mRNA_E-fasciculatus_F_contig14225.3090.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14225.3090.1
Unique NamemRNA_E-fasciculatus_F_contig14225.3090.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14225.3090.1 vs. uniprot
Match: A0A6H5KY72_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY72_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 7.610e-48
Identity = 95/114 (83.33%), Postives = 97/114 (85.09%), Query Frame = 2 
Query:   17 RSKMQADFQAWYEPLASSVEEEDGTVASEGSRLLLEGETKPKAQSFGGDDNARAAXXXXXQGHRQAVVGKTTRERQSEESVAFGGSGKDGANTPTRRPRPPVDAWGTPPASTSH 358
            RSKMQADFQAWYEPLA SVEE+DG VASEGS LL EGE KP AQSF GDDN R A     QGHRQAVVG+TTRERQ EESVAF GSGKD ANTPTRRPRPPVDAWGTPPASTSH
Sbjct:  822 RSKMQADFQAWYEPLACSVEEKDGAVASEGSHLLGEGEKKPTAQSFCGDDNPRTAHHPAPQGHRQAVVGRTTRERQCEESVAFDGSGKDEANTPTRRPRPPVDAWGTPPASTSH 935
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BLAST of mRNA_E-fasciculatus_F_contig14225.3090.1 vs. uniprot
Match: D8LIZ3_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIZ3_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.780e-45
Identity = 94/114 (82.46%), Postives = 95/114 (83.33%), Query Frame = 2 
Query:   17 RSKMQADFQAWYEPLASSVEEEDGTVASEGSRLLLEGETKPKAQSFGG-DDNARAAXXXXXQGHRQAVVGKTTRERQSEESVAFGGSGKDGANTPTRRPRPPVDAWGTPPASTS 355
            RSKMQADFQAWYEPLA SVEEEDG VASEG+  L EG TKPKAQSFGG DD  R A     QGHRQAVVGKTTRERQSEE  AF GSGKDGANTPTRRPRPPVDAWGTPP STS
Sbjct:  758 RSKMQADFQAWYEPLACSVEEEDGAVASEGNCALGEGGTKPKAQSFGGGDDKPRGAHHHAPQGHRQAVVGKTTRERQSEEPAAFDGSGKDGANTPTRRPRPPVDAWGTPPDSTS 871
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14225.3090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY72_9PHAE7.610e-4883.33Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
D8LIZ3_ECTSI1.780e-4582.46Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14225contigE-fasciculatus_F_contig14225:616..2212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue1.1e-40
Seed eggNOG ortholog2880.D8LIZ3
Preferred nameKIF6
KEGG koko:K10397
GOsGO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG4280@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size1138
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14225.3090.1prot_E-fasciculatus_F_contig14225.3090.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14225 1141..2187 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927912.7900517-UTR-E-fasciculatus_F_contig14225:615..11401622927912.7900517-UTR-E-fasciculatus_F_contig14225:615..1140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14225 616..1140 -
1695995749.170465-UTR-E-fasciculatus_F_contig14225:615..11401695995749.170465-UTR-E-fasciculatus_F_contig14225:615..1140Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14225 616..1140 -
1622927912.8394592-UTR-E-fasciculatus_F_contig14225:2187..22121622927912.8394592-UTR-E-fasciculatus_F_contig14225:2187..2212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14225 2188..2212 -
1695995749.2199554-UTR-E-fasciculatus_F_contig14225:2187..22121695995749.2199554-UTR-E-fasciculatus_F_contig14225:2187..2212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14225 2188..2212 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927912.8052058-CDS-E-fasciculatus_F_contig14225:1140..12411622927912.8052058-CDS-E-fasciculatus_F_contig14225:1140..1241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14225 1141..1241 -
1695995749.1946926-CDS-E-fasciculatus_F_contig14225:1140..12411695995749.1946926-CDS-E-fasciculatus_F_contig14225:1140..1241Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14225 1141..1241 -
1622927912.8185217-CDS-E-fasciculatus_F_contig14225:1700..21871622927912.8185217-CDS-E-fasciculatus_F_contig14225:1700..2187Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14225 1701..2187 -
1695995749.207415-CDS-E-fasciculatus_F_contig14225:1700..21871695995749.207415-CDS-E-fasciculatus_F_contig14225:1700..2187Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14225 1701..2187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14225.3090.1

>prot_E-fasciculatus_F_contig14225.3090.1 ID=prot_E-fasciculatus_F_contig14225.3090.1|Name=mRNA_E-fasciculatus_F_contig14225.3090.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=196bp
MQADFQAWYEPLASSVEEEDGTVASEGSRLLLEGETKPKAQSFGGDDNAR
AAHHPPPQGHRQAVVGKTTRERQSEESVAFGGSGKDGANTPTRRPRPPVD
AWGTPPASTSHRRGSPSSAATGSASGGDGGGSNNSESVPTSGGGRGAWHG
GTGGGGLLPPLTGNKEADDDIAAFYRAKEELERRKSAAGRNSGGR*
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mRNA from alignment at E-fasciculatus_F_contig14225:616..2212-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14225.3090.1 ID=mRNA_E-fasciculatus_F_contig14225.3090.1|Name=mRNA_E-fasciculatus_F_contig14225.3090.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1597bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14225:616..2212- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTCACTCTCATTCACAGATCAAAAATGCAAGCAGATTTCCAGGCATGGT
ACGAGCCTTTGGCCTCCTCTGTCGAGGAAGAAGACGGGACGGTGGCCTCG
GAAGGCAGTCGCCTCCTCCTCGAAGGAGAGACAAAGCCAAAAGCCCAGAG
TTTCGGCGGCGACGATAACGCCCGGGCGGCACACCACCCCCCCCCTCAAG
GCCACCGACAAGCCGTCGTCGGGAAGACAACGCGAGAGAGGCAAAGCGAG
GAGTCAGTGGCCTTTGGCGGGAGCGGAAAGGATGGGGCCAACACCCCCAC
GAGAAGGCCGCGGCCTCCGGTGGACGCCTGGGGAACTCCTCCGGCCTCAA
CCAGCCATCGGAGGGGGTCTCCGTCTTCTGCGGCAACCGGGAGCGCTTCG
GGCGGAGATGGCGGCGGTAGCAACAACAGCGAGTCCGTCCCGACAAGCGG
TGGCGGGAGAGGAGCATGGCATGGCGGCACGGGAGGAGGAGGACTGCTTC
CTCCACTTACTGGTGTGTTGGCGAACCTACGTCAAAGGAAGCTTATTGGC
AACCGTTGAGAGGGCAGAACAAACGTGGAAAGTACTATTATACATCCTCA
CGACGCAAACCAGTGATTGAGGCGCGACGGGTCTGTTGAAACCGACTGTT
GGTTTCCTTTCTTGGCGGCTTCGGGCTTCATTATCAAATGTTTGACTGAT
CCAGCATCCTATCACCGCCAGAAAGATTGAAGCAAGCAATTATAGGCCTA
GGACACTACGTCTTCTCTTTGGGGAGAAGTGAGCCCTGTCACGTTTGTCT
AGAACTCGTCACCCTCTCTTGCACAGCTTGCAACTATCCTGAACACGCCC
AATTCGTATGCTGTCCATCAAAGAACCAAAACGGTACCCTCACCTGACCC
CGGCATCGTGCATTGAAACAGATTAGGATTTTGCCTTCACCTTTGCCGGC
CGTAATTCTTTACCGTCTCAGGGAATAAAGAGGCCGACGATGACATCGCT
GCTTTCTATCGCGCCAAAGAGGAGTTGGAGCGCAGAAAGAGCGCTGCCGG
TAGAAATAGCGGAGGAAGATGAGACGGAGTGTAGTGTTTTCCTTGGGTAA
CACGCCGAAGGCTGGGTTCCCGCTCCCTGAATTTATTTCACTCCGTTGTT
CCGTGGAAGAGGACTATAATCAATCGCGTCGAGGTGTCCGTGGTGCTTTG
GTCGAGCGGTGCTCTGCATTTTTTTTATTCGATATTTTTTTGGTTGTTGT
GGGGGCGGCGTCGGACCCCCGTGGGCAGTCATCCACGTAGCGTGCAGAGC
TCACCCGTTTCGGTTGATGTGGTACATAGTTCTAGTCCTGGCGCGAGCGC
TGAATACCGCCGTGCGTTGTGGTGAGGGGAATATCGTGAGTTTCTGCGTT
AGAGCTGTGGTTGTATTCTTGTTGCTGACAGCCGTGTCCGTCCGTCTTGA
GGGTCTGTGTGGAACGCGGCCACCGCTGTTGTCAAGTCTGTTCGTGTGCT
ATTCGTCGGCGTTCAAGGTTTTCTTGTCGTATGACCAGCCGTTTTGCTTG
CCTGAATTGGCGTTGTTTTTCGTTCTGCGGATGGATGTCGCCGGTGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14225:616..2212-

>mRNA_E-fasciculatus_F_contig14225.3090.1 ID=mRNA_E-fasciculatus_F_contig14225.3090.1|Name=mRNA_E-fasciculatus_F_contig14225.3090.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1176bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14225:616..2212- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCAAGCAGATTTCCAGGCATGGTACGAGCCTTTGGCCTCCTCTGTCGA
GGAAGAAGACGGGACGGTGGCCTCGGAAGGCAGTCGCCTCCTCCTCGAAG
GAGAGACAAAGCCAAAAGCCCAGAGTTTCGGCGGCGACGATAACGCCCGG
GCGGCACACCACCCCCCCCCTCAAGGCCACCGACAAGCCGTCGTCGGGAA
GACAACGCGAGAGAGGCAAAGCGAGGAGTCAGTGGCCTTTGGCGGGAGCG
GAAAGGATGGGGCCAACACCCCCACGAGAAGGCCGCGGCCTCCGGTGGAC
GCCTGGGGAACTCCTCCGGCCTCAACCAGCCATCGGAGGGGGTCTCCGTC
TTCTGCGGCAACCGGGAGCGCTTCGGGCGGAGATGGCGGCGGTAGCAACA
ACAGCGAGTCCGTCCCGACAAGCGGTGGCGGGAGAGGAGCATGGCATGGC
GGCACGGGAGGAGGAGGACTGCTTCCTCCACTTACTGATGCAAGCAGATT
TCCAGGCATGGTACGAGCCTTTGGCCTCCTCTGTCGAGGAAGAAGACGGG
ACGGTGGCCTCGGAAGGCAGTCGCCTCCTCCTCGAAGGAGAGACAAAGCC
AAAAGCCCAGAGTTTCGGCGGCGACGATAACGCCCGGGCGGCACACCACC
CCCCCCCTCAAGGCCACCGACAAGCCGTCGTCGGGAAGACAACGCGAGAG
AGGCAAAGCGAGGAGTCAGTGGCCTTTGGCGGGAGCGGAAAGGATGGGGC
CAACACCCCCACGAGAAGGCCGCGGCCTCCGGTGGACGCCTGGGGAACTC
CTCCGGCCTCAACCAGCCATCGGAGGGGGTCTCCGTCTTCTGCGGCAACC
GGGAGCGCTTCGGGCGGAGATGGCGGCGGTAGCAACAACAGCGAGTCCGT
CCCGACAAGCGGTGGCGGGAGAGGAGCATGGCATGGCGGCACGGGAGGAG
GAGGACTGCTTCCTCCACTTACTGGGAATAAAGAGGCCGACGATGACATC
GCTGCTTTCTATCGCGCCAAAGAGGAGTTGGAGCGCAGAAAGAGCGCTGC
CGGTAGAAATAGCGGAGGAAGATGAGGAATAAAGAGGCCGACGATGACAT
CGCTGCTTTCTATCGCGCCAAAGAGGAGTTGGAGCGCAGAAAGAGCGCTG
CCGGTAGAAATAGCGGAGGAAGATGA
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