTCGTCCCCACGGCATGCC
CATGCACGACCGCCAAATGCACCTCCACCACGGACCGGGCAACCACCACC
ACCACGGCGGCGGCAAGAGCGAAGGAGAAGAGGAAATGGCAATGACGCAT
GACGGGCCGCGCGGTCCTCCCCACGGAATGCACCCCCCCCCTCACCTACG
CGGACAACACGGCGGTCCTCGTCCCCACGGCATGCCCATGCACGACCGCC
AAATGCACCTCCACCACGGACCGGGCCACCACCACCACCACGGCGGCGGC
AAGAGCGAAGGAGAGCATGGCNNNNNNNNNNACCACCTCGACGGCGACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14254:3028..3376-

>mRNA_E-fasciculatus_F_contig14254.3114.1 ID=mRNA_E-fasciculatus_F_contig14254.3114.1|Name=mRNA_E-fasciculatus_F_contig14254.3114.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=696bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14254:3028..3376- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCCTCACCTACGCGGACAACACGGCGGTCCTCGTCCCCACGGCATGCC
CATGCACGACCGCCAAATGCACCTCCACCACGGACCGGGCAACCACCACC
ACCACGGCGGCGGCAAGAGCGAAGGAGAAGAGGAAATGGCAATGACGCAT
GACGGGCCGCGCGGTCCTCCCCACGGAATGCACCCCCCCCCTCACCTACG
CGGACAACACGGCGGTCCTCGTCCCCACGGCATGCCCATGCACGACCGCC
AAATGCACCTCCACCACGGACCGGGCCACCACCACCACCACGGCGGCGGC
AAGAGCGAAGGAGAGCATGGCNNNNNNNNNNACCACCTCGACGGCGACCC
CCCTCACCTACGCGGACAACACGGCGGTCCTCGTCCCCACGGCATGCCCA
TGCACGACCGCCAAATGCACCTCCACCACGGACCGGGCAACCACCACCAC
CACGGCGGCGGCAAGAGCGAAGGAGAAGAGGAAATGGCAATGACGCATGA
CGGGCCGCGCGGTCCTCCCCACGGAATGCACCCCCCCCCTCACCTACGCG
GACAACACGGCGGTCCTCGTCCCCACGGCATGCCCATGCACGACCGCCAA
ATGCACCTCCACCACGGACCGGGCCACCACCACCACCACGGCGGCGGCAA
GAGCGAAGGAGAGCATGGCNNNNNNNNNNACCACCTCGACGGCGAC
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