mRNA_E-fasciculatus_F_contig14218.3084.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: D7FMQ9_ECTSI (Aquarius intron-binding protein similar to aquarius n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ9_ECTSI) HSP 1 Score: 187 bits (475), Expect = 3.780e-53 Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 3
Query: 3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVCS 284
GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEV S
Sbjct: 1008 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVLS 1101
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A1Y1WSV3_9FUNG (Aquarius_N domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1WSV3_9FUNG) HSP 1 Score: 116 bits (290), Expect = 3.100e-28 Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 3
Query: 3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRD-PTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVCS 284
G +V+ LPKLNLQFLT HDYLLR+FNLFRLESAYEIR D+ DA++R P+ P R T F GWARMA PI SI +V+KPNLGEK PA+V +
Sbjct: 377 GNEVLPLPKLNLQFLTIHDYLLRNFNLFRLESAYEIRQDIEDAVKRLAPKLIFPER--TTEFTGWARMAIPIETFSIVDVEKPNLGEKKPAKVAA 469
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A1Y1YIH7_9FUNG (Pre-mRNA-splicing factor n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YIH7_9FUNG) HSP 1 Score: 116 bits (290), Expect = 3.340e-28 Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 3
Query: 3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRD-PTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEVCS 284
G +V+ LPKLNLQFLT HDYLLR+FNLFRLESAYEIR D+ DA++R P+ P R T F GWARMA PI SI +V+KPNLGEK PA+V +
Sbjct: 353 GNEVLPLPKLNLQFLTIHDYLLRNFNLFRLESAYEIRQDIEDAVKRLAPKLIFPER--TTEFTGWARMAIPIETFSIVDVEKPNLGEKKPAKVAA 445
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A7S3GMN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GMN5_9STRA) HSP 1 Score: 115 bits (289), Expect = 4.550e-28 Identity = 60/92 (65.22%), Postives = 67/92 (72.83%), Query Frame = 3
Query: 3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEV 278
G +V+ALPKLNLQFL+ HDYLLR+F LFRLESAYEIR DL DAI+R P+ GA F GWARMA PI VS+ EV KP LGE VP V
Sbjct: 552 GNEVLALPKLNLQFLSIHDYLLRNFTLFRLESAYEIRDDLTDAIKRMGPKAGLR--GAVNFGGWARMAVPIVSVSVDEVTKPKLGELVPRNV 641
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A7S0SBT5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SBT5_9CHLO) HSP 1 Score: 114 bits (286), Expect = 8.730e-28 Identity = 57/94 (60.64%), Postives = 71/94 (75.53%), Query Frame = 3
Query: 3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPIS--GVSITEVKKPNLGEKVPAEV 278
G +ALPKLNLQFLT HDYLLR+FNLFRLE+ YEIR D+ DA++R P RD G +F GWARMATP++ +++TEV+KPN+GE PA V
Sbjct: 218 GEGCLALPKLNLQFLTFHDYLLRNFNLFRLEATYEIRTDIADALQRMGPHRD-RETGEVKFSGWARMATPVAPGALAVTEVRKPNVGEAKPAAV 310
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A7S1T1J6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T1J6_9CHLO) HSP 1 Score: 107 bits (267), Expect = 9.470e-28 Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 3
Query: 3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEV 278
G +ALPKLNLQFLT+HDYLLR+FNLFRLE+ YEIR DL D + R R D G F GW+RMA P+ +I EVKKP++G+ PA V
Sbjct: 5 GDSALALPKLNLQFLTAHDYLLRNFNLFRLEATYEIREDLSDVLARVGARTDDD-SGKVNFTGWSRMAIPLHHFTIVEVKKPDVGQNKPAAV 95
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: L8HF13_ACACA (FHA domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HF13_ACACA) HSP 1 Score: 114 bits (286), Expect = 1.140e-27 Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = 3
Query: 3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEV 278
G +ALPKLNLQFLT +DYLLR+FNLFRLE+ Y IR D+ DA+RR NPRR P+ G T F GWARM+ PI IT V+ P +GEK PA V
Sbjct: 448 GEHCLALPKLNLQFLTFYDYLLRNFNLFRLEATYAIRADVEDAVRRMNPRRTPS--GQTAFNGWARMSLPIKNFRITAVRPPRIGEKQPAAV 537
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A0D2UDQ5_CAPO3 (Aquarius n=3 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UDQ5_CAPO3) HSP 1 Score: 114 bits (285), Expect = 1.590e-27 Identity = 58/92 (63.04%), Postives = 67/92 (72.83%), Query Frame = 3
Query: 3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEV 278
G +ALPKLNLQFLT HDYLLR+ LFRLESAYEIR D+ DA+RR PRRD G T F+GWARMA PIS S+ V KP+L E+ P+ V
Sbjct: 519 GEGCLALPKLNLQFLTIHDYLLRNMTLFRLESAYEIREDITDAVRRLAPRRDEN--GGTLFQGWARMALPISAFSVVSVGKPSLAERHPSSV 608
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A369SLI2_9METZ (Intron-binding protein aquarius n=2 Tax=Trichoplax TaxID=10227 RepID=A0A369SLI2_9METZ) HSP 1 Score: 112 bits (280), Expect = 7.510e-27 Identity = 58/92 (63.04%), Postives = 65/92 (70.65%), Query Frame = 3
Query: 3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEV 278
G +ALPKLNLQFLT HDYLLR+FNLFRLES YEIRGD+ DA+ R P T T+F GWARMA PI +I EV KPN+GE PA V
Sbjct: 467 GADCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRGDIEDAVSRMKPWL--TEDNMTQFSGWARMAQPIVAFTIIEVIKPNIGESRPARV 556
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Match: A0A5E4QWG6_9NEOP (Aquarius_N domain-containing protein n=2 Tax=Obtectomera TaxID=104431 RepID=A0A5E4QWG6_9NEOP) HSP 1 Score: 109 bits (273), Expect = 9.070e-27 Identity = 55/92 (59.78%), Postives = 65/92 (70.65%), Query Frame = 3
Query: 3 GGKVMALPKLNLQFLTSHDYLLRSFNLFRLESAYEIRGDLVDAIRRTNPRRDPTRGGATRFEGWARMATPISGVSITEVKKPNLGEKVPAEV 278
G +ALPKLNLQFLT HDYLLR+FNLFRLES YEIR D+ DA+ R P + G+ F GWARMA PI ++ EV KPN+GEK P+ V
Sbjct: 114 GENCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDIEDAVYRLAPWK--AEDGSVYFGGWARMAHPIQSFAVVEVAKPNIGEKAPSRV 203 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14218.3084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14218.3084.1 >prot_E-fasciculatus_F_contig14218.3084.1 ID=prot_E-fasciculatus_F_contig14218.3084.1|Name=mRNA_E-fasciculatus_F_contig14218.3084.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=77bp MAERSWLCPSSTCSSSQATTTCSGASTSSGSSPPTRSAETSWTPSAAPTPback to top mRNA from alignment at E-fasciculatus_F_contig14218:24..1239- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14218.3084.1 ID=mRNA_E-fasciculatus_F_contig14218.3084.1|Name=mRNA_E-fasciculatus_F_contig14218.3084.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1216bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14218:24..1239- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14218:24..1239- >mRNA_E-fasciculatus_F_contig14218.3084.1 ID=mRNA_E-fasciculatus_F_contig14218.3084.1|Name=mRNA_E-fasciculatus_F_contig14218.3084.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=462bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14218:24..1239- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |