mRNA_E-fasciculatus_F_contig14233.3098.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14233.3098.1
Unique NamemRNA_E-fasciculatus_F_contig14233.3098.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14233.3098.1 vs. uniprot
Match: D8LRA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA0_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.980e-51
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 1 
Query:   10 RIASAGRLLRQLPYVPTRFQQLSYTFFGLQVLFLVLVFAVLALTRLARIIDTDLGGNSVAAEFLLFVLNTRQDHTASVWIALGFALQLLLLFLPSSLKECALLR 321
            RI SAGRLLRQLPYVPTRFQQLSYTFFGLQVLFLVLVFAVLAL RLARI+DTDLGGNSV AEFLLFV+NTRQDHTASVWIAL FALQLLLLFLP+SLKECALLR
Sbjct:  828 RITSAGRLLRQLPYVPTRFQQLSYTFFGLQVLFLVLVFAVLALARLARILDTDLGGNSVGAEFLLFVVNTRQDHTASVWIALAFALQLLLLFLPASLKECALLR 931
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14233.3098.1 vs. uniprot
Match: D8LEN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN2_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.710e-26
Identity = 64/107 (59.81%), Postives = 76/107 (71.03%), Query Frame = 1 
Query:    1 MVWRIASAGRLLRQLPYVPTRFQQLSYTFFGLQVLFLVLVFAVLALTRLARIIDTDLGGNSVAAEFLLFVLNTRQDHTASVWIALGFALQLLLLFLPSSLKECALLR 321
            M+ RI  +G LLR+LPYVP R+QQLSY FF LQ   L +V+   AL RL  I++ DLGGN+VAAEF+LF+  TRQDH  SV     +ALQLLLLFLPSS KE  L R
Sbjct:  698 MLCRIYISGCLLRKLPYVPNRYQQLSYRFFALQAFLLGIVYVTFALWRLIDILNDDLGGNTVAAEFMLFI-KTRQDHLGSVSTLCAYALQLLLLFLPSSFKESKLFR 803
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14233.3098.1 vs. uniprot
Match: A0A6H5KRH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH3_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 4.350e-26
Identity = 63/107 (58.88%), Postives = 76/107 (71.03%), Query Frame = 1 
Query:    1 MVWRIASAGRLLRQLPYVPTRFQQLSYTFFGLQVLFLVLVFAVLALTRLARIIDTDLGGNSVAAEFLLFVLNTRQDHTASVWIALGFALQLLLLFLPSSLKECALLR 321
            M+ RI  +G LLR+LPYVP R+QQLSY FF LQ   L +V+   AL RL  I++ DLGGN+VAAEF+LF+  TRQDH  S+     +ALQLLLLFLPSS KE  L R
Sbjct:  864 MLCRIYISGCLLRKLPYVPNRYQQLSYRFFALQAFLLGIVYVTFALWRLIDILNDDLGGNTVAAEFMLFI-KTRQDHLGSMSTLCAYALQLLLLFLPSSFKESKLFR 969
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14233.3098.1 vs. uniprot
Match: D8LEN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEN4_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.830e-24
Identity = 60/107 (56.07%), Postives = 74/107 (69.16%), Query Frame = 1 
Query:    1 MVWRIASAGRLLRQLPYVPTRFQQLSYTFFGLQVLFLVLVFAVLALTRLARIIDTDLGGNSVAAEFLLFVLNTRQDHTASVWIALGFALQLLLLFLPSSLKECALLR 321
            M+ R+  +G LLR+LPYVP R+QQLSY FFGLQ + L +V+    L RL  I+D D+ GN+ AA+ +LFV  TRQDH  SV I   +ALQL LLFLPSS KE  L R
Sbjct:  388 MLCRMYVSGCLLRKLPYVPNRYQQLSYRFFGLQAILLGIVYTTFTLWRLIDILDDDMDGNTFAAQLMLFV-RTRQDHLGSVSILCAYALQLFLLFLPSSFKESKLFR 493
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14233.3098.1 vs. uniprot
Match: D7G0U2_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U2_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.410e-22
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:   19 SAGRLLRQLPYVPTRFQQLSYTFFGLQVLFLVLVFAVLALTRLARIIDTDLGGNSVAAEFLLFVLNTRQDHTASVWIALGFALQLLLLFLPSSLKECALLR 321
            ++GRLLR+LPYVP RF+QLSY FFGLQ + L +V+ + AL RL   ++ D+GG ++AA+ LL V   RQDH A+V I   + LQL +LFLPSSLKE   LR
Sbjct:  588 TSGRLLRKLPYVPNRFRQLSYRFFGLQAILLGVVYVMFALWRLVDTLNDDVGGKTLAAQLLLSV-KARQDHLATVSILCAYTLQLFVLFLPSSLKESKFLR 687
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14233.3098.1 vs. uniprot
Match: A0A6H5JIC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC3_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 8.440e-9
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:   10 RIASAGRLLRQLPYVPTRFQQLSYTFFGLQV 102
            RI SAGRLLRQLPYVPTRFQQLSYTFFGLQV
Sbjct: 1073 RITSAGRLLRQLPYVPTRFQQLSYTFFGLQV 1103
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14233.3098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LRA0_ECTSI1.980e-5193.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEN2_ECTSI1.710e-2659.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRH3_9PHAE4.350e-2658.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEN4_ECTSI1.830e-2456.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0U2_ECTSI1.410e-2255.45Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JIC3_9PHAE8.440e-996.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14233contigE-fasciculatus_F_contig14233:1602..2799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue9.6e-23
Seed eggNOG ortholog2880.D8LEN2
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons3
Model size322
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14233.3098.1prot_E-fasciculatus_F_contig14233.3098.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14233 1602..2799 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927914.4277005-CDS-E-fasciculatus_F_contig14233:1601..16971622927914.4277005-CDS-E-fasciculatus_F_contig14233:1601..1697Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14233 1602..1697 -
1695995749.5219793-CDS-E-fasciculatus_F_contig14233:1601..16971695995749.5219793-CDS-E-fasciculatus_F_contig14233:1601..1697Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14233 1602..1697 -
1622927914.441602-CDS-E-fasciculatus_F_contig14233:1927..20531622927914.441602-CDS-E-fasciculatus_F_contig14233:1927..2053Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14233 1928..2053 -
1695995749.5318184-CDS-E-fasciculatus_F_contig14233:1927..20531695995749.5318184-CDS-E-fasciculatus_F_contig14233:1927..2053Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14233 1928..2053 -
1622927914.458731-CDS-E-fasciculatus_F_contig14233:2700..27991622927914.458731-CDS-E-fasciculatus_F_contig14233:2700..2799Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14233 2701..2799 -
1695995749.540902-CDS-E-fasciculatus_F_contig14233:2700..27991695995749.540902-CDS-E-fasciculatus_F_contig14233:2700..2799Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14233 2701..2799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14233.3098.1

>prot_E-fasciculatus_F_contig14233.3098.1 ID=prot_E-fasciculatus_F_contig14233.3098.1|Name=mRNA_E-fasciculatus_F_contig14233.3098.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=107bp
MVWRIASAGRLLRQLPYVPTRFQQLSYTFFGLQVLFLVLVFAVLALTRLA
RIIDTDLGGNSVAAEFLLFVLNTRQDHTASVWIALGFALQLLLLFLPSSL
KECALLR
back to top

mRNA from alignment at E-fasciculatus_F_contig14233:1602..2799-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14233.3098.1 ID=mRNA_E-fasciculatus_F_contig14233.3098.1|Name=mRNA_E-fasciculatus_F_contig14233.3098.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1198bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14233:1602..2799- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGTGGAGAATCGCCAGCGCGGGGCGCCTGCTTCGACAGCTCCCGTA
CGTCCCGACGCGGTTCCAGCAGCTGTCATACACCTTCTTCGGCCTGCAGG
TGACGGAAAAGGAAAGGAGGTGTTGCGAAATTGGACGGAAAATGAGCTGC
TGCTAGAGCCGTGATAGCCTAAAAGGCCCGATCCGTAGGAACGGATCAAA
ATCTCCGAAGATGATGTTGGGTTTCGATGCAGCGCTGTTTTGACAAGCCA
AGGAAGAATAATCTCGACGATTCATCGAATTTCGACTTAGGAGTGCGTAC
GTACGAATGTGCTTCCTGAATGTGAAAAAAATACCGCTCTACACTACTGT
CTGTTTTTTATATGCCGACCCACGATCACCCTGAGCTGTTGTACACACTG
CTCACTGACCGACCGACCGCTGTGTTCGATGGTGTTCGATGGTGTGCGGG
GGGTCCGCCGGGGTCGCACGGCCTAGGAAGACGCCAGTCCTCCCAAGTGA
TGTTCCCACCTCCCTCTCTTGCTTTGAAGCGTCGTGGAGCGCTTTATCTT
GCTCTCTGCGCACACGTGCACGCAATTGCACGCGCTCGTGTTATTTCGTT
GGCCCCGCCGCACGGTTTCGTCGGTCCCCCGAGAAAACAACAAACAACGC
CTCCCCATGACGACAGTATCTCAGGGCTTCTCGCCGCTCTTGTGCTGATT
TTTTTGTTTTTCCTTCTCGTGTTGTGTTTTTTTTTCTGTTTTGAAGGTGT
TGTTCCTTGTCCTAGTGTTCGCGGTGCTGGCGCTGACGAGGCTGGCGAGG
ATCATCGATACCGACTTGGGGGGAAACTCGGTGGCCGCTGAGTTCTTGCT
CTTCGTGCTCAACACGAGACAGGTCGGTCGGGGCAGGGGACTTGCTCGGA
ACAGCGTAAAATTCCATCCGCAGATGCGGCGTATGTAATGGAGTCCAGAA
CATACTCCAAATTAGAGCCAACTCACCGCCCACTGGGGTGGTCGCGCTGC
AACCGGCCCTGATCCCCCCCCCGCCATCCTCCGCCACCCCAATGCCTCAC
TTTTATGTTTGACGCATTCACACACCACCGCTAACGGTGGCGATTCGTTC
AGGACCATACGGCGTCGGTTTGGATTGCATTGGGCTTTGCCCTGCAGCTG
CTGCTGCTGTTTCTCCCCTCGTCGCTGAAGGAGTGTGCCTTGCTTCGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14233:1602..2799-

>mRNA_E-fasciculatus_F_contig14233.3098.1 ID=mRNA_E-fasciculatus_F_contig14233.3098.1|Name=mRNA_E-fasciculatus_F_contig14233.3098.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14233:1602..2799- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGTGGAGAATCGCCAGCGCGGGGCGCCTGCTTCGACAGCTCCCGTA
CGTCCCGACGCGGTTCCAGCAGCTGTCATACACCTTCTTCGGCCTGCAGA
TGGTGTGGAGAATCGCCAGCGCGGGGCGCCTGCTTCGACAGCTCCCGTAC
GTCCCGACGCGGTTCCAGCAGCTGTCATACACCTTCTTCGGCCTGCAGGT
GTTGTTCCTTGTCCTAGTGTTCGCGGTGCTGGCGCTGACGAGGCTGGCGA
GGATCATCGATACCGACTTGGGGGGAAACTCGGTGGCCGCTGAGTTCTTG
CTCTTCGTGCTCAACACGAGACAGGTGTTGTTCCTTGTCCTAGTGTTCGC
GGTGCTGGCGCTGACGAGGCTGGCGAGGATCATCGATACCGACTTGGGGG
GAAACTCGGTGGCCGCTGAGTTCTTGCTCTTCGTGCTCAACACGAGACAG
GACCATACGGCGTCGGTTTGGATTGCATTGGGCTTTGCCCTGCAGCTGCT
GCTGCTGTTTCTCCCCTCGTCGCTGAAGGAGTGTGCCTTGCTTCGGGACC
ATACGGCGTCGGTTTGGATTGCATTGGGCTTTGCCCTGCAGCTGCTGCTG
CTGTTTCTCCCCTCGTCGCTGAAGGAGTGTGCCTTGCTTCGG
back to top