mRNA_E-fasciculatus_F_contig14222.3087.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14222.3087.1
Unique NamemRNA_E-fasciculatus_F_contig14222.3087.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14222.3087.1 vs. uniprot
Match: A0A6H5JRU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 5.250e-20
Identity = 59/99 (59.60%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:    1 RRRPSGEDGGSNGSCSVSPAGMEFETGDMAVAIKTGELDMSESEEQQHVSPHDTEARGEEHASSQDGDVVSELGNAN-----QERHDEAEEGTPGMDDG 282
            RR PSG++ GSNGSCS+S  GME  T +MAVA+KT E DMS+SEEQQ +S HD +A G EH SS+D DV SE+GNA+     QER  EAE  T G+D G
Sbjct:  177 RRIPSGDNSGSNGSCSMSSTGMEVATSNMAVAVKTSESDMSDSEEQQKLSQHDVKATGGEHESSRDDDVTSEVGNADFRSADQERQKEAE-ATLGIDGG 274
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BLAST of mRNA_E-fasciculatus_F_contig14222.3087.1 vs. uniprot
Match: A0A6H5KPJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPJ3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.150e-10
Identity = 49/103 (47.57%), Postives = 57/103 (55.34%), Query Frame = 1 
Query:    1 RRRPSGEDGGSNGSCSVSPAGMEFETGDMAVAIKTGELDMSESEEQQHV------------SPHDTEARGEEHASSQDGDVVSELGNANQERHDEAEEGTPGM 273
            RR PSG   G+ GS S S +G+E E G +   +KT E DMSE                   +P DTE  GEEH SS DG +VSE GNA+ ERH EAE  TPGM
Sbjct:   67 RRTPSGYKSGNKGSGSTSCSGVEAENGGVTATVKTWESDMSEXXXXXXXXXXXXXXXXXEDTPQDTEDIGEEHESSHDGGLVSESGNADHERHGEAEV-TPGM 168
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14222.3087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRU2_9PHAE5.250e-2059.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPJ3_9PHAE2.150e-1047.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14222contigE-fasciculatus_F_contig14222:47..3289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size553
Cds size552
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927912.2197897-CDS-E-fasciculatus_F_contig14222:46..1121622927912.2197897-CDS-E-fasciculatus_F_contig14222:46..112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14222 47..112 -
1695995748.9673703-CDS-E-fasciculatus_F_contig14222:46..1121695995748.9673703-CDS-E-fasciculatus_F_contig14222:46..112Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14222 47..112 -
1622927912.236679-CDS-E-fasciculatus_F_contig14222:920..9431622927912.236679-CDS-E-fasciculatus_F_contig14222:920..943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14222 921..943 -
1695995748.9843318-CDS-E-fasciculatus_F_contig14222:920..9431695995748.9843318-CDS-E-fasciculatus_F_contig14222:920..943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14222 921..943 -
1622927912.3380291-CDS-E-fasciculatus_F_contig14222:1396..14841622927912.3380291-CDS-E-fasciculatus_F_contig14222:1396..1484Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14222 1397..1484 -
1695995749.0025055-CDS-E-fasciculatus_F_contig14222:1396..14841695995749.0025055-CDS-E-fasciculatus_F_contig14222:1396..1484Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14222 1397..1484 -
1622927912.3518708-CDS-E-fasciculatus_F_contig14222:1991..21111622927912.3518708-CDS-E-fasciculatus_F_contig14222:1991..2111Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14222 1992..2111 -
1695995749.0151796-CDS-E-fasciculatus_F_contig14222:1991..21111695995749.0151796-CDS-E-fasciculatus_F_contig14222:1991..2111Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14222 1992..2111 -
1622927912.36494-CDS-E-fasciculatus_F_contig14222:2638..27911622927912.36494-CDS-E-fasciculatus_F_contig14222:2638..2791Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14222 2639..2791 -
1695995749.0253148-CDS-E-fasciculatus_F_contig14222:2638..27911695995749.0253148-CDS-E-fasciculatus_F_contig14222:2638..2791Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14222 2639..2791 -
1622927912.3801148-CDS-E-fasciculatus_F_contig14222:2989..30481622927912.3801148-CDS-E-fasciculatus_F_contig14222:2989..3048Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14222 2990..3048 -
1695995749.0365694-CDS-E-fasciculatus_F_contig14222:2989..30481695995749.0365694-CDS-E-fasciculatus_F_contig14222:2989..3048Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14222 2990..3048 -
1622927912.3910487-CDS-E-fasciculatus_F_contig14222:3246..32891622927912.3910487-CDS-E-fasciculatus_F_contig14222:3246..3289Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14222 3247..3289 -
1695995749.0577984-CDS-E-fasciculatus_F_contig14222:3246..32891695995749.0577984-CDS-E-fasciculatus_F_contig14222:3246..3289Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14222 3247..3289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14222.3087.1prot_E-fasciculatus_F_contig14222.3087.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14222 47..3289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14222.3087.1

>prot_E-fasciculatus_F_contig14222.3087.1 ID=prot_E-fasciculatus_F_contig14222.3087.1|Name=mRNA_E-fasciculatus_F_contig14222.3087.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=184bp
RRRPSGEDGGSNGSCSVSPAGMEFETGDMAVAIKTGELDMSESEEQQHVS
PHDTEARGEEHASSQDGDVVSELGNANQERHDEAEEGTPGMDDGEEKEEE
EDHGEREEQEAGDEEDEKHEENEENANASSEVQPSPPAGTVYGRLAAGDP
TTLKEIAAVSAKTRCYLLFQTTSSMVIFLRQSR*
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mRNA from alignment at E-fasciculatus_F_contig14222:47..3289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14222.3087.1 ID=mRNA_E-fasciculatus_F_contig14222.3087.1|Name=mRNA_E-fasciculatus_F_contig14222.3087.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3243bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14222:47..3289- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAAGACGGCCGAGTGGTGAGGATGGCGGCAGCAACGGCTCATGTAAGAG
TGGGGACGTGGATATACGAACGCGAGGGTAGGCAAGAAAATATTTGACCC
TGGTGGTGAGCTTCAGCCCGTGCTCTATGCTTTTCATCTGGTTCTATCGC
ACTCCCTTTACATGCCCTCCTTGTGGTACCTCCACCACATCTGACACCAC
GTTGCCTTGCTTTGTTGCAATCCGTGTCATGCTGCCCACAGGCTCGGTGT
CACCCGCTGGCATGGAATTCGAGACTGGCGATATGGCTGTAGCAATCAAG
GTGAGCCTTAGGTGTCAGTGCGTAGCATGGGCTGTTTTGGCTGCATGTGG
TATATTAAAGTCAGCTTTCCCCCCGCACTACCGCTGCAAGAGGAATCAGG
ATACAACGCTCGAATATCTCCACTAACCTGCTGCTACGCATACCGCCTTG
TTTCATCGTGTGAATCCCGTTCTCGCCATTCGGATTTCCGTCGAGCAGAC
CGGAGAGTTAGACATGTCCGAAAGTGAAGAGCAACAACACGTCTCACCAC
ATGACACCGAAGCTAGAGGAGAGGAGCATGCGTCATCACAAGACGGCGAT
GTGGTTTCAGAGCTTGGAAACGCCAATCAGGAGAGACACGATGAAGCCGA
GGTGGGAACCCAGGGTGTCTGGTTGCGAGCGGTGTTGTTTGTTTGGGTTC
TGGCCAGAATTGAGCTGGTTGTCTTGACGACCCGCTTGGCTGCTCAATAT
CTCCACGCAGTGCTTGGAAAATGATGAGCTAGGTTCGATGTTCATAGTAC
TGACTTGACTTGCAAGTTCGTTCAAGCTGGTTTGGCGGAAGACGTGCTCG
ATACTATCAGCGGAAATCAGAAGGTCAATATTTGTTTTTGATGTAAGTCG
TTAAAGCTCTTTGTGGCTCTTTCGCCACCCATCTGTCATGGCGCAGGAGT
TACTGATCCAACCCGCCACTGGTCGACCAGCCTAGGCTGATGAGAGGCTA
CGCGGAGCCGGAAAAGCGCGTTGTTTCCCTTGGGTGCTTCGAAACTCTCC
AACCACACCACGAACTAGAATGAAAGCTCTCGCTCCCCCTTTAAAGCCAG
CCTACAGTGTTGTGGCACGTTGTTTAATCGCCTTGTTACCACATAATGCA
GTGGCCGTGTTTTGTTGGATAACGGTAGGAGGGTACTCCCGGGATGGATG
ATGGAGAAGAGAAGGAAGAGGAGGAGGATCACGGCGAGAGAGAGGAGCAG
GAGGCGGGCGACGAGGAGGACGAGAAACACGAAGAAAACGAAGAAAACGT
AGGCAGCTGGGTCCATGTGTACGTGTAGAGTAGGCGTATTGTGATGCCTA
TCGCACCGTGCTGCTAGGCTGTTGAGAGAGCTTGCATCTTGCTCATCTGC
CGAAGCTCGATGGACCTTTGCAACATCATCGGGTGGACCTGCGTCGGTAT
TGGCCGCTTTTCTTGACTCAATGATGGCTACGTTTGTGTAGCGGGGTAGA
TCCATCCCGTTCTGGCTAGCACATGCCATGGGGAAAACACCATCAGTCGC
TTGGAAGAATCTTTTGTTCTGTCTGAGGATCGTCTTCGTACCCAGATCCA
CGTCTTGTTTGCCCGTTCCCTACCAAGAACCGGAGTTGTCATATCCACCG
TTTGGTGGCAAGACTGCGGATGACTGGACTGTAGTTGATTGTCAGGTTGC
TTGAATTGTTTTGTAGCTCCAGAGTCATATTTTCGGCATGGTTTCGCGGC
GTCAACGAGACCCACCATTTGCAGTCGACGGATGACTCTCTGCAGGCAAG
GCGAGGCAAACGCAAGCTCGGAGGTGCAGCCAAGCCCCCCCGCCGGTACA
GTGTACGGAAGGCTGGCAGCCGGCGACCCAACTACGCTGAAAGGTGACCA
GGAGTGCGAGATGAAGATTCTCGAGTATAGTGTCCGCGCCTGATTGAGGG
GCGGGTAGTTGTGATTCTATTGGATTTTATTCACGTCTCGGGGATACATC
GTACAGCCCATTTCCGTCCCCCGGCCTACCGCTCATCGTACGGACACAAG
AGGTGCGTGTGCCGACTGATGGTGGAAGGTCGCGTTGAGCGGATGAAGCC
TGACATAGCGGAAGCATGTTCCCGATGAAAGTACCTTATATATGAAGTCT
ATTGCTGCGACTACCAATTGCTGTCCGTGCTGGCCACAACTGCTAGATGT
TTGGAGCCCCGATAAGCACGTACATACAATTTGCAGGTTTGTCGAGAGAC
AGCAGTTCCGGGCATGAGCATAGCTGACGTTGACCCTTCTATCATCGGTT
TTCCCTGTTGTTCCATGACCTCGTTCGTGTGGACGATGGGTGGCAGAGAT
AGCGGCAGTGAGTGCGAAGGTGAGAGCAGGGTCGGGAAAGTACTATGAGG
GTTTTGGGTGACGGACGTGGGAATGAACGTCGTCGTTGTTGTTTTCAAAA
CTGGTTCTGTTCTCTGCTCAGCCCCATCGGATATATGTTCTGGTCGACGG
AGGCGAACGCCTTGCGTGGTCCCAGGCAATCTACCGAAAACGGGTACCAT
GTGTACCATGAAAAGTCCCAAGACTCCAGTAATATCAACAGTACTCCATA
AAAATACAAGCACAGAATGCCCTTAAACAGTCAAACTTCGCAGCAGGTGA
CATGCTGGACAAAGGAGATGTGTAGTCGTTTTATCCGACCGCTGCCATTG
ACACTCGAGACCGACAACGAAAAACGTTCAATGATGCCAACAATCTCGCA
CGATTCTATGCTTCTCCCTCCACTAGGCCGGGGTATATTTACCGCCGTAT
CTTGCAATTTTCACCATGCCACTTGCCGACATATACCTACCAATGTGTGT
TGTAGGAGCTTCGACACCAACGAACAGGCGATACCTGCCCATTGGAACAC
CCCACGAACAAGACCTACTGTACCCCACATCCCTACCAACTATGCCCGTG
TATTGAGGTTTTCGCCGGCCAGACACTCTCTCCCGCTGTACGTCGACTCT
TGAAAAGGCCTTTGTGTGTGCGCAAAATAGGCTAGGCACGTGTGCGACAT
ACGTTGCTATTGAAACTGTAGGGAGAGTTGATGCTCTCTGTGTTGTTCCG
TGCATGACCCCTAGCCGGAGTATGAACAACCTTCGAAACGATGTTGCCTT
TCACCATGTATGCCATTCTGCACACAGACGCGATGTTATCTTCTGTTTCA
GACGACATCGAGCATGGTGATATTCCTGAGGCAGTCGAGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14222:47..3289-

>mRNA_E-fasciculatus_F_contig14222.3087.1 ID=mRNA_E-fasciculatus_F_contig14222.3087.1|Name=mRNA_E-fasciculatus_F_contig14222.3087.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1104bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14222:47..3289- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGAAGACGGCCGAGTGGTGAGGATGGCGGCAGCAACGGCTCATAGAAGAC
GGCCGAGTGGTGAGGATGGCGGCAGCAACGGCTCATGCTCGGTGTCACCC
GCTGGCATGGAATTCGAGACTGGCGATATGGCTGTAGCAATCAAGGCTCG
GTGTCACCCGCTGGCATGGAATTCGAGACTGGCGATATGGCTGTAGCAAT
CAAGACCGGAGAGTTAGACATGTCCGAAAGTGAAGAGCAACAACACGTCT
CACCACATGACACCGAAGCTAGAGGAGAGGAGCATGCGTCATCACAAGAC
GGCGATGTGGTTTCAGAGCTTGGAAACGCCAATCAGGAGAGACACGATGA
AGCCGAGACCGGAGAGTTAGACATGTCCGAAAGTGAAGAGCAACAACACG
TCTCACCACATGACACCGAAGCTAGAGGAGAGGAGCATGCGTCATCACAA
GACGGCGATGTGGTTTCAGAGCTTGGAAACGCCAATCAGGAGAGACACGA
TGAAGCCGAGGAGGGTACTCCCGGGATGGATGATGGAGAAGAGAAGGAAG
AGGAGGAGGATCACGGCGAGAGAGAGGAGCAGGAGGCGGGCGACGAGGAG
GACGAGAAACACGAAGAAAACGAAGAAAACGAGGGTACTCCCGGGATGGA
TGATGGAGAAGAGAAGGAAGAGGAGGAGGATCACGGCGAGAGAGAGGAGC
AGGAGGCGGGCGACGAGGAGGACGAGAAACACGAAGAAAACGAAGAAAAC
GCAAACGCAAGCTCGGAGGTGCAGCCAAGCCCCCCCGCCGGTACAGTGTA
CGGAAGGCTGGCAGCCGGCGACCCAACTACGCTGAAAGGCAAACGCAAGC
TCGGAGGTGCAGCCAAGCCCCCCCGCCGGTACAGTGTACGGAAGGCTGGC
AGCCGGCGACCCAACTACGCTGAAAGAGATAGCGGCAGTGAGTGCGAAGA
GATAGCGGCAGTGAGTGCGAAGACGCGATGTTATCTTCTGTTTCAGACGA
CATCGAGCATGGTGATATTCCTGAGGCAGTCGAGGTGAACGCGATGTTAT
CTTCTGTTTCAGACGACATCGAGCATGGTGATATTCCTGAGGCAGTCGAG
GTGA
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