mRNA_E-fasciculatus_F_contig14251.3112.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14251.3112.1
Unique NamemRNA_E-fasciculatus_F_contig14251.3112.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14251.3112.1 vs. uniprot
Match: A0A6H5KW49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW49_9PHAE)

HSP 1 Score: 349 bits (895), Expect = 3.220e-120
Identity = 173/192 (90.10%), Postives = 181/192 (94.27%), Query Frame = 1 
Query:    1 MNRDQYLLRRRQRPQSSGTAVAAAAA-PIDSDEQENLIAEIVQEVEHQATFFTRVFSGWLLACGVVLVLCSLKLILAGRNGEPWPHRAVLENVPDAAFHVTYLGQLLGLYLAHRVAGGSGWHILPGVMLSWTSLFSWLAVFRHFGVTNPLFYWLPLGPAVVLAAAVYLFTSQKKLESEVEELKGSRYNLKGA 573
            MNRDQYL R+R+RP+SSGTAV AAA   IDSDEQE LIAEI +EVEHQ TFFTRVFSGWLLACGVVLVLCSLKL+LAGRNGEPWPHRAVLENVPDAAFHVTYLGQLLGLYLAHRVA GSGWHILPGVMLSWTSLFSWLAVFRHFGVTNPLFYWLPLGPAV LAAAVYLFTSQK+LE EV+EL+GSRYNLKGA
Sbjct:    1 MNRDQYLARQRRRPESSGTAVPAAAPITIDSDEQEKLIAEITREVEHQTTFFTRVFSGWLLACGVVLVLCSLKLLLAGRNGEPWPHRAVLENVPDAAFHVTYLGQLLGLYLAHRVARGSGWHILPGVMLSWTSLFSWLAVFRHFGVTNPLFYWLPLGPAVALAAAVYLFTSQKRLEREVKELEGSRYNLKGA 192
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BLAST of mRNA_E-fasciculatus_F_contig14251.3112.1 vs. uniprot
Match: D8LI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI82_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 1.760e-77
Identity = 113/118 (95.76%), Postives = 115/118 (97.46%), Query Frame = 1 
Query:  220 ILAGRNGEPWPHRAVLENVPDAAFHVTYLGQLLGLYLAHRVAGGSGWHILPGVMLSWTSLFSWLAVFRHFGVTNPLFYWLPLGPAVVLAAAVYLFTSQKKLESEVEELKGSRYNLKGA 573
            +LAGRNGEPWPHRAVLENVPDAAFHVTYLGQLLGLYLAHRVAGGSGWHILPGVMLSWTSLFSWLAVFRHF VTNPLFYWLPLGPAV LAAAVYLFTSQKKLE EVEEL+GSRYNLKGA
Sbjct:    1 MLAGRNGEPWPHRAVLENVPDAAFHVTYLGQLLGLYLAHRVAGGSGWHILPGVMLSWTSLFSWLAVFRHFEVTNPLFYWLPLGPAVALAAAVYLFTSQKKLEREVEELEGSRYNLKGA 118
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14251.3112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW49_9PHAE3.220e-12090.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI82_ECTSI1.760e-7795.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14251contigE-fasciculatus_F_contig14251:144..1836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003540.1
Exons3
Model size726
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14251.3112.1prot_E-fasciculatus_F_contig14251.3112.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14251 294..1836 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927917.8143568-UTR-E-fasciculatus_F_contig14251:143..2931622927917.8143568-UTR-E-fasciculatus_F_contig14251:143..293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14251 144..293 -
1695995750.1473575-UTR-E-fasciculatus_F_contig14251:143..2931695995750.1473575-UTR-E-fasciculatus_F_contig14251:143..293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14251 144..293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927917.838243-CDS-E-fasciculatus_F_contig14251:293..5211622927917.838243-CDS-E-fasciculatus_F_contig14251:293..521Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14251 294..521 -
1695995750.1568975-CDS-E-fasciculatus_F_contig14251:293..5211695995750.1568975-CDS-E-fasciculatus_F_contig14251:293..521Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14251 294..521 -
1622927917.857572-CDS-E-fasciculatus_F_contig14251:987..11791622927917.857572-CDS-E-fasciculatus_F_contig14251:987..1179Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14251 988..1179 -
1695995750.1655445-CDS-E-fasciculatus_F_contig14251:987..11791695995750.1655445-CDS-E-fasciculatus_F_contig14251:987..1179Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14251 988..1179 -
1622927917.871518-CDS-E-fasciculatus_F_contig14251:1680..18361622927917.871518-CDS-E-fasciculatus_F_contig14251:1680..1836Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14251 1681..1836 -
1695995750.1743295-CDS-E-fasciculatus_F_contig14251:1680..18361695995750.1743295-CDS-E-fasciculatus_F_contig14251:1680..1836Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14251 1681..1836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14251.3112.1

>prot_E-fasciculatus_F_contig14251.3112.1 ID=prot_E-fasciculatus_F_contig14251.3112.1|Name=mRNA_E-fasciculatus_F_contig14251.3112.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=192bp
MNRDQYLLRRRQRPQSSGTAVAAAAAPIDSDEQENLIAEIVQEVEHQATF
FTRVFSGWLLACGVVLVLCSLKLILAGRNGEPWPHRAVLENVPDAAFHVT
YLGQLLGLYLAHRVAGGSGWHILPGVMLSWTSLFSWLAVFRHFGVTNPLF
YWLPLGPAVVLAAAVYLFTSQKKLESEVEELKGSRYNLKGA*
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mRNA from alignment at E-fasciculatus_F_contig14251:144..1836-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14251.3112.1 ID=mRNA_E-fasciculatus_F_contig14251.3112.1|Name=mRNA_E-fasciculatus_F_contig14251.3112.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1693bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14251:144..1836- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAATCGCGATCAATATCTTCTGAGGCGGCGGCAGAGACCCCAGTCCTC
CGGAACCGCTGTGGCTGCCGCTGCTGCCCCTATCGATAGCGACGAGCAAG
AGAATTTGATAGCGGAAATCGTTCAAGAGGTCGAGCACCAGGCGACCTTC
TTCACGGTGAGTTCTGTGCGGATAATGTCGGACTATATCGAGAGTGATGC
AGTAAGCGATGCTGCGGTTTCTTGCCCTTGCTGAGCGTCCGAGTTCGGGG
GTATAGACAGCTGTCGGTATCCAACAGAACCGTTTGCCTGATGCACTCTC
GTCATGCCGTTGCCGCCGCGCCATTCACTACTCTGTTCTCTATCCACGTT
CTTCTGTACACTAATGCTCGAACTATGCACGTTAGGCTCCACACTGGACA
GTGATGAAACACGAAAGAGAGAACACTAGGCGGAGATCTGTACCCAAATG
GCCACAGCTGTGAGAGGTTGCGGTGCAGGCCTGCTGCTGTATGTACGTAG
AGTGCCGCTGTGACCGTCACCACACTACATCCTCACCGTCTTCCTCCTGT
TCACACCATCAAAACAAAACACACTCTGCCGTCCCGGCCTCCTACGGTAC
AATCATTTGCTCATTCCTTTTGGGTATCGCCTGCATGCAACCGCTCCGCT
CCAACAGCGCGTTTTCTCTGGATGGCTGCTAGCGTGCGGTGTAGTGCTCG
TACTCTGCTCGCTCAAGCTGATACTAGCTGGGAGAAACGGGGAGCCTTGG
CCTCACCGGGCTGTCCTTGAGAACGTTCCGGATGCGGCGTTCCATGTCAC
GTACCTCGGACAGCTGCTGGGCTTGTACCTGGCTCACAGGGTGGCTGGGG
TGAGTCAAAACAAGCATGCTTCCTAGAAGTAGAGGAGGTACACCAACGCT
GCTGTCGGTGGCACAAGAAGATTGAGCAGCAGCGAGCAGCGACTGTTTGA
TTCAGGATGACGCACGGTCGAGCAGCTACGGGACTGCTTGGGTGTTTCGC
TAAGGAGTACGGTCTTGAACAAGCTGAAGAATATGTCACTTTTACACTTT
TACCACATACAATTGGTAGGGTTCACACACACTCCGCGGTGAACTCTGTA
GCTCTTTGGGATTGACATACTTGTAGCCAAACAAATGAGCCCCCGTCCTA
CACATCTAGATATATGCTCTACGTGGGACACACATGTCTTTCTATCGAAT
TTCAAATGTCGTCCCGATCAGTGCCTTGTAATCGCAACGCTCAAGCCCAC
AACTCGGATATTGGACTGTTTCGTGCGTTTAATTCCTTCGCGTGTGTTCA
TCCGCACTGCATCAGGGGAGCGGATGGCATATTTTACCGGGAGTCATGTT
GTCATGGACGAGCCTTTTCTCGTGGCTTGCGGTGTTCCGACACTTCGGAG
TGACCAACCCGCTATTCTATTGGCTGCCGCTCGGTCCGGCGGTTGTGCTT
GCGGCCGCCGTCTACCTCTTCACCTCTCAGAAGAAGTTGGAAAGCGAGGT
GGAGGAGTTGAAAGGGTCGCGGTACAACCTCAAAGGAGCTTGAAGCTGTG
ACGGGTTCTTCTGCTGCTACTGCCACAAGCCGCGTCTGGGGAGGGCGGAG
GGAGGGCAGCAGTAGCAATGCGAAACTACGGAGGACCACAGGGGCCGTCC
CGCCTACAAGGCCGACGATCTGAAGGTATTCTGGAGGACGGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14251:144..1836-

>mRNA_E-fasciculatus_F_contig14251.3112.1 ID=mRNA_E-fasciculatus_F_contig14251.3112.1|Name=mRNA_E-fasciculatus_F_contig14251.3112.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1152bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14251:144..1836- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAATCGCGATCAATATCTTCTGAGGCGGCGGCAGAGACCCCAGTCCTC
CGGAACCGCTGTGGCTGCCGCTGCTGCCCCTATCGATAGCGACGAGCAAG
AGAATTTGATAGCGGAAATCGTTCAAGAGGTCGAGCACCAGGCGACCTTC
TTCACGATGAATCGCGATCAATATCTTCTGAGGCGGCGGCAGAGACCCCA
GTCCTCCGGAACCGCTGTGGCTGCCGCTGCTGCCCCTATCGATAGCGACG
AGCAAGAGAATTTGATAGCGGAAATCGTTCAAGAGGTCGAGCACCAGGCG
ACCTTCTTCACGCGCGTTTTCTCTGGATGGCTGCTAGCGTGCGGTGTAGT
GCTCGTACTCTGCTCGCTCAAGCTGATACTAGCTGGGAGAAACGGGGAGC
CTTGGCCTCACCGGGCTGTCCTTGAGAACGTTCCGGATGCGGCGTTCCAT
GTCACGTACCTCGGACAGCTGCTGGGCTTGTACCTGGCTCACAGGGTGGC
TGGGCGCGTTTTCTCTGGATGGCTGCTAGCGTGCGGTGTAGTGCTCGTAC
TCTGCTCGCTCAAGCTGATACTAGCTGGGAGAAACGGGGAGCCTTGGCCT
CACCGGGCTGTCCTTGAGAACGTTCCGGATGCGGCGTTCCATGTCACGTA
CCTCGGACAGCTGCTGGGCTTGTACCTGGCTCACAGGGTGGCTGGGGGGA
GCGGATGGCATATTTTACCGGGAGTCATGTTGTCATGGACGAGCCTTTTC
TCGTGGCTTGCGGTGTTCCGACACTTCGGAGTGACCAACCCGCTATTCTA
TTGGCTGCCGCTCGGTCCGGCGGTTGTGCTTGCGGCCGCCGTCTACCTCT
TCACCTCTCAGAAGAAGTTGGAAAGCGAGGTGGAGGAGTTGAAAGGGTCG
CGGTACAACCTCAAAGGAGCTTGAGGGAGCGGATGGCATATTTTACCGGG
AGTCATGTTGTCATGGACGAGCCTTTTCTCGTGGCTTGCGGTGTTCCGAC
ACTTCGGAGTGACCAACCCGCTATTCTATTGGCTGCCGCTCGGTCCGGCG
GTTGTGCTTGCGGCCGCCGTCTACCTCTTCACCTCTCAGAAGAAGTTGGA
AAGCGAGGTGGAGGAGTTGAAAGGGTCGCGGTACAACCTCAAAGGAGCTT
GA
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