mRNA_E-fasciculatus_F_contig14231.3095.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14231.3095.1
Unique NamemRNA_E-fasciculatus_F_contig14231.3095.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14231.3095.1 vs. uniprot
Match: A0A6H5JBB4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB4_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.280e-27
Identity = 78/101 (77.23%), Postives = 82/101 (81.19%), Query Frame = -2 
Query:    3 FFGHDEEAFRSAVDWQHSRLVATAAXXXXXXXXXXXXG-------------EAVGRSDGGTGTFVAFTSHARAARGREALSAALSPSSVVTAAHNREQGGC 266
            FFGHDEEAFR AVDW HSRL+AT  XXXXXXXXXXXXG             EAVGRS GG+GTFVAFTSHARAARGREALSA LSP+SV+TAAHNREQGGC
Sbjct:    7 FFGHDEEAFRLAVDWHHSRLLATXXXXXXXXXXXXXXGDNQGATGAAAQGEEAVGRS-GGSGTFVAFTSHARAARGREALSAVLSPTSVLTAAHNREQGGC 106
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BLAST of mRNA_E-fasciculatus_F_contig14231.3095.1 vs. uniprot
Match: D8LK25_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK25_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 4.280e-27
Identity = 78/99 (78.79%), Postives = 81/99 (81.82%), Query Frame = -2 
Query:    3 FFGHDEEAFRSAVDWQHSRLVATAAXXXXXXXXXXXXG-----------EAVGRSDGGTGTFVAFTSHARAARGREALSAALSPSSVVTAAHNREQGGC 266
            FFGHDEEAFR AVDWQHSRL+ATA XXXXXXXXXXXX            EAV R  GGTGTFVAFTSHAR ARGREALSAALSP+SV+TAAHNREQGGC
Sbjct:    7 FFGHDEEAFRLAVDWQHSRLLATAXXXXXXXXXXXXXXXXXXXXAEGEKEAVARR-GGTGTFVAFTSHARGARGREALSAALSPTSVLTAAHNREQGGC 104
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14231.3095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBB4_9PHAE2.280e-2777.23Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 Tax... [more]
D8LK25_ECTSI4.280e-2778.79Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14231contigE-fasciculatus_F_contig14231:1371..1637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_007920.1
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927914.2537966-CDS-E-fasciculatus_F_contig14231:1370..16371622927914.2537966-CDS-E-fasciculatus_F_contig14231:1370..1637Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14231 1371..1637 -
1695995749.4819465-CDS-E-fasciculatus_F_contig14231:1370..16371695995749.4819465-CDS-E-fasciculatus_F_contig14231:1370..1637Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14231 1371..1637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14231.3095.1prot_E-fasciculatus_F_contig14231.3095.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14231 1371..1637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14231.3095.1

>prot_E-fasciculatus_F_contig14231.3095.1 ID=prot_E-fasciculatus_F_contig14231.3095.1|Name=mRNA_E-fasciculatus_F_contig14231.3095.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=89bp
KHPPCSRLWAAVTTDDGDRAADSASRPLAARAWLVNATNVPVPPSLRPTA
SPPAAAAAAAAAAAAAVATRRECCQSTADRNASSSCPKK
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mRNA from alignment at E-fasciculatus_F_contig14231:1371..1637-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14231.3095.1 ID=mRNA_E-fasciculatus_F_contig14231.3095.1|Name=mRNA_E-fasciculatus_F_contig14231.3095.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=267bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14231:1371..1637- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCACCCGCCCTGCTCCCGGTTGTGGGCCGCCGTCACCACCGACGACGG
GGACAGGGCTGCCGATAGCGCCTCGCGGCCCCTGGCGGCGCGGGCGTGGC
TCGTGAACGCGACAAACGTTCCCGTTCCTCCGTCGCTGCGTCCCACCGCT
TCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGT
TGCGACGAGGCGTGAGTGTTGCCAATCCACCGCCGATCGAAACGCTTCCT
CGTCGTGCCCGAAGAAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14231:1371..1637-

>mRNA_E-fasciculatus_F_contig14231.3095.1 ID=mRNA_E-fasciculatus_F_contig14231.3095.1|Name=mRNA_E-fasciculatus_F_contig14231.3095.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14231:1371..1637- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCACCCGCCCTGCTCCCGGTTGTGGGCCGCCGTCACCACCGACGACGG
GGACAGGGCTGCCGATAGCGCCTCGCGGCCCCTGGCGGCGCGGGCGTGGC
TCGTGAACGCGACAAACGTTCCCGTTCCTCCGTCGCTGCGTCCCACCGCT
TCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGT
TGCGACGAGGCGTGAGTGTTGCCAATCCACCGCCGATCGAAACGCTTCCT
CGTCGTGCCCGAAGAAAAAGCACCCGCCCTGCTCCCGGTTGTGGGCCGCC
GTCACCACCGACGACGGGGACAGGGCTGCCGATAGCGCCTCGCGGCCCCT
GGCGGCGCGGGCGTGGCTCGTGAACGCGACAAACGTTCCCGTTCCTCCGT
CGCTGCGTCCCACCGCTTCTCCTCCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGTTGCGACGAGGCGTGAGTGTTGCCAATCCACCGC
CGATCGAAACGCTTCCTCGTCGTGCCCGAAGAAA
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