mRNA_E-fasciculatus_F_contig14219.3085.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14219.3085.1
Unique NamemRNA_E-fasciculatus_F_contig14219.3085.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14219.3085.1 vs. uniprot
Match: A0A6H5KW87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW87_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 1.040e-105
Identity = 191/203 (94.09%), Postives = 193/203 (95.07%), Query Frame = 1 
Query:    1 SIKVAHEKIRHLEAESSGLLAAAEFRENEACSMQERASLAXXXXXXXXXXXASALEQQLSDSGVSQSKKLAELAGATQELKRTKAALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPPPGSSPGESPWLGEETVGSLSGG 609
            SIKVAHEKIRHLEAESS LLAAAE RE EACSMQE+A   XXXXXXXXXXXASALEQ LSDSGVSQSKKLAELA  TQELKRTKAALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPP GSSPG+SPWLGEETVGSLSGG
Sbjct:  109 SIKVAHEKIRHLEAESSDLLAAAEVREKEACSMQEKAXXXXXXXXXXXXXXASALEQ-LSDSGVSQSKKLAELADVTQELKRTKAALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPPLGSSPGDSPWLGEETVGSLSGG 310
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BLAST of mRNA_E-fasciculatus_F_contig14219.3085.1 vs. uniprot
Match: D8LU91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU91_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 8.880e-104
Identity = 188/203 (92.61%), Postives = 190/203 (93.60%), Query Frame = 1 
Query:    1 SIKVAHEKIRHLEAESSGLLAAAEFRENEACSMQERASLAXXXXXXXXXXXASALEQQLSDSGVSQSKKLAELAGATQELKRTKAALERAERLVFDQRREADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCASFCSCFRGKPAYRRVASPAPFAPPPGSSPGESPWLGEETVGSLSGG 609
            SIKVA EKIRHLEAESSGLLAAAEFRE EACSMQE+A   XXXXXXXXXXXASALEQ LSDSGVSQSKKLAELA  TQELK TKAALERAERLVFDQRREADERQ DEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCA FCSCFRGKPAYRRVASPAPFAPPPGSSPG+ PWLGEETV SLSGG
Sbjct:   30 SIKVAQEKIRHLEAESSGLLAAAEFREKEACSMQEKAXXXXXXXXXXXXXXASALEQ-LSDSGVSQSKKLAELADVTQELKLTKAALERAERLVFDQRREADERQRDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFGRSSTFCALFCSCFRGKPAYRRVASPAPFAPPPGSSPGDIPWLGEETVASLSGG 231
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14219.3085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW87_9PHAE1.040e-10594.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LU91_ECTSI8.880e-10492.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14219contigE-fasciculatus_F_contig14219:280..3024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size627
Cds size627
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14219.3085.1prot_E-fasciculatus_F_contig14219.3085.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14219 280..3024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927911.9202218-CDS-E-fasciculatus_F_contig14219:279..4501622927911.9202218-CDS-E-fasciculatus_F_contig14219:279..450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14219 280..450 +
1695995748.7845197-CDS-E-fasciculatus_F_contig14219:279..4501695995748.7845197-CDS-E-fasciculatus_F_contig14219:279..450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14219 280..450 +
1622927911.938083-CDS-E-fasciculatus_F_contig14219:1544..16741622927911.938083-CDS-E-fasciculatus_F_contig14219:1544..1674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14219 1545..1674 +
1695995748.79976-CDS-E-fasciculatus_F_contig14219:1544..16741695995748.79976-CDS-E-fasciculatus_F_contig14219:1544..1674Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14219 1545..1674 +
1622927911.9533548-CDS-E-fasciculatus_F_contig14219:2008..21001622927911.9533548-CDS-E-fasciculatus_F_contig14219:2008..2100Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14219 2009..2100 +
1695995748.8085299-CDS-E-fasciculatus_F_contig14219:2008..21001695995748.8085299-CDS-E-fasciculatus_F_contig14219:2008..2100Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14219 2009..2100 +
1622927911.97214-CDS-E-fasciculatus_F_contig14219:2790..30241622927911.97214-CDS-E-fasciculatus_F_contig14219:2790..3024Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14219 2791..3024 +
1695995748.8194306-CDS-E-fasciculatus_F_contig14219:2790..30241695995748.8194306-CDS-E-fasciculatus_F_contig14219:2790..3024Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14219 2791..3024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14219.3085.1

>prot_E-fasciculatus_F_contig14219.3085.1 ID=prot_E-fasciculatus_F_contig14219.3085.1|Name=mRNA_E-fasciculatus_F_contig14219.3085.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=209bp
SIKVAHEKIRHLEAESSGLLAAAEFRENEACSMQERASLAQERALAHEKA
LASALEQQLSDSGVSQSKKLAELAGATQELKRTKAALERAERLVFDQRRE
ADERQCDEDRRRAETEALRDKLTRVERKNTELMAKQAAGRLAKRMRGNFG
RSSTFCASFCSCFRGKPAYRRVASPAPFAPPPGSSPGESPWLGEETVGSL
SGGGGRGL*
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mRNA from alignment at E-fasciculatus_F_contig14219:280..3024+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14219.3085.1 ID=mRNA_E-fasciculatus_F_contig14219.3085.1|Name=mRNA_E-fasciculatus_F_contig14219.3085.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2745bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14219:280..3024+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCATCAAAGTGGCCCACGAAAAAATAAGACACCTGGAGGCGGAAAGCTC
GGGGCTTCTGGCGGCAGCGGAGTTCAGGGAGAACGAGGCGTGCTCCATGC
AGGAGAGGGCCAGCCTTGCGCAGGAGCGGGCTCTCGCGCACGAAAAGGCT
TTGGCGAGCGCCTTGGAGCAGGTGTGTCCAAGTACCTCCTAAAGCTTCGC
TTTGTTGGTTGGTGAATTTCATTTCCTAGTTCAGTGGTGGAACTACAGTA
GTCGGTTTTGATGAGTTATACGCTTTCAGGAATCGACGTTTTTCGTCATA
TTTGTTTTTTGAGTGTCGGCCAACGACTATCGCCGGATGAAGACAGTATT
TTGTCTCTCTGATGACAAGCTCTTGGATGGCCCAACGAAGTTACCGGTAA
ACGTTGGCAGTAGTCGACCCTGCAGAAAGAAACGTTCCCACCCTGTGCTG
TAGTAGATCACGTGTTACTATTATAGGAGAGATGTAATGAGGAAGAGAGT
CAGCAACGTCTTCTCTATCGTCGCAAACACAACTAAGAAGCAGATGTCGG
TGTATGGCCACCGATTTCCTTGGTGTTTTTTGCCAAGGCTGTGGCGCCTG
TGCGATCGACCAACAACCTATCGCACTTTAGATAGGACAGCAGATGCCCT
TCGTCTACGGCACCAAGCAAAAACACTTATCCTCGACAGGTATTATAGCT
AGCCTCATAACTTTGTTGGGGGCGCTCTCCCCCCCCCCCCCCCCCCCCCC
CCCTGTCCTCCAAATCGTGTTTTCTTCTGGGACCCAGGAGCTCGAACAAT
CCTTCCCCGCGAGTTTCTCGTTGTGTGACGAAAGAAAATCTTCTCCCCAT
ACATGCACTGAAAGCGTCGCGTGCCCTCGGCGTTGTCTTGCCATGCCACG
GTGTGACGTGATGTGATGTGATGTGATGCGACGTGTGTTCCGGTTGCGTT
TCTATTAGCTAAGGTGACGTTCCCGATACATACCCCCCCGCGGGTTATAG
TCCGCCGGGTTTTTTCTTCACCTGGTCCCCCACTACTTCTTTTTGCTGCC
GACGTTGATATACTGCCTTGAGTTTAATTTTCGTTATGGAGTAACTGAAG
AAATTTCAGGTTCTGTTTGCACCTGCCCCTCCTCCTTTCTTTCCTCTCAC
GGCGTCACAGCTGTGAACAAAGTATATCGTTTGGTTGCGGTACTGTCCCC
CCTCCCCCCCCCTTCTCTCACGCTCTCTCCTCTGCTGCTGCTGCTGCTTC
CCCCTCCGGCGAGAGCAGCTGTCAGATTCCGGGGTTTCGCAATCGAAGAA
GCTGGCTGAGCTGGCAGGCGCGACGCAAGAGCTCAAGCGTACGAAGGCGG
CGTTGGAGCGAGCCGAGAGGCTAGTGTTTGACCAACGACGGGAAGGTGTG
TACTGCACGGCGGTACGGTAGGGTACGGTACGGTAACGGCCGCTCCGTAG
AGAAGCTACAGGGACCGCCGGCGGTTTAAACATCGTGCGACCCGCACCCC
CCTGCCTTACGGGAAGCCTGCCTGCCTGCCTCTGGCCTTCCCTGACGGCT
TGTTCGTCTCGTGTACGGCAGTGCGATTTGTTGTGGGTATGAACCATGTT
GTTGCTATCGTTGATTTGATCCCGATTTCATCTGCTGTCCAACGTGCTGT
CCGTCAAAACTGTCGGTGTCGGGCACTCTTCCGCGATATCGCAACCATCT
CTCTGTCTGACGGCGACCTGGCGGCGCAGCGGACGAGAGGCAGTGCGACG
AAGACCGCCGGCGAGCGGAGACGGAGGCGCTGAGAGATAAGCTCACCCGG
GTGGAGCGGAAAAACACAGAGGTATCTACATTACCTAAAGTAAAATTTAT
CAACAGCGACAAATCACGACGCACGCGTCAGCCTTCCATGAGGTGCTCCA
AAATCCGTAGGGGTGCGCACATGGCCTATTTCGTGCACACACGCCGTTTT
TTTTTGTGGCAAATACCACGTGTAGAGGTGTCGGTTGGCACCGAGGTGCG
TACACCACCAAGCTCAGCACAGCAAAGCAACATGACGGAGACCGCACAAA
AAGAAAGCGTGGAAGTCAAGTTTAAATCCGTCATGTTGGGTGTGCCTTCG
CCGGCGGCGACTCTCAATAGACCGCGGCAGCAGATGCCGCGCTGCGTGTT
GTACACGCCCGCTCCTCCACCCATGTCCTTCCTCCACCTCGTTATCCTCC
TTCCCTCCCCCTACTGCACATACCCGGGGGGGGGGGGGGGGGCTACCTGC
GTTCCCCCTTGCCCGTGCGTACCCACGTCGGCCGCTGTATTGTTTTTTTT
CGTGATCGGTTTGGTGTGTCGCATGTGCTTGCTACGTCGCAGCTGGTTGA
TGGACTCGTTTTGCAGACACACAAGAGGCTTGCTCCTTTTCGCACCTGCG
AAGTTTTGTAATCGTGTTCCGTATAACAACGCATGCTCTTGCTTAATTTC
CTGCCTACAACCTGGGGCTTCCTTCCGCCGACGCCGCCGCCGTAAAAACA
AAACACAAAAGCTGATGGCGAAGCAGGCGGCCGGGCGGCTGGCCAAGCGA
ATGCGCGGAAATTTTGGGAGGAGCAGCACGTTCTGCGCGTCGTTCTGCAG
CTGCTTCCGGGGGAAGCCGGCCTACCGGCGGGTGGCATCGCCCGCGCCGT
TCGCTCCCCCTCCCGGCTCGTCTCCGGGAGAGAGCCCGTGGCTGGGAGAG
GAAACGGTCGGCTCCCTCAGCGGTGGCGGCGGCAGGGGGTTGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14219:280..3024+

>mRNA_E-fasciculatus_F_contig14219.3085.1 ID=mRNA_E-fasciculatus_F_contig14219.3085.1|Name=mRNA_E-fasciculatus_F_contig14219.3085.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1254bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14219:280..3024+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCATCAAAGTGGCCCACGAAAAAATAAGACACCTGGAGGCGGAAAGCTC
GGGGCTTCTGGCGGCAGCGGAGTTCAGGGAGAACGAGGCGTGCTCCATGC
AGGAGAGGGCCAGCCTTGCGCAGGAGCGGGCTCTCGCGCACGAAAAGGCT
TTGGCGAGCGCCTTGGAGCAGAGCATCAAAGTGGCCCACGAAAAAATAAG
ACACCTGGAGGCGGAAAGCTCGGGGCTTCTGGCGGCAGCGGAGTTCAGGG
AGAACGAGGCGTGCTCCATGCAGGAGAGGGCCAGCCTTGCGCAGGAGCGG
GCTCTCGCGCACGAAAAGGCTTTGGCGAGCGCCTTGGAGCAGCAGCTGTC
AGATTCCGGGGTTTCGCAATCGAAGAAGCTGGCTGAGCTGGCAGGCGCGA
CGCAAGAGCTCAAGCGTACGAAGGCGGCGTTGGAGCGAGCCGAGAGGCTA
GTGTTTGACCAACGACGGGAAGCAGCTGTCAGATTCCGGGGTTTCGCAAT
CGAAGAAGCTGGCTGAGCTGGCAGGCGCGACGCAAGAGCTCAAGCGTACG
AAGGCGGCGTTGGAGCGAGCCGAGAGGCTAGTGTTTGACCAACGACGGGA
AGCGGACGAGAGGCAGTGCGACGAAGACCGCCGGCGAGCGGAGACGGAGG
CGCTGAGAGATAAGCTCACCCGGGTGGAGCGGAAAAACACAGAGCGGACG
AGAGGCAGTGCGACGAAGACCGCCGGCGAGCGGAGACGGAGGCGCTGAGA
GATAAGCTCACCCGGGTGGAGCGGAAAAACACAGAGCTGATGGCGAAGCA
GGCGGCCGGGCGGCTGGCCAAGCGAATGCGCGGAAATTTTGGGAGGAGCA
GCACGTTCTGCGCGTCGTTCTGCAGCTGCTTCCGGGGGAAGCCGGCCTAC
CGGCGGGTGGCATCGCCCGCGCCGTTCGCTCCCCCTCCCGGCTCGTCTCC
GGGAGAGAGCCCGTGGCTGGGAGAGGAAACGGTCGGCTCCCTCAGCGGTG
GCGGCGGCAGGGGGTTGTAGCTGATGGCGAAGCAGGCGGCCGGGCGGCTG
GCCAAGCGAATGCGCGGAAATTTTGGGAGGAGCAGCACGTTCTGCGCGTC
GTTCTGCAGCTGCTTCCGGGGGAAGCCGGCCTACCGGCGGGTGGCATCGC
CCGCGCCGTTCGCTCCCCCTCCCGGCTCGTCTCCGGGAGAGAGCCCGTGG
CTGGGAGAGGAAACGGTCGGCTCCCTCAGCGGTGGCGGCGGCAGGGGGTT
GTAG
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