mRNA_E-fasciculatus_F_contig14235.3099.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14235.3099.1 vs. uniprot
Match: A0A6H5JBW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW8_9PHAE) HSP 1 Score: 143 bits (360), Expect = 7.930e-42 Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 1
Query: 76 MKLVASCGIGYYFSKKGILDQSAITSLSKLIFFVFQPCLLFVNVASTLGTPGQKLSKLLVLPVFAVLQIVFGSAV 300
MKLVASCGIGYYFSKKGILDQSAITSLSKLIFFVFQPCLLFVNVASTLGTPGQKLSKLLVLPVFAVLQI+FGSAV
Sbjct: 1 MKLVASCGIGYYFSKKGILDQSAITSLSKLIFFVFQPCLLFVNVASTLGTPGQKLSKLLVLPVFAVLQILFGSAV 75
BLAST of mRNA_E-fasciculatus_F_contig14235.3099.1 vs. uniprot
Match: D8LM61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM61_ECTSI) HSP 1 Score: 101 bits (251), Expect = 5.470e-25 Identity = 66/100 (66.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query: 1 AGVLAVGSVLMSVQPAILVLATKAVMKLVASCGIGYYFSKKGILDQSAITSLSKLIFFVFQPCLLFVNVASTLGTPGQKLSKLLVLPVFAVLQIVFGSAV 300
AGVLAVGSVL+SVQPAILVLATKAVMKLVASCGIGYYFSKKGILDQ KLSKLLVLPVFAVLQI+FGSAV
Sbjct: 33 AGVLAVGSVLVSVQPAILVLATKAVMKLVASCGIGYYFSKKGILDQ--------------------------------KLSKLLVLPVFAVLQILFGSAV 100
BLAST of mRNA_E-fasciculatus_F_contig14235.3099.1 vs. uniprot
Match: W7U1P2_9STRA (Membrane transporter n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1P2_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 3.910e-19 Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 1
Query: 37 VQPAILVLATKAVMKLVASCGIGYYFSKKGILDQSAITSLSKLIFFVFQPCLLFVNVASTLGTPGQKLSKLLVLPVFAVLQIVFG 291
+QP + AV++LVASCG+G + G+LDQ+++++LS+LIF FQP LLF NVA+TL TP S LLVLP FAVLQI+FG
Sbjct: 112 IQPTAFKTSVNAVLRLVASCGLGLGAASHGLLDQASLSTLSRLIFAFFQPALLFTNVATTLATPSSYGSSLLVLPAFAVLQILFG 196
BLAST of mRNA_E-fasciculatus_F_contig14235.3099.1 vs. uniprot
Match: A0A7S2SS74_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SS74_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.350e-15 Identity = 41/77 (53.25%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 70 AVMKLVASCGIGYYFSKKGILDQSAITSLSKLIFFVFQPCLLFVNVASTLGTPGQKLSKLLVLPVFAVLQIVFGSAV 300
AV KL+A +G++ + + +LD +A + LS+LIFF+FQP LL VNVA+TL TPGQ LS L ++P+FA+ QI GS V
Sbjct: 91 AVSKLIAVVSLGFWAADRKVLDANACSVLSRLIFFIFQPALLCVNVATTLSTPGQSLSTLGIIPLFALSQIAVGSLV 167
BLAST of mRNA_E-fasciculatus_F_contig14235.3099.1 vs. uniprot
Match: A0A482USC9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482USC9_9ARCH) HSP 1 Score: 76.3 bits (186), Expect = 4.260e-14 Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 61 ATKAVMKLVASCGIGYYFSKKGILDQSAITSLSKLIFFVFQPCLLFVNVASTLGTPGQKLSK-----LLVLPVFAVLQIVFG 291
A KA+ KL+A+CGIG S ILDQ+A++ LSKLIF VFQPCLLFVNVAST+ G+ S + +LP+ A+LQ + G
Sbjct: 121 AYKAISKLLATCGIGVLASNYKILDQTALSVLSKLIFSVFQPCLLFVNVASTVANLGKNTSAGSPAAIYLLPLAALLQTLLG 202
BLAST of mRNA_E-fasciculatus_F_contig14235.3099.1 vs. uniprot
Match: A0A4D9D5S5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5S5_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 5.710e-11 Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 61 ATKAVMKLVASCGIGYYFSKKGILDQSAITSLSKLIFFVFQPCLLFVNVASTLGTPGQKLSKLLVLPVFAVLQIVFGSAV 300
A+ AV+ LVA C +G S+ +LDQ A+++LS+L++ VFQP LLF NV L TP Q + +LP+ A +QIV + +
Sbjct: 26 ASGAVLNLVACCCLGVTASRYRVLDQQALSALSRLVYNVFQPSLLFTNVLQILATPSQARGTIFLLPLAAAVQIVTAAGI 105
BLAST of mRNA_E-fasciculatus_F_contig14235.3099.1 vs. uniprot
Match: W7TA92_9STRA (Auxin efflux carrier-like protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TA92_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 4.520e-9 Identity = 35/94 (37.23%), Postives = 59/94 (62.77%), Query Frame = 1
Query: 19 GSVLMSVQPAILVLATKAVMKLVASCGIGYYFSKKGILDQSAITSLSKLIFFVFQPCLLFVNVASTLGTPGQKLSKLLVLPVFAVLQIVFGSAV 300
G + ++ P ++ + AV +L+ +CGIG +F+++GIL + AI +LS +++ + P LL VNVA T+ T L LL LP+F +QI+ S +
Sbjct: 101 GGSVANLDPVVVKASLTAVGELLVACGIGAWFTRRGILGREAIANLSSIVYHILLPSLLVVNVAKTVYT--TPLRTLLPLPLFGTMQILLCSCI 192
BLAST of mRNA_E-fasciculatus_F_contig14235.3099.1 vs. uniprot
Match: A0A4D9CQA1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQA1_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 4.680e-9 Identity = 35/94 (37.23%), Postives = 59/94 (62.77%), Query Frame = 1
Query: 19 GSVLMSVQPAILVLATKAVMKLVASCGIGYYFSKKGILDQSAITSLSKLIFFVFQPCLLFVNVASTLGTPGQKLSKLLVLPVFAVLQIVFGSAV 300
G + ++ P ++ + AV +L+ +CGIG +F+++GIL + AI +LS +++ + P LL VNVA T+ T L LL LP+F +QI+ S +
Sbjct: 38 GGSVANLDPVVVKASLTAVGELLVACGIGAWFTRRGILGREAIANLSSIVYHILLPSLLVVNVAKTVYT--TPLRTLLPLPLFGTMQILLCSCI 129
BLAST of mRNA_E-fasciculatus_F_contig14235.3099.1 vs. uniprot
Match: A0A7S3Q171_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q171_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 8.360e-9 Identity = 41/97 (42.27%), Postives = 55/97 (56.70%), Query Frame = 1
Query: 40 QPAILVLATKAVMKLVASCGIGYYFSKKG------ILDQSAITSLSKLIFFVFQPCLLFVNVASTLGTP------GQKLSKLLVLPVFAVLQIVFGS 294
PA+L + A KL++S GIG + G ILD +A+TSLS+L +++FQPC L VASTL G S LL+LP+ A LQI G+
Sbjct: 72 NPAVLTASLSATSKLLSSIGIGALTTPAGPKQFGNILDGAAVTSLSRLTYWLFQPCFLLCGVASTLAKASSATGAGIPTSSLLLLPLAATLQISLGA 168
BLAST of mRNA_E-fasciculatus_F_contig14235.3099.1 vs. uniprot
Match: A0A6H5KMD6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMD6_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 8.500e-9 Identity = 33/88 (37.50%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 37 VQPAILVLATKAVMKLVASCGIGYYFSKKGILDQSAITSLSKLIFFVFQPCLLFVNVASTLGTPGQKLSKLLVLPVFAVLQIVFGSAV 300
+ P ++ +T+AV +L+ C +G +KKGIL + +LSK+++ +F P LL VNVA T Q ++ LL +P FA +Q+ G A+
Sbjct: 135 INPVVVKASTRAVSELLCCCVLGVVAAKKGILTPVNVAALSKIVYGIFLPSLLMVNVAKT--CVSQSVASLLPIPAFAGIQVALGLAI 220 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14235.3099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14235.3099.1 >prot_E-fasciculatus_F_contig14235.3099.1 ID=prot_E-fasciculatus_F_contig14235.3099.1|Name=mRNA_E-fasciculatus_F_contig14235.3099.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=90bp MSVQPAILVLATKAVMKLVASCGIGYYFSKKGILDQSAITSLSKLIFFVFback to top mRNA from alignment at E-fasciculatus_F_contig14235:26..2915- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14235.3099.1 ID=mRNA_E-fasciculatus_F_contig14235.3099.1|Name=mRNA_E-fasciculatus_F_contig14235.3099.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2890bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14235:26..2915- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14235:26..2915- >mRNA_E-fasciculatus_F_contig14235.3099.1 ID=mRNA_E-fasciculatus_F_contig14235.3099.1|Name=mRNA_E-fasciculatus_F_contig14235.3099.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=540bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14235:26..2915- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |