mRNA_E-fasciculatus_F_contig14231.3096.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14231.3096.1
Unique NamemRNA_E-fasciculatus_F_contig14231.3096.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14231.3096.1 vs. uniprot
Match: A0A6H5JBB4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB4_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 1.480e-105
Identity = 214/287 (74.56%), Postives = 224/287 (78.05%), Query Frame = 1 
Query:    1 AAEERRGGAGTMPGKALRRNTGGEGLVVQLLLLSPEEATGGDGSSESEQLTLADSWKRDWSSDSLDLSRLSFWSDADGHRPREAADDE--SPP---ADFLASEWGGAARTVHALAERLGGVSPAEACGWNDVRVAAEGGGRRSS-GWVTLRDIGHLLPGAAGRDANAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------SATATASEREKTACLMGLVAFLAARPEVARVSALPRAELFNAVAGRIVQGGSATTQPIWDRGVDGSGEVVQVREGG 825
            A+EERR GAGT+PGKALRRNTGGEGLVVQLLL SPE      GS ES    LA+SWKR WSSDSLDLSRLSFWSDADGHRPREA D++  SPP   ADFLA EWG AARTVHALAERLGGVSPAEACGWN VRV AEGGGR SS GWVTLRDIGHLLP  AGRD +AP      XXXXXXXXXXXXX                        S +A+ASEREKTACLMGLV+FLAARPEV RVSALPRAELFNAVAGRIVQGGSATTQPIWDRGVDGSGEVVQV + G
Sbjct:  209 ASEERR-GAGTLPGKALRRNTGGEGLVVQLLL-SPEAT----GSRESALAALAESWKRSWSSDSLDLSRLSFWSDADGHRPREADDEQAPSPPRTAADFLAREWGSAARTVHALAERLGGVSPAEACGWNGVRVTAEGGGRSSSAGWVTLRDIGHLLP-VAGRDDHAPPPRQVRXXXXXXXXXXXXXVNGNRSAGSSGGHPASGDRGMDDGSGSASASEREKTACLMGLVSFLAARPEVVRVSALPRAELFNAVAGRIVQGGSATTQPIWDRGVDGSGEVVQVVDSG 488
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BLAST of mRNA_E-fasciculatus_F_contig14231.3096.1 vs. uniprot
Match: D8LK25_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK25_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 1.000e-99
Identity = 203/284 (71.48%), Postives = 213/284 (75.00%), Query Frame = 1 
Query:    1 AAEERRGGAGTMPGKALRRNTGGEGLVVQLLLLSPEEATGGDGSSESEQLTLADSWKRDWSSDSLDLSRLSFWSDADGHRPREAADDESPP------ADFLASEWGGAARTVHALAERLGGVSPAEACGWNDVRVAAEGGGRRSS-GWVTLRDIGHLLPGAAGRDANAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--SATATASEREKTACLMGLVAFLAARPEVARVSALPRAELFNAVAGRIVQGGSATTQPIWDRGVDGSGEVVQVREGG 825
            A+ ERR GAGT+PGKALR NTGGEGLVVQLLL SPE      GS ES    LA SWKR WSSD LDL RLSFWSDADGHRPREA D+++P       ADFLA EWG AARTVHALAERLGGVSPAEACGWNDVRVAAEGGGR SS GWVTLRDIGHLL GA   +   P           XXXXXXXXX                   S +A+ASEREKTACLMGLV+FLAARPEVARVSALPRAELFNAVAGRIVQGGSATTQPIWDRGVDGSGEVVQV + G
Sbjct:  209 ASGERR-GAGTLPGKALRHNTGGEGLVVQLLL-SPETT----GSRESALAALAQSWKRGWSSDLLDLGRLSFWSDADGHRPREAGDEQAPXXXXXTAADFLAREWGSAARTVHALAERLGGVSPAEACGWNDVRVAAEGGGRSSSAGWVTLRDIGHLLHGAERDERAQPPRQARSSDTSGXXXXXXXXXSAGSSGGHPASGDGGMDDGSGSASASEREKTACLMGLVSFLAARPEVARVSALPRAELFNAVAGRIVQGGSATTQPIWDRGVDGSGEVVQVVDSG 486
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BLAST of mRNA_E-fasciculatus_F_contig14231.3096.1 vs. uniprot
Match: D8LU20_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU20_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 9.120e-10
Identity = 36/67 (53.73%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  613 ASEREKTACLMGLVAFLAARPEVARVSALPRAELFNAVAGRIVQGGSATTQPIWDRGVDGSGEVVQV 813
            A    +TAC MGL++ LAA+PEV RVS L  A L+NAVA  +VQ  + T  P+ D G+DG+GEV+QV
Sbjct:  240 APSEARTACYMGLLSQLAAKPEVLRVSPLQSASLYNAVANALVQSATTTETPLLDAGLDGTGEVIQV 306
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BLAST of mRNA_E-fasciculatus_F_contig14231.3096.1 vs. uniprot
Match: D8LSW0_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW0_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 4.020e-9
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  628 KTACLMGLVAFLAARPEVARVSALPRAELFNAVAGRIVQGGSATTQPIWDRGVDGSGEVVQVREGG 825
            +TAC MGL++ LAA+PEV RVS L  A L NAVA  +VQ  + T  P+ D G+DG+GEV+QV + G
Sbjct:  292 RTACYMGLLSQLAAKPEVLRVSPLQSARLHNAVANALVQSATTTETPLLDAGLDGTGEVIQVVDSG 357
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BLAST of mRNA_E-fasciculatus_F_contig14231.3096.1 vs. uniprot
Match: D8LNG6_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG6_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.330e-9
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:  634 ACLMGLVAFLAARPEVARVSALPRAELFNAVAGRIVQGGSATTQPIWDRGVDGSGEVVQVREGG 825
            AC MGLV+FLA RPEV RVS  P   + NA A  ++Q  SAT  P+ D G+DG+GE++QV + G
Sbjct:  316 ACFMGLVSFLAGRPEVLRVSPRPTKRVLNAAARGVIQSASATDTPLTDAGLDGTGEIIQVIDSG 379
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BLAST of mRNA_E-fasciculatus_F_contig14231.3096.1 vs. uniprot
Match: A0A4D9D260_9STRA (Subtilisin n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D260_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.100e-6
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:  625 EKTACLMGLVAFLAARPEVARVSALPRAELFNAVAGRIVQGGSATTQPIWDRGVDGSGEVVQVREGG 825
            + TACL  LVA+ A+ PEV  +   P  +  +A+A   VQ G  T+ P+WD G+DGSG+++QV + G
Sbjct:  326 DATACLTSLVAYFASHPEVIFLETFPIVKPSDAIAAATVQSGEQTSTPLWDAGLDGSGQIIQVADTG 392
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BLAST of mRNA_E-fasciculatus_F_contig14231.3096.1 vs. uniprot
Match: A0A7S2PJJ5_9STRA (Subtilisin (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PJJ5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.970e-6
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:  637 CLMGLVAFLAARPEVARVSALPRAELFNAVAGRIVQGGSATTQPIWDRGVDGSGEVVQVREGG 825
            C++ L+A L+A PEV  V A+P     N +A  I Q G    +P WD+G+ GSG++VQV + G
Sbjct:    5 CVLSLIASLSAAPEVCSVDAVPEVSTMNDIAQWITQSGVDNYRPFWDKGLTGSGQIVQVSDTG 67
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BLAST of mRNA_E-fasciculatus_F_contig14231.3096.1 vs. uniprot
Match: A0A6H5JQT4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.090e-5
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:  634 ACLMGLVAFLAARPEVARVSALPRAELFNAVAGRIVQGGSATTQPIWDRGVDGSGEVVQVREGG 825
            AC MGLV+FLA++PEV RV+      L NA A   +Q  + T  P+ D G+DG+G+VVQV + G
Sbjct:  309 ACFMGLVSFLASKPEVLRVAPRQSQALLNASARANIQSATVTDTPLTDAGLDGTGQVVQVIDSG 372
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14231.3096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JBB4_9PHAE1.480e-10574.56Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LK25_ECTSI1.000e-9971.48Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LU20_ECTSI9.120e-1053.73Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LSW0_ECTSI4.020e-954.55Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LNG6_ECTSI5.330e-953.13Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A4D9D260_9STRA1.100e-643.28Subtilisin n=1 Tax=Nannochloropsis salina CCMP1776... [more]
A0A7S2PJJ5_9STRA5.970e-642.86Subtilisin (Fragment) n=1 Tax=Leptocylindrus danic... [more]
A0A6H5JQT4_9PHAE1.090e-548.44Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14231contigE-fasciculatus_F_contig14231:1993..2856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog2880.D8LNG6
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGsCOG1404@1,KOG1114@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionKP-43 peptidase
Ec32 orthologEc-06_007900.1
Exons1
Model size864
Cds size864
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927914.290828-CDS-E-fasciculatus_F_contig14231:1992..28561622927914.290828-CDS-E-fasciculatus_F_contig14231:1992..2856Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14231 1993..2856 +
1695995749.4909256-CDS-E-fasciculatus_F_contig14231:1992..28561695995749.4909256-CDS-E-fasciculatus_F_contig14231:1992..2856Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14231 1993..2856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14231.3096.1prot_E-fasciculatus_F_contig14231.3096.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14231 1993..2856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14231.3096.1

>prot_E-fasciculatus_F_contig14231.3096.1 ID=prot_E-fasciculatus_F_contig14231.3096.1|Name=mRNA_E-fasciculatus_F_contig14231.3096.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=288bp
AAEERRGGAGTMPGKALRRNTGGEGLVVQLLLLSPEEATGGDGSSESEQL
TLADSWKRDWSSDSLDLSRLSFWSDADGHRPREAADDESPPADFLASEWG
GAARTVHALAERLGGVSPAEACGWNDVRVAAEGGGRRSSGWVTLRDIGHL
LPGAAGRDANAPAPSSDTSGGGGGNGDGSAGGSGGDTASGDGGMNNGGSS
ATATASEREKTACLMGLVAFLAARPEVARVSALPRAELFNAVAGRIVQGG
SATTQPIWDRGVDGSGEVVQVREGGGQERRTNREREV*
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mRNA from alignment at E-fasciculatus_F_contig14231:1993..2856+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14231.3096.1 ID=mRNA_E-fasciculatus_F_contig14231.3096.1|Name=mRNA_E-fasciculatus_F_contig14231.3096.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=864bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14231:1993..2856+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGCGGAGGAGCGGCGGGGGGGAGCGGGCACGATGCCAGGGAAGGCATT
GCGGCGCAACACCGGGGGGGAGGGCTTGGTGGTGCAGCTGCTGCTGCTGT
CCCCAGAAGAAGCCACCGGCGGCGACGGCAGCAGCGAGAGCGAGCAGCTG
ACCCTTGCGGACAGCTGGAAGCGAGACTGGTCTTCGGACTCGCTAGACCT
GAGCAGGTTGTCCTTCTGGTCCGACGCCGACGGCCACCGCCCGCGTGAGG
CAGCAGACGACGAGTCTCCTCCGGCGGATTTCCTGGCGAGCGAGTGGGGC
GGCGCCGCCCGGACGGTGCACGCCCTGGCCGAGCGGCTCGGCGGGGTCTC
CCCCGCGGAGGCGTGCGGGTGGAACGACGTCAGGGTGGCGGCGGAAGGGG
GAGGACGGCGGTCGTCTGGCTGGGTCACCTTGCGCGACATCGGCCACCTC
CTGCCCGGCGCCGCCGGTAGAGACGCTAACGCCCCCGCCCCATCTTCGGA
CACAAGCGGCGGCGGTGGCGGGAACGGCGACGGTTCGGCAGGGGGTTCCG
GCGGTGACACTGCGTCGGGAGACGGTGGGATGAATAACGGCGGTAGTAGC
GCTACCGCTACCGCTAGCGAGCGGGAAAAGACGGCGTGCCTGATGGGGCT
CGTGGCCTTCCTGGCGGCGAGGCCCGAGGTGGCCAGGGTGTCGGCGCTGC
CGAGGGCGGAGCTGTTCAACGCCGTGGCCGGTCGCATCGTGCAGGGGGGC
TCGGCGACGACCCAGCCGATCTGGGACCGCGGGGTGGACGGGTCGGGAGA
GGTGGTCCAGGTGAGGGAAGGGGGGGGGCAGGAGAGGCGTACTAACAGAG
AGAGAGAAGTTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14231:1993..2856+

>mRNA_E-fasciculatus_F_contig14231.3096.1 ID=mRNA_E-fasciculatus_F_contig14231.3096.1|Name=mRNA_E-fasciculatus_F_contig14231.3096.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1728bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14231:1993..2856+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGCGGAGGAGCGGCGGGGGGGAGCGGGCACGATGCCAGGGAAGGCATT
GCGGCGCAACACCGGGGGGGAGGGCTTGGTGGTGCAGCTGCTGCTGCTGT
CCCCAGAAGAAGCCACCGGCGGCGACGGCAGCAGCGAGAGCGAGCAGCTG
ACCCTTGCGGACAGCTGGAAGCGAGACTGGTCTTCGGACTCGCTAGACCT
GAGCAGGTTGTCCTTCTGGTCCGACGCCGACGGCCACCGCCCGCGTGAGG
CAGCAGACGACGAGTCTCCTCCGGCGGATTTCCTGGCGAGCGAGTGGGGC
GGCGCCGCCCGGACGGTGCACGCCCTGGCCGAGCGGCTCGGCGGGGTCTC
CCCCGCGGAGGCGTGCGGGTGGAACGACGTCAGGGTGGCGGCGGAAGGGG
GAGGACGGCGGTCGTCTGGCTGGGTCACCTTGCGCGACATCGGCCACCTC
CTGCCCGGCGCCGCCGGTAGAGACGCTAACGCCCCCGCCCCATCTTCGGA
CACAAGCGGCGGCGGTGGCGGGAACGGCGACGGTTCGGCAGGGGGTTCCG
GCGGTGACACTGCGTCGGGAGACGGTGGGATGAATAACGGCGGTAGTAGC
GCTACCGCTACCGCTAGCGAGCGGGAAAAGACGGCGTGCCTGATGGGGCT
CGTGGCCTTCCTGGCGGCGAGGCCCGAGGTGGCCAGGGTGTCGGCGCTGC
CGAGGGCGGAGCTGTTCAACGCCGTGGCCGGTCGCATCGTGCAGGGGGGC
TCGGCGACGACCCAGCCGATCTGGGACCGCGGGGTGGACGGGTCGGGAGA
GGTGGTCCAGGTGAGGGAAGGGGGGGGGCAGGAGAGGCGTACTAACAGAG
AGAGAGAAGTTTGAGCGGCGGAGGAGCGGCGGGGGGGAGCGGGCACGATG
CCAGGGAAGGCATTGCGGCGCAACACCGGGGGGGAGGGCTTGGTGGTGCA
GCTGCTGCTGCTGTCCCCAGAAGAAGCCACCGGCGGCGACGGCAGCAGCG
AGAGCGAGCAGCTGACCCTTGCGGACAGCTGGAAGCGAGACTGGTCTTCG
GACTCGCTAGACCTGAGCAGGTTGTCCTTCTGGTCCGACGCCGACGGCCA
CCGCCCGCGTGAGGCAGCAGACGACGAGTCTCCTCCGGCGGATTTCCTGG
CGAGCGAGTGGGGCGGCGCCGCCCGGACGGTGCACGCCCTGGCCGAGCGG
CTCGGCGGGGTCTCCCCCGCGGAGGCGTGCGGGTGGAACGACGTCAGGGT
GGCGGCGGAAGGGGGAGGACGGCGGTCGTCTGGCTGGGTCACCTTGCGCG
ACATCGGCCACCTCCTGCCCGGCGCCGCCGGTAGAGACGCTAACGCCCCC
GCCCCATCTTCGGACACAAGCGGCGGCGGTGGCGGGAACGGCGACGGTTC
GGCAGGGGGTTCCGGCGGTGACACTGCGTCGGGAGACGGTGGGATGAATA
ACGGCGGTAGTAGCGCTACCGCTACCGCTAGCGAGCGGGAAAAGACGGCG
TGCCTGATGGGGCTCGTGGCCTTCCTGGCGGCGAGGCCCGAGGTGGCCAG
GGTGTCGGCGCTGCCGAGGGCGGAGCTGTTCAACGCCGTGGCCGGTCGCA
TCGTGCAGGGGGGCTCGGCGACGACCCAGCCGATCTGGGACCGCGGGGTG
GACGGGTCGGGAGAGGTGGTCCAGGTGAGGGAAGGGGGGGGGCAGGAGAG
GCGTACTAACAGAGAGAGAGAAGTTTGA
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