mRNA_E-fasciculatus_F_contig14227.3091.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14227.3091.1
Unique NamemRNA_E-fasciculatus_F_contig14227.3091.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14227.3091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14227contigE-fasciculatus_F_contig14227:338..743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size408
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927912.9653275-CDS-E-fasciculatus_F_contig14227:337..6761622927912.9653275-CDS-E-fasciculatus_F_contig14227:337..676Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14227 338..676 +
1695995749.232818-CDS-E-fasciculatus_F_contig14227:337..6761695995749.232818-CDS-E-fasciculatus_F_contig14227:337..676Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14227 338..676 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927912.9809923-UTR-E-fasciculatus_F_contig14227:676..7431622927912.9809923-UTR-E-fasciculatus_F_contig14227:676..743Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14227 677..743 +
1695995749.2418294-UTR-E-fasciculatus_F_contig14227:676..7431695995749.2418294-UTR-E-fasciculatus_F_contig14227:676..743Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14227 677..743 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14227.3091.1prot_E-fasciculatus_F_contig14227.3091.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14227 338..676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14227.3091.1

>prot_E-fasciculatus_F_contig14227.3091.1 ID=prot_E-fasciculatus_F_contig14227.3091.1|Name=mRNA_E-fasciculatus_F_contig14227.3091.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=113bp
AAVVARVHGNFSWSGTWSRLCNILVSRFFFLVVSTLHTTLEQRCNPSFGL
LEYKNKIDTCSSSCWGEGPGPKNKSLLYIQPSFQKPIAPSMFFLRLTVLQ
HAKYATPRKQFF*
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mRNA from alignment at E-fasciculatus_F_contig14227:338..743+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14227.3091.1 ID=mRNA_E-fasciculatus_F_contig14227.3091.1|Name=mRNA_E-fasciculatus_F_contig14227.3091.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=406bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14227:338..743+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGCAGTTGTAGCCCGTGTACACGGAAATTTCTCATGGTCGGGGACGTG
GTCGAGGCTTTGCAACATCTTGGTTTCGCGATTTTTTTTCTTGGTGGTCT
CGACTCTGCACACAACCCTGGAGCAGCGTTGCAATCCTTCATTTGGCTTG
CTTGAGTACAAAAATAAGATCGATACATGCAGTAGCTCTTGTTGGGGCGA
GGGACCAGGCCCAAAAAACAAATCGCTTCTGTACATACAGCCTTCCTTCC
AAAAACCAATTGCCCCATCCATGTTTTTCTTGAGACTTACGGTACTCCAG
CACGCAAAGTACGCAACCCCCCGAAAGCAATTTTTTTAGATACACACTTC
GAGAGCGTCACTCTAGACCCACCAGGTTTCGTCACACGTCCAGACTTGCT
ACTTCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14227:338..743+

>mRNA_E-fasciculatus_F_contig14227.3091.1 ID=mRNA_E-fasciculatus_F_contig14227.3091.1|Name=mRNA_E-fasciculatus_F_contig14227.3091.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=678bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14227:338..743+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGCAGTTGTAGCCCGTGTACACGGAAATTTCTCATGGTCGGGGACGTG
GTCGAGGCTTTGCAACATCTTGGTTTCGCGATTTTTTTTCTTGGTGGTCT
CGACTCTGCACACAACCCTGGAGCAGCGTTGCAATCCTTCATTTGGCTTG
CTTGAGTACAAAAATAAGATCGATACATGCAGTAGCTCTTGTTGGGGCGA
GGGACCAGGCCCAAAAAACAAATCGCTTCTGTACATACAGCCTTCCTTCC
AAAAACCAATTGCCCCATCCATGTTTTTCTTGAGACTTACGGTACTCCAG
CACGCAAAGTACGCAACCCCCCGAAAGCAATTTTTTTAGGCTGCAGTTGT
AGCCCGTGTACACGGAAATTTCTCATGGTCGGGGACGTGGTCGAGGCTTT
GCAACATCTTGGTTTCGCGATTTTTTTTCTTGGTGGTCTCGACTCTGCAC
ACAACCCTGGAGCAGCGTTGCAATCCTTCATTTGGCTTGCTTGAGTACAA
AAATAAGATCGATACATGCAGTAGCTCTTGTTGGGGCGAGGGACCAGGCC
CAAAAAACAAATCGCTTCTGTACATACAGCCTTCCTTCCAAAAACCAATT
GCCCCATCCATGTTTTTCTTGAGACTTACGGTACTCCAGCACGCAAAGTA
CGCAACCCCCCGAAAGCAATTTTTTTAG
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