mRNA_E-fasciculatus_F_contig14223.3088.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14223.3088.1
Unique NamemRNA_E-fasciculatus_F_contig14223.3088.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14223.3088.1 vs. uniprot
Match: A0A6H5J742_9PHAE (B2-adapt-app_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J742_9PHAE)

HSP 1 Score: 472 bits (1215), Expect = 7.000e-159
Identity = 249/252 (98.81%), Postives = 249/252 (98.81%), Query Frame = 1 
Query:    1 KVFFCKYNDPIYVKMEKLETIIRLVNDRNIDQQVLLELKEYAQEVDVEFVRKAVRAIGRCAIKLERAAERCINVLLELIQTKVNYVLQEAVIVIKDIFRKYPNRYESIISALCENLDTLDEPEAKASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKLFLKQPEDTQDMVQRVLQLATEESDDPDLRDRGFVYWRLLSTNPEAAKAVVLSEKPNIADDTFTLEPAVLDMLIGQVSGRTS 756
            KVFFCKYNDPIYVKMEKLETIIRLVNDRNIDQ VLLELKEYAQEVDVEFVRKAVRAIGRCAIKLERAAERCINVLLELIQTKVNYVLQEAVIVIKDIFRKYPNRYESIISALCENLDTLDEPEAKASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKLFLKQPEDTQDMVQRVLQLATEESDDPDLRDRGFVYWRLLSTNPEAAKAVVLSEKPNIADDTFTLEPAVLDMLIGQV GR S
Sbjct:  280 KVFFCKYNDPIYVKMEKLETIIRLVNDRNIDQ-VLLELKEYAQEVDVEFVRKAVRAIGRCAIKLERAAERCINVLLELIQTKVNYVLQEAVIVIKDIFRKYPNRYESIISALCENLDTLDEPEAKASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKLFLKQPEDTQDMVQRVLQLATEESDDPDLRDRGFVYWRLLSTNPEAAKAVVLSEKPNIADDTFTLEPAVLDMLIGQVGGRIS 530
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BLAST of mRNA_E-fasciculatus_F_contig14223.3088.1 vs. uniprot
Match: A0A836CH70_9STRA (Coatomer protein complex, beta sub-unit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH70_9STRA)

HSP 1 Score: 425 bits (1092), Expect = 4.050e-140
Identity = 215/248 (86.69%), Postives = 240/248 (96.77%), Query Frame = 1 
Query:    1 KVFFCKYNDPIYVKMEKLETIIRLVNDRNIDQQVLLELKEYAQEVDVEFVRKAVRAIGRCAIKLERAAERCINVLLELIQTKVNYVLQEAVIVIKDIFRKYPNRYESIISALCENLDTLDEPEAKASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKLFLKQPEDTQDMVQRVLQLATEESDDPDLRDRGFVYWRLLSTNPEAAKAVVLSEKPNIADDTFTLEPAVLDMLIGQVS 744
            KVFFCKYNDPIYVKMEKLE IIRLV+DRNI+Q VLLELKEYAQEVDVEFVR++VRAIGRCAIKLERAA+RCI+VLLELI+TKVNYVLQEAVIVIKDIFR+YPN+YES+I  LCENL+TLDEPEAKA+IIWIIGEYAERIDNADEQL+HFLETFE+ESA+VQLQLLTATVKLFLKQP+ TQDMVQRVL +ATE+SD+PDLRDRGFVYWRLL+TNPEAAKAVVL EKP IADDTFTLEPA+LD+L+GQ++
Sbjct:  330 KVFFCKYNDPIYVKMEKLEIIIRLVSDRNIEQ-VLLELKEYAQEVDVEFVRRSVRAIGRCAIKLERAADRCISVLLELIETKVNYVLQEAVIVIKDIFRRYPNKYESVIGKLCENLETLDEPEAKAAIIWIIGEYAERIDNADEQLDHFLETFEDESADVQLQLLTATVKLFLKQPDTTQDMVQRVLHMATEDSDNPDLRDRGFVYWRLLATNPEAAKAVVLGEKPTIADDTFTLEPALLDLLVGQIA 576
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BLAST of mRNA_E-fasciculatus_F_contig14223.3088.1 vs. uniprot
Match: A0A812T0E9_SYMMI (BETAC-AD protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812T0E9_SYMMI)

HSP 1 Score: 402 bits (1034), Expect = 2.680e-134
Identity = 205/252 (81.35%), Postives = 236/252 (93.65%), Query Frame = 1 
Query:    1 KVFFCKYNDPIYVKMEKLETIIRLVNDRNIDQQVLLELKEYAQEVDVEFVRKAVRAIGRCAIKLERAAERCINVLLELIQTKVNYVLQEAVIVIKDIFRKYPNRYESIISALCENLDTLDEPEAKASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKLFLKQPEDTQDMVQRVLQLATEESDDPDLRDRGFVYWRLLSTNPEAAKAVVLSEKPNIADDTFTLEPAVLDMLIGQVSGRTS 756
            KVFFCKYNDPIYVKMEKL+ IIRL ++RNIDQ VLLE KEYA EVDV+FVRKAVRAIGRCAIKLERAAERCINVLL+LIQTKVNYV+QEAV+VIKDIFRKYPNRYESII+ LC+NL+ LDEPEAKAS++WIIGEYAERIDNADE LE FLETF +E+A+VQLQLLTATVKLFLKQP+ TQDMVQRVL +ATE+SD+PDLRDRG+VYWRLLS++PEAA+AVVLS+KP IADDTF+LEPA+L+ L+GQ++  +S
Sbjct:   92 KVFFCKYNDPIYVKMEKLDIIIRLASERNIDQ-VLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCINVLLDLIQTKVNYVVQEAVVVIKDIFRKYPNRYESIIATLCDNLEDLDEPEAKASMVWIIGEYAERIDNADELLESFLETFHDETAQVQLQLLTATVKLFLKQPDTTQDMVQRVLTMATEDSDNPDLRDRGYVYWRLLSSDPEAARAVVLSDKPEIADDTFSLEPALLEDLMGQLANLSS 342
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BLAST of mRNA_E-fasciculatus_F_contig14223.3088.1 vs. uniprot
Match: A0A7S3HED2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HED2_9STRA)

HSP 1 Score: 384 bits (985), Expect = 3.360e-132
Identity = 194/239 (81.17%), Postives = 222/239 (92.89%), Query Frame = 1 
Query:    1 KVFFCKYNDPIYVKMEKLETIIRLVNDRNIDQQVLLELKEYAQEVDVEFVRKAVRAIGRCAIKLERAAERCINVLLELIQTKVNYVLQEAVIVIKDIFRKYPNRYESIISALCENLDTLDEPEAKASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKLFLKQPEDTQDMVQRVLQLATEESDDPDLRDRGFVYWRLLSTNPEAAKAVVLSEKPNIADDTFTLEPAV 717
            KVFFCKYNDPIYVKMEK+E IIRL +DRN+DQ VLLE KEYA EVDVEFVR++VRAIGRCAIKLE+A ERCINVLL+LIQTKV+YV+QEAV+VIKDIFRKYPNRYES+I+ LCENL+ LDEPEAKAS++WIIGEYA+RIDNADE LE FLETF+EE+A VQLQLLTATVKLFLKQP++TQ+MVQRVL LATE SD+PDLRDRG+VYWRLLS++PEAA+AVVLS KP I DDT TLEP++
Sbjct:   54 KVFFCKYNDPIYVKMEKMEIIIRLASDRNVDQ-VLLEFKEYATEVDVEFVRRSVRAIGRCAIKLEKATERCINVLLDLIQTKVSYVVQEAVVVIKDIFRKYPNRYESVIATLCENLEDLDEPEAKASMVWIIGEYADRIDNADELLESFLETFQEETAMVQLQLLTATVKLFLKQPDNTQEMVQRVLNLATEHSDNPDLRDRGYVYWRLLSSDPEAARAVVLSHKPEIGDDTSTLEPSL 291
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BLAST of mRNA_E-fasciculatus_F_contig14223.3088.1 vs. uniprot
Match: A0A7S0NE38_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0NE38_9EUKA)

HSP 1 Score: 397 bits (1020), Expect = 7.120e-132
Identity = 204/248 (82.26%), Postives = 230/248 (92.74%), Query Frame = 1 
Query:    1 KVFFCKYNDPIYVKMEKLETIIRLVNDRNIDQQVLLELKEYAQEVDVEFVRKAVRAIGRCAIKLERAAERCINVLLELIQTKVNYVLQEAVIVIKDIFRKYPNRYESIISALCENLDTLDEPEAKASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKLFLKQPEDTQDMVQRVLQLATEESDDPDLRDRGFVYWRLLSTNPEAAKAVVLSEKPNIADDTFTLEPAVLDMLIGQVS 744
            KVFFCKYNDPIYVKMEKLE +I+L ++RN+DQ VL+ELKEY+ EVDVEFVR+AVRAIGRCAIKLERAAERCINVLLELIQTKVNYV+QEAVIVIKDIFRK+PNRYESII  LCENLDTLDEPEAKAS+IWIIGEYAERIDNADE LE FLE+FEEE+  VQLQ+LTATVKLFLK+P DTQ MVQ VL LAT++SD+PDLRDRG++YWRLLST+PEAAK VVL+EKPNI+DDTF+L+PAVLD LI  +S
Sbjct:  356 KVFFCKYNDPIYVKMEKLEIMIKLASERNVDQ-VLMELKEYSTEVDVEFVRRAVRAIGRCAIKLERAAERCINVLLELIQTKVNYVVQEAVIVIKDIFRKFPNRYESIIGTLCENLDTLDEPEAKASMIWIIGEYAERIDNADELLEGFLESFEEETPMVQLQMLTATVKLFLKRPADTQKMVQDVLTLATQDSDNPDLRDRGYIYWRLLSTDPEAAKQVVLAEKPNISDDTFSLDPAVLDELISHLS 602
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BLAST of mRNA_E-fasciculatus_F_contig14223.3088.1 vs. uniprot
Match: A0A6A5AWY7_9STRA (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AWY7_9STRA)

HSP 1 Score: 393 bits (1010), Expect = 6.570e-131
Identity = 201/248 (81.05%), Postives = 229/248 (92.34%), Query Frame = 1 
Query:    1 KVFFCKYNDPIYVKMEKLETIIRLVNDRNIDQQVLLELKEYAQEVDVEFVRKAVRAIGRCAIKLERAAERCINVLLELIQTKVNYVLQEAVIVIKDIFRKYPNRYESIISALCENLDTLDEPEAKASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKLFLKQPEDTQDMVQRVLQLATEESDDPDLRDRGFVYWRLLSTNPEAAKAVVLSEKPNIADDTFTLEPAVLDMLIGQVS 744
            KVFFCKYNDPIYVKMEKLE IIRLV++RN+DQ VLLE KEYA EVDV+FVR++VRAIGRCAIKL  AAE+CINVLLELIQTKVNY++QEA+IVIKDIFRKYPN+YESII+ LCENLDTLDEPEAKAS++WIIGEYAERIDNADE L  FL+ FE+E+A VQLQLLTATVKLFLK+P +TQ MVQ VL+ ATEESD+PDLRDRG+VYWRLLS NP+AAKAVVL+EKP I+DDTFTLEPA+LD LIG++S
Sbjct:  380 KVFFCKYNDPIYVKMEKLEIIIRLVSERNVDQ-VLLEFKEYATEVDVDFVRRSVRAIGRCAIKLNNAAEKCINVLLELIQTKVNYIVQEAIIVIKDIFRKYPNQYESIIATLCENLDTLDEPEAKASMVWIIGEYAERIDNADELLHSFLDAFEDETALVQLQLLTATVKLFLKRPNETQAMVQAVLKKATEESDNPDLRDRGYVYWRLLSANPDAAKAVVLAEKPVISDDTFTLEPALLDDLIGKIS 626
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BLAST of mRNA_E-fasciculatus_F_contig14223.3088.1 vs. uniprot
Match: A0A1Z5K9X8_FISSO (AP-1 complex subunit beta-1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9X8_FISSO)

HSP 1 Score: 398 bits (1022), Expect = 2.860e-130
Identity = 206/252 (81.75%), Postives = 230/252 (91.27%), Query Frame = 1 
Query:    1 KVFFCKYNDPIYVKMEKLETIIRLVNDRNIDQQVLLELKEYAQEVDVEFVRKAVRAIGRCAIKLERAAERCINVLLELIQTKVNYVLQEAVIVIKDIFRKYPNRYESIISALCENLDTLDEPEAKASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKLFLKQPEDTQDMVQRVLQLATEESDDPDLRDRGFVYWRLLSTNPEAAKAVVLSEKPNIADDTFTLEPAVLDMLIGQVSGRTS 756
            KVFFCKYNDPIYVKMEKLE II+LV+++NIDQ VLLELKEYA EVDV+FVRKAV AIGRCA+KLERAAERCI VLLELIQTKVNYV+QEAVIVIKD+FR+YPNRYESII+ LC+NLDTLDEP AKAS+IWIIGEYAERIDNADE LE FLETFEEE   VQLQLLTATVK FLK PEDTQDMVQRVL +ATEESD+PDLRDRGF+YWRLLST+P+AAK VVL +KP I DDTF LEPA+L++LIGQ++  +S
Sbjct:  308 KVFFCKYNDPIYVKMEKLEIIIKLVSEKNIDQ-VLLELKEYATEVDVDFVRKAVSAIGRCAVKLERAAERCIAVLLELIQTKVNYVVQEAVIVIKDVFRRYPNRYESIIATLCDNLDTLDEPLAKASMIWIIGEYAERIDNADELLETFLETFEEEDPAVQLQLLTATVKCFLKNPEDTQDMVQRVLDMATEESDNPDLRDRGFIYWRLLSTDPDAAKIVVLGDKPVIEDDTFKLEPALLNILIGQIATLSS 558
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BLAST of mRNA_E-fasciculatus_F_contig14223.3088.1 vs. uniprot
Match: H3GA38_PHYRM (B2-adapt-app_C domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GA38_PHYRM)

HSP 1 Score: 399 bits (1025), Expect = 3.130e-130
Identity = 203/248 (81.85%), Postives = 231/248 (93.15%), Query Frame = 1 
Query:    1 KVFFCKYNDPIYVKMEKLETIIRLVNDRNIDQQVLLELKEYAQEVDVEFVRKAVRAIGRCAIKLERAAERCINVLLELIQTKVNYVLQEAVIVIKDIFRKYPNRYESIISALCENLDTLDEPEAKASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKLFLKQPEDTQDMVQRVLQLATEESDDPDLRDRGFVYWRLLSTNPEAAKAVVLSEKPNIADDTFTLEPAVLDMLIGQVS 744
            KVFFCKYNDPIYVKMEKLE IIRLV++RNI+Q VLLE KEYA EVDVEFVR++VRAIGRCA+KLERAAE+CINVLLELIQTKVNY++QEA+IVIKDIFRKYPN+YESII+ LCENLDTLDEPEAKAS+IWIIGEYAERIDNADE LE F+++F++E+A+VQLQLLTATVKLFLK+P +TQDMVQ+VL  ATEESD+PDLRDRG+VYWRLLS NPEAA AVVL+EKP I DDTF LEP VLD LIG++S
Sbjct:  332 KVFFCKYNDPIYVKMEKLEIIIRLVSERNIEQ-VLLEFKEYATEVDVEFVRRSVRAIGRCAVKLERAAEKCINVLLELIQTKVNYIVQEAIIVIKDIFRKYPNQYESIIATLCENLDTLDEPEAKASMIWIIGEYAERIDNADELLESFMDSFDDETAQVQLQLLTATVKLFLKRPNETQDMVQKVLHKATEESDNPDLRDRGYVYWRLLSANPEAAHAVVLAEKPVINDDTFALEPTVLDELIGKIS 578
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14223.3088.1 vs. uniprot
Match: A0A6U3VDL9_9STRA (AP complex subunit beta n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VDL9_9STRA)

HSP 1 Score: 392 bits (1007), Expect = 5.890e-130
Identity = 203/252 (80.56%), Postives = 229/252 (90.87%), Query Frame = 1 
Query:    1 KVFFCKYNDPIYVKMEKLETIIRLVNDRNIDQQVLLELKEYAQEVDVEFVRKAVRAIGRCAIKLERAAERCINVLLELIQTKVNYVLQEAVIVIKDIFRKYPNRYESIISALCENLDTLDEPEAKASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKLFLKQPEDTQDMVQRVLQLATEESDDPDLRDRGFVYWRLLSTNPEAAKAVVLSEKPNIADDTFTLEPAVLDMLIGQVSGRTS 756
            +VFFCKYNDPIYVKMEKLE II+LV++RNID+ VLLELKEYA EVDV+FVRK+V AIGRCA+KLERAAERCI VLLELI+TKVNYV+QE+VIVIKDIFR+YPNRYESII+ LC+NLDTLDEP AKAS+IWIIGEYAERIDNADE LE FLETFEEE   VQLQLLTATVK FLK PEDTQDMVQRVL LATEESD+PDLRDRGF+YWRLLST+PEAAK VVL +KP I DDT+ LEP +L++LIGQ++  +S
Sbjct:  333 RVFFCKYNDPIYVKMEKLEIIIKLVSERNIDK-VLLELKEYATEVDVDFVRKSVSAIGRCAVKLERAAERCIGVLLELIKTKVNYVVQESVIVIKDIFRRYPNRYESIIATLCDNLDTLDEPLAKASMIWIIGEYAERIDNADELLETFLETFEEEDPAVQLQLLTATVKCFLKNPEDTQDMVQRVLDLATEESDNPDLRDRGFIYWRLLSTDPEAAKMVVLGDKPVIEDDTYKLEPNLLNVLIGQIATLSS 583
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14223.3088.1 vs. uniprot
Match: M4B2Y6_HYAAE (B2-adapt-app_C domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B2Y6_HYAAE)

HSP 1 Score: 398 bits (1022), Expect = 9.170e-130
Identity = 200/248 (80.65%), Postives = 233/248 (93.95%), Query Frame = 1 
Query:    1 KVFFCKYNDPIYVKMEKLETIIRLVNDRNIDQQVLLELKEYAQEVDVEFVRKAVRAIGRCAIKLERAAERCINVLLELIQTKVNYVLQEAVIVIKDIFRKYPNRYESIISALCENLDTLDEPEAKASIIWIIGEYAERIDNADEQLEHFLETFEEESAEVQLQLLTATVKLFLKQPEDTQDMVQRVLQLATEESDDPDLRDRGFVYWRLLSTNPEAAKAVVLSEKPNIADDTFTLEPAVLDMLIGQVS 744
            KVFFCKYNDPIYVKMEKLE IIRLV++RNI+Q VLLE KEYA EVDV+FVR+AV AIGRCA+KL+RAAE+CINVLLELIQTKVNY++QEA+IVIKDIFRKYPN+YESII+ LCENLDTLDEPEAKAS+IWIIGEYAERIDNADE LE F+++F++E+A+VQLQLLTAT+KLFLK+P +TQDMVQ+VLQ ATEESD+PDLRDRG+VYWRLLS NPEAA AVVL+EKP I+DDTF LEP++LD LIG++S
Sbjct:  332 KVFFCKYNDPIYVKMEKLEIIIRLVSERNIEQ-VLLEFKEYATEVDVDFVRRAVHAIGRCAVKLKRAAEKCINVLLELIQTKVNYIVQEAIIVIKDIFRKYPNQYESIIATLCENLDTLDEPEAKASMIWIIGEYAERIDNADELLESFVDSFDDETAQVQLQLLTATIKLFLKRPNETQDMVQKVLQKATEESDNPDLRDRGYVYWRLLSANPEAAHAVVLAEKPVISDDTFALEPSILDELIGKIS 578
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14223.3088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J742_9PHAE7.000e-15998.81B2-adapt-app_C domain-containing protein n=2 Tax=E... [more]
A0A836CH70_9STRA4.050e-14086.69Coatomer protein complex, beta sub-unit n=1 Tax=Tr... [more]
A0A812T0E9_SYMMI2.680e-13481.35BETAC-AD protein (Fragment) n=1 Tax=Symbiodinium m... [more]
A0A7S3HED2_9STRA3.360e-13281.17Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0NE38_9EUKA7.120e-13282.26Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A6A5AWY7_9STRA6.570e-13181.05Adaptin_N domain-containing protein (Fragment) n=1... [more]
A0A1Z5K9X8_FISSO2.860e-13081.75AP-1 complex subunit beta-1 n=2 Tax=Fistulifera so... [more]
H3GA38_PHYRM3.130e-13081.85B2-adapt-app_C domain-containing protein n=2 Tax=P... [more]
A0A6U3VDL9_9STRA5.890e-13080.56AP complex subunit beta n=1 Tax=Ditylum brightwell... [more]
M4B2Y6_HYAAE9.170e-13080.65B2-adapt-app_C domain-containing protein n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14223contigE-fasciculatus_F_contig14223:540..3357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score468.8
Seed ortholog evalue1.6e-129
Seed eggNOG ortholog2880.D8LDW2
KEGG koko:K11825,ko:K12392
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,map04142,map04144,map04721,map04961,map05016
GOsGO:0000278,GO:0000281,GO:0000910,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005886,GO:0005905,GO:0005911,GO:0006950,GO:0006970,GO:0006971,GO:0006996,GO:0007033,GO:0007049,GO:0007154,GO:0008150,GO:0009267,GO:0009506,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0012505,GO:0012506,GO:0012510,GO:0016020,GO:0016043,GO:0016050,GO:0022402,GO:0030054,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030587,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031152,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032502,GO:0032991,GO:0033298,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044764,GO:0045334,GO:0048475,GO:0048856,GO:0050896,GO:0051301,GO:0051703,GO:0051704,GO:0051716,GO:0055044,GO:0061640,GO:0071496,GO:0071840,GO:0071944,GO:0090702,GO:0097708,GO:0098588,GO:0098630,GO:0098743,GO:0098796,GO:0098797,GO:0098805,GO:0099120,GO:1903047
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5096@1,KOG1061@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCoatomer protein complex, beta sub-unit
Ec32 orthologEc-08_003580.1
Exons5
Model size762
Cds size762
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14223.3088.1prot_E-fasciculatus_F_contig14223.3088.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14223 540..3357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927912.4263332-CDS-E-fasciculatus_F_contig14223:539..6351622927912.4263332-CDS-E-fasciculatus_F_contig14223:539..635Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14223 540..635 +
1695995749.072505-CDS-E-fasciculatus_F_contig14223:539..6351695995749.072505-CDS-E-fasciculatus_F_contig14223:539..635Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14223 540..635 +
1622927912.4372258-CDS-E-fasciculatus_F_contig14223:1169..13581622927912.4372258-CDS-E-fasciculatus_F_contig14223:1169..1358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14223 1170..1358 +
1695995749.085386-CDS-E-fasciculatus_F_contig14223:1169..13581695995749.085386-CDS-E-fasciculatus_F_contig14223:1169..1358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14223 1170..1358 +
1622927912.4531212-CDS-E-fasciculatus_F_contig14223:1713..18031622927912.4531212-CDS-E-fasciculatus_F_contig14223:1713..1803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14223 1714..1803 +
1695995749.0957663-CDS-E-fasciculatus_F_contig14223:1713..18031695995749.0957663-CDS-E-fasciculatus_F_contig14223:1713..1803Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14223 1714..1803 +
1622927912.4682014-CDS-E-fasciculatus_F_contig14223:2243..24081622927912.4682014-CDS-E-fasciculatus_F_contig14223:2243..2408Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14223 2244..2408 +
1695995749.109303-CDS-E-fasciculatus_F_contig14223:2243..24081695995749.109303-CDS-E-fasciculatus_F_contig14223:2243..2408Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14223 2244..2408 +
1622927912.6421125-CDS-E-fasciculatus_F_contig14223:3135..33571622927912.6421125-CDS-E-fasciculatus_F_contig14223:3135..3357Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14223 3136..3357 +
1695995749.1194782-CDS-E-fasciculatus_F_contig14223:3135..33571695995749.1194782-CDS-E-fasciculatus_F_contig14223:3135..3357Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14223 3136..3357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14223.3088.1

>prot_E-fasciculatus_F_contig14223.3088.1 ID=prot_E-fasciculatus_F_contig14223.3088.1|Name=mRNA_E-fasciculatus_F_contig14223.3088.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=254bp
KVFFCKYNDPIYVKMEKLETIIRLVNDRNIDQQVLLELKEYAQEVDVEFV
RKAVRAIGRCAIKLERAAERCINVLLELIQTKVNYVLQEAVIVIKDIFRK
YPNRYESIISALCENLDTLDEPEAKASIIWIIGEYAERIDNADEQLEHFL
ETFEEESAEVQLQLLTATVKLFLKQPEDTQDMVQRVLQLATEESDDPDLR
DRGFVYWRLLSTNPEAAKAVVLSEKPNIADDTFTLEPAVLDMLIGQVSGR
TSR*
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mRNA from alignment at E-fasciculatus_F_contig14223:540..3357+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14223.3088.1 ID=mRNA_E-fasciculatus_F_contig14223.3088.1|Name=mRNA_E-fasciculatus_F_contig14223.3088.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2818bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14223:540..3357+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGTGTTCTTCTGCAAGTACAACGACCCGATCTACGTGAAAATGGAGAA
GCTTGAGACAATCATCCGTCTCGTGAACGACCGCAACATCGACCAGGTGC
GACGTGGCCTGATGTGATGCAGCAGCGTGGAGAGCACCGTTGATGTGTGT
CTTTCTTCCTCTCCTCTTGCAACACTCGCCGCGCCTTGGGACGTTGCCTC
GCTTTTCTTTGCAAAAAATGCCTTCAAAGCGTGCGTCTTTCCGCTTCCTG
TTCACCAGGGCGTGTTGGCTCTCGTAGGCGATGATGGTGGTTGTCTTGTT
TTTTTTTTTTTTTGCAACGTTTCTTTGTCGAAGAATTCCTTGTTGATTCG
CGAGGTAGTTGTACGCGAGGCGTTTTTTCCCCTCTTTTTCCGGTCGTTTT
TTCCCCTCTTTTTCCCGTCGTTTTTTCCCCTCTTTTTCCCGTCGTCTGAT
TGGCAGGACGCCCGCCCGACCACACACTGCAAAAGTGACCTCCTCCACTT
GAAGAACACACACATTGTTGTGCGTGTGACTCACGAGGCCTGTTTCGCCC
CGTGTATCGAACCCCGACCCACCAAAACAAGACCACCCTGAATAACACGC
CACCCCCCCGTGCCTGCGTTTCGGCGAGAGCAGGTGCTGCTGGAGCTTAA
GGAGTACGCCCAGGAGGTGGACGTGGAGTTCGTGCGGAAGGCCGTGAGGG
CGATCGGGCGGTGCGCCATCAAGCTGGAGCGCGCGGCGGAGCGGTGCATC
AACGTGCTGCTGGAGCTGATCCAGACCAAGGTCAACTACGTCCTGCAGGA
GGCCGTCATCGTCATCAAGGTCAGACCCGACCTGATCTATGTGCCCTGTG
TGTCCTTGTCCTGTCTATTGTGGTGGCATCAAGTTGATACCGGTAAACGT
CTGTGTCCTTGTTTGGCTGGTGTTGCTGTGGCGTGAAGGTGACCTAACCT
CTGTCTCCTGTTTTTGTACCAGCAAGTGCCCTTGCCTTGCCTGTCTCTTG
TTGGTAGTTTTGCTCCGCGCCCTCTCTTGTATTCTCTTGTATTTGTCTTT
GCTCTTTTCCCGCCAGAAGACAGGGTCAGCGTGTTGGTCTCGTATTAGCA
TCGAGGGGGTTCGTGGACTGAAACGACCCCCCCCCCCCCTCCATTTGCTT
GCTGTTCCATCGCTGGCCAATCAGGACATCTTCCGCAAGTACCCCAACAG
ATACGAGAGCATCATCTCCGCCCTCTGCGAGAACCTGGACACGCTGGATG
AGCCCGAGGCAAAGGTAAGCGTCACGCCCCCCCCCGTGCCTTCGTTTCAC
TGGTGGGGGGTTAGGTTGAAGAACTTCTCCCAGGGGCTTTGTTGTCTAGA
AGGTGATGCTGCTTCTGCAGCAGCTAACGCAACGTAGGTCGTCCAAAGTT
ATCTGGACTGTTTGTGGAGGCGTTCATCGACAATTTTATTGGTCGCTGCC
GACGCGAGCGAGCGGACTTACTACAGAATTTTTTTGTGCTCCCTTTCAGA
GATGCGAATGCTTTCGGTGTCCCCCCCCCCCCCCCCCCAAAAAACGCCCT
GCGTTTTTGACCTTTGGTTTGTCGTCTGCCGAAAACGCCCCAACCATGGC
GGCCAACCTGTTGCGATTCGCGTCTTCGCACGCGCTCTCTCAACACACAC
ATGCACACACACACACACACACACACACACACACTCACACACACTTGACC
ACAGGCTAGCATCATCTGGATCATCGGGGAGTACGCGGAGCGCATCGACA
ACGCCGACGAGCAGCTGGAGCACTTCTTGGAGACGTTCGAGGAGGAGTCG
GCCGAGGTGCAGCTCCAGCTCCTCACGGCCACCGTCAAGCTCTTCCTCAA
GCAGCCAGAGGACACGCAGGTGTGTGGGTGTGGGTGTACACATGTTGTGC
GAATGGGTGTACGGTGTGCAGTAGATAAGAGGAGTGTGATGGGGGGATTT
TTTTTGGCATCGGCCGTCTTCTGGCCGGCTGACCGGTGAAACGTGTGTGT
GTGTCTTTGTGTCTTTGTGTCTGTCTCTATGATAGGCACATGGCCTCCTG
ATGAACGTTTGTGTGTGTGCGTGTGTGTTCATATCTTCCGTAATTGGCGT
CCACCAGCTCACAAATGAAAACGTCATGCATGTGTGTGCATGTGCACGTA
TGACTGTTTTGTGATTGTTGCATCAGTGTTAGCACTTGTTAGGCGTGCGG
TCTAACGAGAGAGACCGACCTTTGTGTCTTGGGGGTGGATTGGGTACGTA
TGGGGTGGGACTAGCTTGACAGGTGAAAACTACAGTGGCCTCGGTCAAGT
GGTCCTTCAAACAGCCAGAGAAACGCTCGGGGCGTGCGTGTCTGTGTGTG
TGTTGTGGATGTTTAGGTAGACGTTGTTCCCACACGTCAGTTGCGAGTAC
TACTTTTGTCGTCATTTTCCTTGTTGCTCCTGTATCGCTGGTTCCACAAA
AGAGGGTGGTACATGGTCAAGCGGGCCATTCTGTAGCCAACGCCCTCAGG
CGCAGCCTACCTCCTACGCCCATCGCCTGTCCTGATACTTGCTCTAAACG
CCCTCCCCCCCCCAACCCCTTTTCGCTGTTTTTTTGCCACGAGTAGGACA
TGGTCCAGAGAGTCCTTCAACTGGCCACCGAGGAGAGCGACGACCCTGAC
CTGAGAGACCGCGGGTTCGTCTACTGGCGGCTGCTGTCGACCAACCCCGA
GGCTGCCAAGGCCGTCGTGCTCTCCGAGAAGCCCAACATCGCCGACGACA
CCTTCACGCTCGAGCCGGCCGTCCTCGACATGCTTATCGGCCAGGTGAGC
GGACGGACAAGCCGTTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14223:540..3357+

>mRNA_E-fasciculatus_F_contig14223.3088.1 ID=mRNA_E-fasciculatus_F_contig14223.3088.1|Name=mRNA_E-fasciculatus_F_contig14223.3088.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1524bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14223:540..3357+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGTGTTCTTCTGCAAGTACAACGACCCGATCTACGTGAAAATGGAGAA
GCTTGAGACAATCATCCGTCTCGTGAACGACCGCAACATCGACCAGAAGG
TGTTCTTCTGCAAGTACAACGACCCGATCTACGTGAAAATGGAGAAGCTT
GAGACAATCATCCGTCTCGTGAACGACCGCAACATCGACCAGCAGGTGCT
GCTGGAGCTTAAGGAGTACGCCCAGGAGGTGGACGTGGAGTTCGTGCGGA
AGGCCGTGAGGGCGATCGGGCGGTGCGCCATCAAGCTGGAGCGCGCGGCG
GAGCGGTGCATCAACGTGCTGCTGGAGCTGATCCAGACCAAGGTCAACTA
CGTCCTGCAGGAGGCCGTCATCGTCATCAAGCAGGTGCTGCTGGAGCTTA
AGGAGTACGCCCAGGAGGTGGACGTGGAGTTCGTGCGGAAGGCCGTGAGG
GCGATCGGGCGGTGCGCCATCAAGCTGGAGCGCGCGGCGGAGCGGTGCAT
CAACGTGCTGCTGGAGCTGATCCAGACCAAGGTCAACTACGTCCTGCAGG
AGGCCGTCATCGTCATCAAGGACATCTTCCGCAAGTACCCCAACAGATAC
GAGAGCATCATCTCCGCCCTCTGCGAGAACCTGGACACGCTGGATGAGCC
CGAGGCAAAGGACATCTTCCGCAAGTACCCCAACAGATACGAGAGCATCA
TCTCCGCCCTCTGCGAGAACCTGGACACGCTGGATGAGCCCGAGGCAAAG
GCTAGCATCATCTGGATCATCGGGGAGTACGCGGAGCGCATCGACAACGC
CGACGAGCAGCTGGAGCACTTCTTGGAGACGTTCGAGGAGGAGTCGGCCG
AGGTGCAGCTCCAGCTCCTCACGGCCACCGTCAAGCTCTTCCTCAAGCAG
CCAGAGGACACGCAGGCTAGCATCATCTGGATCATCGGGGAGTACGCGGA
GCGCATCGACAACGCCGACGAGCAGCTGGAGCACTTCTTGGAGACGTTCG
AGGAGGAGTCGGCCGAGGTGCAGCTCCAGCTCCTCACGGCCACCGTCAAG
CTCTTCCTCAAGCAGCCAGAGGACACGCAGGACATGGTCCAGAGAGTCCT
TCAACTGGCCACCGAGGAGAGCGACGACCCTGACCTGAGAGACCGCGGGT
TCGTCTACTGGCGGCTGCTGTCGACCAACCCCGAGGCTGCCAAGGCCGTC
GTGCTCTCCGAGAAGCCCAACATCGCCGACGACACCTTCACGCTCGAGCC
GGCCGTCCTCGACATGCTTATCGGCCAGGTGAGCGGACGGACAAGCCGTT
GAGACATGGTCCAGAGAGTCCTTCAACTGGCCACCGAGGAGAGCGACGAC
CCTGACCTGAGAGACCGCGGGTTCGTCTACTGGCGGCTGCTGTCGACCAA
CCCCGAGGCTGCCAAGGCCGTCGTGCTCTCCGAGAAGCCCAACATCGCCG
ACGACACCTTCACGCTCGAGCCGGCCGTCCTCGACATGCTTATCGGCCAG
GTGAGCGGACGGACAAGCCGTTGA
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