mRNA_E-fasciculatus_F_contig1421.3077.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1421.3077.1
Unique NamemRNA_E-fasciculatus_F_contig1421.3077.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1421.3077.1 vs. uniprot
Match: D8LNR3_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR3_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 7.910e-68
Identity = 133/202 (65.84%), Postives = 139/202 (68.81%), Query Frame = 1 
Query:    1 MPDPEQREESLMETCTYARGAGGTATAGYQAXXXXXXXXXXXXXXXXXXXXXCPCEY--------PKASDSPPALVVLLEYIHARACGCPAALVALLEAAAAAGRTDMLLPVAIGSSKGQQPSRNFFSPPPAAAARVCIEATAGVPPEFLLPLAVKHNYLDCVRELLRLGANVEAVDEIGLTPLLVATRAGNVSAIGILIDL 582
            M DPE+REE LM TC YARGAGG  TAGYQA                     CPCE         PKASDSPPALVVLLEYIHAR  G         EAAAA   +DMLLPVAIGSSKGQQP RN+    P  AAR    A  GVPPEFLLPLAVK+NYL+CVRELLRLGANVEAVDEIGLTPLLVATRAGNVSAIG+LIDL
Sbjct:    1 MRDPEKREEELMATCAYARGAGGATTAGYQARAAAPGS--------------CPCESHCCHPNLSPKASDSPPALVVLLEYIHARTSGXXXXXXXXXEAAAAG--SDMLLPVAIGSSKGQQPGRNYL---PLPAARGATAAAGGVPPEFLLPLAVKNNYLECVRELLRLGANVEAVDEIGLTPLLVATRAGNVSAIGVLIDL 183
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BLAST of mRNA_E-fasciculatus_F_contig1421.3077.1 vs. uniprot
Match: A0A6H5L2S0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2S0_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 1.850e-62
Identity = 131/201 (65.17%), Postives = 137/201 (68.16%), Query Frame = 1 
Query:    1 MPDPEQREESLMETCTYARGAGGTATAGYQAXXXXXXXXXXXXXXXXXXXXXCPCEY-------PKASDSPPALVVLLEYIHARACGCPAALVALLEAAAAAGRTDMLLPVAIGSSKGQQPSRNFFSPPPAAAARVCIEATAGVPPEFLLPLAVKHNYLDCVRELLRLGANVEAVDEIGLTPLLVATRAGNVSAIGILIDL 582
            MP+PE+R    M TC +A  AGG  TAGYQA                     C CE        P+ASDSPPALVVLLEYIHAR  G PAALVALLEAAAA   +DMLLPV IGSSKGQQP  N+   P A  A V      GVPPEFLLPLAVKHNYLDCVRELL LGANVEAVDEIGLT LLVATRAGNVSAIGILIDL
Sbjct:    1 MPNPEKRGGKSMATCAHAHAAGGATTAGYQARAAAAAGS-------------CQCESHCHPNLSPEASDSPPALVVLLEYIHARTPGSPAALVALLEAAAAG--SDMLLPVVIGSSKGQQPVPNYLPMPAARGATVA----GGVPPEFLLPLAVKHNYLDCVRELLTLGANVEAVDEIGLTALLVATRAGNVSAIGILIDL 182
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1421.3077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNR3_ECTSI7.910e-6865.84Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L2S0_9PHAE1.850e-6265.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1421contigE-fasciculatus_F_contig1421:427..1008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score221.9
Seed ortholog evalue2.7e-55
Seed eggNOG ortholog2880.D8LNR3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_006150.1
Exons1
Model size582
Cds size582
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927911.1904058-CDS-E-fasciculatus_F_contig1421:426..10081622927911.1904058-CDS-E-fasciculatus_F_contig1421:426..1008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1421 427..1008 -
1695995748.333965-CDS-E-fasciculatus_F_contig1421:426..10081695995748.333965-CDS-E-fasciculatus_F_contig1421:426..1008Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1421 427..1008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1421.3077.1prot_E-fasciculatus_F_contig1421.3077.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1421 427..1008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1421.3077.1

>prot_E-fasciculatus_F_contig1421.3077.1 ID=prot_E-fasciculatus_F_contig1421.3077.1|Name=mRNA_E-fasciculatus_F_contig1421.3077.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=194bp
MPDPEQREESLMETCTYARGAGGTATAGYQARAAAAAAAAPPAASTGTGT
GSCPCEYPKASDSPPALVVLLEYIHARACGCPAALVALLEAAAAAGRTDM
LLPVAIGSSKGQQPSRNFFSPPPAAAARVCIEATAGVPPEFLLPLAVKHN
YLDCVRELLRLGANVEAVDEIGLTPLLVATRAGNVSAIGILIDL
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mRNA from alignment at E-fasciculatus_F_contig1421:427..1008-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1421.3077.1 ID=mRNA_E-fasciculatus_F_contig1421.3077.1|Name=mRNA_E-fasciculatus_F_contig1421.3077.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=582bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1421:427..1008- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGGATCCAGAGCAACGGGAGGAGAGTCTGATGGAAACATGCACCTA
CGCGCGCGGTGCAGGAGGTACTGCCACTGCCGGCTACCAAGCGCGTGCTG
CTGCTGCTGCTGCTGCTGCTCCTCCTGCTGCAAGCACGGGCACTGGCACA
GGATCCTGTCCTTGCGAGTACCCGAAGGCCTCAGATAGCCCCCCAGCACT
CGTCGTGCTGCTCGAATACATCCACGCTAGGGCTTGCGGCTGCCCCGCTG
CGCTCGTCGCGCTCCTCGAGGCCGCCGCCGCCGCCGGGAGGACCGACATG
CTTCTCCCCGTGGCGATAGGGTCGTCGAAGGGCCAGCAACCGAGCCGCAA
TTTCTTTTCGCCGCCGCCTGCTGCAGCAGCACGAGTATGCATAGAAGCAA
CAGCAGGGGTCCCTCCAGAGTTCCTCCTTCCGCTCGCCGTGAAGCACAAC
TACCTGGACTGCGTGCGGGAGCTGCTCAGGCTGGGCGCCAACGTAGAAGC
GGTGGACGAGATCGGGTTGACGCCGTTGCTCGTGGCTACACGGGCCGGGA
ACGTGTCGGCGATCGGCATCCTGATCGATCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1421:427..1008-

>mRNA_E-fasciculatus_F_contig1421.3077.1 ID=mRNA_E-fasciculatus_F_contig1421.3077.1|Name=mRNA_E-fasciculatus_F_contig1421.3077.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1164bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1421:427..1008- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGGATCCAGAGCAACGGGAGGAGAGTCTGATGGAAACATGCACCTA
CGCGCGCGGTGCAGGAGGTACTGCCACTGCCGGCTACCAAGCGCGTGCTG
CTGCTGCTGCTGCTGCTGCTCCTCCTGCTGCAAGCACGGGCACTGGCACA
GGATCCTGTCCTTGCGAGTACCCGAAGGCCTCAGATAGCCCCCCAGCACT
CGTCGTGCTGCTCGAATACATCCACGCTAGGGCTTGCGGCTGCCCCGCTG
CGCTCGTCGCGCTCCTCGAGGCCGCCGCCGCCGCCGGGAGGACCGACATG
CTTCTCCCCGTGGCGATAGGGTCGTCGAAGGGCCAGCAACCGAGCCGCAA
TTTCTTTTCGCCGCCGCCTGCTGCAGCAGCACGAGTATGCATAGAAGCAA
CAGCAGGGGTCCCTCCAGAGTTCCTCCTTCCGCTCGCCGTGAAGCACAAC
TACCTGGACTGCGTGCGGGAGCTGCTCAGGCTGGGCGCCAACGTAGAAGC
GGTGGACGAGATCGGGTTGACGCCGTTGCTCGTGGCTACACGGGCCGGGA
ACGTGTCGGCGATCGGCATCCTGATCGATCTGATGCCGGATCCAGAGCAA
CGGGAGGAGAGTCTGATGGAAACATGCACCTACGCGCGCGGTGCAGGAGG
TACTGCCACTGCCGGCTACCAAGCGCGTGCTGCTGCTGCTGCTGCTGCTG
CTCCTCCTGCTGCAAGCACGGGCACTGGCACAGGATCCTGTCCTTGCGAG
TACCCGAAGGCCTCAGATAGCCCCCCAGCACTCGTCGTGCTGCTCGAATA
CATCCACGCTAGGGCTTGCGGCTGCCCCGCTGCGCTCGTCGCGCTCCTCG
AGGCCGCCGCCGCCGCCGGGAGGACCGACATGCTTCTCCCCGTGGCGATA
GGGTCGTCGAAGGGCCAGCAACCGAGCCGCAATTTCTTTTCGCCGCCGCC
TGCTGCAGCAGCACGAGTATGCATAGAAGCAACAGCAGGGGTCCCTCCAG
AGTTCCTCCTTCCGCTCGCCGTGAAGCACAACTACCTGGACTGCGTGCGG
GAGCTGCTCAGGCTGGGCGCCAACGTAGAAGCGGTGGACGAGATCGGGTT
GACGCCGTTGCTCGTGGCTACACGGGCCGGGAACGTGTCGGCGATCGGCA
TCCTGATCGATCTG
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