mRNA_E-fasciculatus_F_contig14247.3108.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14247.3108.1
Unique NamemRNA_E-fasciculatus_F_contig14247.3108.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14247.3108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14247contigE-fasciculatus_F_contig14247:1002..1509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size508
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14247.3108.1prot_E-fasciculatus_F_contig14247.3108.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14247 1040..1366 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927917.1059964-UTR-E-fasciculatus_F_contig14247:1001..10391622927917.1059964-UTR-E-fasciculatus_F_contig14247:1001..1039Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14247 1002..1039 +
1695995749.8560836-UTR-E-fasciculatus_F_contig14247:1001..10391695995749.8560836-UTR-E-fasciculatus_F_contig14247:1001..1039Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14247 1002..1039 +
1622927917.130383-UTR-E-fasciculatus_F_contig14247:1366..15091622927917.130383-UTR-E-fasciculatus_F_contig14247:1366..1509Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14247 1367..1509 +
1695995749.875456-UTR-E-fasciculatus_F_contig14247:1366..15091695995749.875456-UTR-E-fasciculatus_F_contig14247:1366..1509Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14247 1367..1509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927917.1181686-CDS-E-fasciculatus_F_contig14247:1039..13661622927917.1181686-CDS-E-fasciculatus_F_contig14247:1039..1366Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14247 1040..1366 +
1695995749.8657374-CDS-E-fasciculatus_F_contig14247:1039..13661695995749.8657374-CDS-E-fasciculatus_F_contig14247:1039..1366Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14247 1040..1366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14247.3108.1

>prot_E-fasciculatus_F_contig14247.3108.1 ID=prot_E-fasciculatus_F_contig14247.3108.1|Name=mRNA_E-fasciculatus_F_contig14247.3108.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=109bp
MDWIELDWNNSGIRRNTTMTRQQEGDMYPHPDLYSWMRLCCSVYPLVRNT
AHNKRTFGKNKIPARCMIHLRKKCSTPVPCERNVRHPSVVYWVIPLLFPS
VFSFFSRQ*
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mRNA from alignment at E-fasciculatus_F_contig14247:1002..1509+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14247.3108.1 ID=mRNA_E-fasciculatus_F_contig14247.3108.1|Name=mRNA_E-fasciculatus_F_contig14247.3108.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=508bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14247:1002..1509+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACTCCTCTGCGCGGCCGTTTGATCGATCGATCGGCCGAATGGATTGGATT
GAATTGGATTGGAACAATAGCGGCATACGACGAAATACGACGATGACTCG
TCAACAAGAAGGAGACATGTACCCGCACCCTGATCTATATTCTTGGATGA
GGCTGTGTTGCAGTGTCTACCCACTCGTAAGAAACACAGCTCATAACAAA
CGGACTTTTGGAAAAAACAAGATACCGGCCAGGTGCATGATACACTTGCG
AAAGAAATGTTCGACACCCGTCCCTTGCGAAAGAAATGTTCGACACCCGT
CCGTTGTTTATTGGGTCATCCCACTATTGTTTCCTTCAGTGTTTTCGTTT
TTCTCGCGACAGTAACCACAACAAGCGAGCGGGAGGCAGGCAAACGGACG
GAACGGGCTGAAAAAAAGTACAAAAAAAACAAAAGCAACAAGAGAGAGAG
AGAGAAAAAAAGGTGGTGTCCAACCAGGGGTCGACACATGCTGCTGCTGC
TGCTTCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14247:1002..1509+

>mRNA_E-fasciculatus_F_contig14247.3108.1 ID=mRNA_E-fasciculatus_F_contig14247.3108.1|Name=mRNA_E-fasciculatus_F_contig14247.3108.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=654bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14247:1002..1509+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGATTGGATTGAATTGGATTGGAACAATAGCGGCATACGACGAAATAC
GACGATGACTCGTCAACAAGAAGGAGACATGTACCCGCACCCTGATCTAT
ATTCTTGGATGAGGCTGTGTTGCAGTGTCTACCCACTCGTAAGAAACACA
GCTCATAACAAACGGACTTTTGGAAAAAACAAGATACCGGCCAGGTGCAT
GATACACTTGCGAAAGAAATGTTCGACACCCGTCCCTTGCGAAAGAAATG
TTCGACACCCGTCCGTTGTTTATTGGGTCATCCCACTATTGTTTCCTTCA
GTGTTTTCGTTTTTCTCGCGACAGTAAATGGATTGGATTGAATTGGATTG
GAACAATAGCGGCATACGACGAAATACGACGATGACTCGTCAACAAGAAG
GAGACATGTACCCGCACCCTGATCTATATTCTTGGATGAGGCTGTGTTGC
AGTGTCTACCCACTCGTAAGAAACACAGCTCATAACAAACGGACTTTTGG
AAAAAACAAGATACCGGCCAGGTGCATGATACACTTGCGAAAGAAATGTT
CGACACCCGTCCCTTGCGAAAGAAATGTTCGACACCCGTCCGTTGTTTAT
TGGGTCATCCCACTATTGTTTCCTTCAGTGTTTTCGTTTTTCTCGCGACA
GTAA
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