mRNA_E-fasciculatus_F_contig14203.3073.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14203.3073.1
Unique NamemRNA_E-fasciculatus_F_contig14203.3073.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14203.3073.1 vs. uniprot
Match: A0A835ZBU9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBU9_9STRA)

HSP 1 Score: 401 bits (1031), Expect = 1.160e-137
Identity = 199/223 (89.24%), Postives = 212/223 (95.07%), Query Frame = 1 
Query:    4 LMLVPTRELALQTSAIVKEIGKHTGVQCMVTTGGTTLKDDIMRLYNVVHILVGTPGRVLDLADKGIANLKECTTLIMDEADKLLSPEFQPVLEQLVNHCSRKRQICLFSATFPVTVKDFKDRHITNPYEINLMDELTLKGITQFYAFVAERQKVHCLNTLFSKLEVNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGATRHLVSS 672
            L+LVPTRELALQTS+IVKEIGKHT VQCMVTTGGTTLKDDIMRLY+ VH+LV TPGRVLDLADKG A LK+CTT+IMDEADKLLS EFQPVLEQL+ HCS +RQICLFSATFPVTVK FKD+HI NPYEINLM+ELTLKGITQ+YAFVAERQKVHCLNTLF+KL+VNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGATRHLV S
Sbjct:  127 LILVPTRELALQTSSIVKEIGKHTQVQCMVTTGGTTLKDDIMRLYSPVHVLVATPGRVLDLADKGAAKLKKCTTVIMDEADKLLSVEFQPVLEQLLAHCSPQRQICLFSATFPVTVKAFKDKHIENPYEINLMEELTLKGITQYYAFVAERQKVHCLNTLFTKLDVNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGATRHLVCS 349
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BLAST of mRNA_E-fasciculatus_F_contig14203.3073.1 vs. uniprot
Match: D7FQZ1_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQZ1_ECTSI)

HSP 1 Score: 393 bits (1010), Expect = 9.070e-137
Identity = 194/195 (99.49%), Postives = 195/195 (100.00%), Query Frame = 1 
Query:   88 MVTTGGTTLKDDIMRLYNVVHILVGTPGRVLDLADKGIANLKECTTLIMDEADKLLSPEFQPVLEQLVNHCSRKRQICLFSATFPVTVKDFKDRHITNPYEINLMDELTLKGITQFYAFVAERQKVHCLNTLFSKLEVNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGATRHLVSS 672
            MVTTGGTTLKDDIMRLYNVVHILVGTPGRVLDLADKGIANLKECTTLIMDEADKLLSPEFQPVLEQLVNHCSRKRQICLFSATFPVTVKDFKDRHI+NPYEINLMDELTLKGITQFYAFVAERQKVHCLNTLFSKLEVNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGATRHLVSS
Sbjct:    1 MVTTGGTTLKDDIMRLYNVVHILVGTPGRVLDLADKGIANLKECTTLIMDEADKLLSPEFQPVLEQLVNHCSRKRQICLFSATFPVTVKDFKDRHISNPYEINLMDELTLKGITQFYAFVAERQKVHCLNTLFSKLEVNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGATRHLVSS 195
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BLAST of mRNA_E-fasciculatus_F_contig14203.3073.1 vs. uniprot
Match: W7T0L9_9STRA (RNA helicase,ATP-dependent, DEAD-box type n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T0L9_9STRA)

HSP 1 Score: 397 bits (1020), Expect = 3.080e-136
Identity = 194/224 (86.61%), Postives = 210/224 (93.75%), Query Frame = 1 
Query:    1 VLMLVPTRELALQTSAIVKEIGKHTGVQCMVTTGGTTLKDDIMRLYNVVHILVGTPGRVLDLADKGIANLKECTTLIMDEADKLLSPEFQPVLEQLVNHCSRKRQICLFSATFPVTVKDFKDRHITNPYEINLMDELTLKGITQFYAFVAERQKVHCLNTLFSKLEVNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGATRHLVSS 672
            VLMLVPTRELALQTS+IVKE+GKH  VQCMV+TGGTTLKDDIMRLYNVVH+LVGTPGR+LDLADKG+A+L +C T+IMDEADKLLSPEFQP+LE+L+ HC   RQI LFSATFPV VK FKD+HI NPYEINLMDELTL+GITQ+YAFV ERQKVHCLNTLFSKLE+NQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNG TRHLVSS
Sbjct:  109 VLMLVPTRELALQTSSIVKEMGKHMNVQCMVSTGGTTLKDDIMRLYNVVHVLVGTPGRILDLADKGVADLSKCHTVIMDEADKLLSPEFQPILERLLAHCMPNRQIGLFSATFPVAVKTFKDKHIENPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGGTRHLVSS 332
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BLAST of mRNA_E-fasciculatus_F_contig14203.3073.1 vs. uniprot
Match: K3WAL5_GLOUD (Uncharacterized protein n=42 Tax=Oomycota TaxID=4762 RepID=K3WAL5_GLOUD)

HSP 1 Score: 394 bits (1011), Expect = 8.760e-135
Identity = 190/224 (84.82%), Postives = 212/224 (94.64%), Query Frame = 1 
Query:    1 VLMLVPTRELALQTSAIVKEIGKHTGVQCMVTTGGTTLKDDIMRLYNVVHILVGTPGRVLDLADKGIANLKECTTLIMDEADKLLSPEFQPVLEQLVNHCSRKRQICLFSATFPVTVKDFKDRHITNPYEINLMDELTLKGITQFYAFVAERQKVHCLNTLFSKLEVNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGATRHLVSS 672
            VL+LVPTRELALQTSAIVKEIGKH GV+CMV+TGGT+LKDDIMRLY  VHILVGTPGRV+DLA+KG+A+L +C+T+IMDEADKLLSPEFQP+LEQL+NH ++ RQICLFSATFPVTVK FKD+ I NPYEINLMDELTLKG++QFYAFV ERQKVHCLNTLFSKL++NQSIIFCNSVNRVELLAKK+TELGYSCFYIHAKM Q+HRNRVFHEFRNGATRHLV S
Sbjct:  115 VLILVPTRELALQTSAIVKEIGKHMGVECMVSTGGTSLKDDIMRLYQTVHILVGTPGRVMDLANKGVADLSQCSTVIMDEADKLLSPEFQPLLEQLLNHTAKNRQICLFSATFPVTVKAFKDKFIENPYEINLMDELTLKGVSQFYAFVEERQKVHCLNTLFSKLDINQSIIFCNSVNRVELLAKKVTELGYSCFYIHAKMNQAHRNRVFHEFRNGATRHLVCS 338
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BLAST of mRNA_E-fasciculatus_F_contig14203.3073.1 vs. uniprot
Match: A0A7S2SW80_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW80_9STRA)

HSP 1 Score: 387 bits (994), Expect = 2.470e-132
Identity = 186/224 (83.04%), Postives = 210/224 (93.75%), Query Frame = 1 
Query:    1 VLMLVPTRELALQTSAIVKEIGKHTGVQCMVTTGGTTLKDDIMRLYNVVHILVGTPGRVLDLADKGIANLKECTTLIMDEADKLLSPEFQPVLEQLVNHCSRKRQICLFSATFPVTVKDFKDRHITNPYEINLMDELTLKGITQFYAFVAERQKVHCLNTLFSKLEVNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGATRHLVSS 672
            VL+LVPTRELALQTSA+V+EIGKH  V+CMV+TGGT+LKDDIMRL+N VHILVGTPGR+LDLA KG+A+L  C ++IMDEADKLLSPEFQP+LE L++  S  RQICLFSATFPVTVK+FKD+ ITNPYEINLMD+LTLKGITQ+YAFV E+QKVHCLNTLFSKLE+NQS+IFCNSVNRVELLAK+ITELGYSCFYIHAKMQQ+HRNRVFHEFRNGATRHLVSS
Sbjct:  106 VLILVPTRELALQTSAVVREIGKHLSVECMVSTGGTSLKDDIMRLFNTVHILVGTPGRILDLASKGVADLSHCKSVIMDEADKLLSPEFQPILESLISFSSPNRQICLFSATFPVTVKNFKDKFITNPYEINLMDDLTLKGITQYYAFVQEKQKVHCLNTLFSKLEINQSVIFCNSVNRVELLAKRITELGYSCFYIHAKMQQAHRNRVFHEFRNGATRHLVSS 329
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BLAST of mRNA_E-fasciculatus_F_contig14203.3073.1 vs. uniprot
Match: F0YP09_AURAN (Uncharacterized protein n=4 Tax=Pelagomonadales TaxID=54409 RepID=F0YP09_AURAN)

HSP 1 Score: 385 bits (988), Expect = 2.720e-131
Identity = 184/224 (82.14%), Postives = 212/224 (94.64%), Query Frame = 1 
Query:    1 VLMLVPTRELALQTSAIVKEIGKHTGVQCMVTTGGTTLKDDIMRLYNVVHILVGTPGRVLDLADKGIANLKECTTLIMDEADKLLSPEFQPVLEQLVNHCSRKRQICLFSATFPVTVKDFKDRHITNPYEINLMDELTLKGITQFYAFVAERQKVHCLNTLFSKLEVNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGATRHLVSS 672
            VL+L+PTRELALQTSA+V+E+GKH  V+CMV+TGGT+LKDDIMRLY  VH+LVGTPGR+LDL++KG+A L  C T+IMDEADKLLSPEF+P+LE+LV+HCS +RQICLFSATFPVTVK+FK++ I NPYEINLMD+LTLKGITQFYAFV ERQKVHCL+TLF+KLE+NQS+IFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNG+TRHLVSS
Sbjct:  115 VLILIPTRELALQTSAVVRELGKHMKVECMVSTGGTSLKDDIMRLYKPVHVLVGTPGRILDLSEKGVAALGRCHTVIMDEADKLLSPEFEPLLEKLVHHCSPERQICLFSATFPVTVKNFKEKFIHNPYEINLMDDLTLKGITQFYAFVEERQKVHCLHTLFTKLEINQSVIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGSTRHLVSS 338
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BLAST of mRNA_E-fasciculatus_F_contig14203.3073.1 vs. uniprot
Match: B8BVK5_THAPS (Atp-dependent RNA DEAD/DEAH box helicase n=4 Tax=Bacillariophyta TaxID=2836 RepID=B8BVK5_THAPS)

HSP 1 Score: 377 bits (969), Expect = 1.950e-128
Identity = 181/224 (80.80%), Postives = 207/224 (92.41%), Query Frame = 1 
Query:    1 VLMLVPTRELALQTSAIVKEIGKHTGVQCMVTTGGTTLKDDIMRLYNVVHILVGTPGRVLDLADKGIANLKECTTLIMDEADKLLSPEFQPVLEQLVNHCSRKRQICLFSATFPVTVKDFKDRHITNPYEINLMDELTLKGITQFYAFVAERQKVHCLNTLFSKLEVNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGATRHLVSS 672
            VL+L+PTRELALQTSAIVKEIGKH G+QCMVTTGGT+LKDDIMRLYN VHI+V TPGR+LDLA K +A+L +C T+IMDEADKLLS EFQPVLE++++ C +K QICLFSATFPVTVK+F  + + NPY INLMDELTL+GITQFYA+V ERQKVHCLNTLFSKLE+NQSIIFCNSVNRVELLAKK+TELGYSC+YIHAKMQQ++RNRVFHEFRNGATRHLV+S
Sbjct:  113 VLILIPTRELALQTSAIVKEIGKHMGIQCMVTTGGTSLKDDIMRLYNSVHIIVATPGRILDLASKKVADLSKCRTIIMDEADKLLSTEFQPVLEKIIDLCDKKHQICLFSATFPVTVKEFCQKFVPNPYSINLMDELTLRGITQFYAYVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKVTELGYSCYYIHAKMQQANRNRVFHEFRNGATRHLVTS 336
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BLAST of mRNA_E-fasciculatus_F_contig14203.3073.1 vs. uniprot
Match: A0A7R9UI22_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UI22_9STRA)

HSP 1 Score: 376 bits (966), Expect = 9.690e-128
Identity = 181/224 (80.80%), Postives = 206/224 (91.96%), Query Frame = 1 
Query:    1 VLMLVPTRELALQTSAIVKEIGKHTGVQCMVTTGGTTLKDDIMRLYNVVHILVGTPGRVLDLADKGIANLKECTTLIMDEADKLLSPEFQPVLEQLVNHCSRKRQICLFSATFPVTVKDFKDRHITNPYEINLMDELTLKGITQFYAFVAERQKVHCLNTLFSKLEVNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGATRHLVSS 672
            VLMLVPTRELALQTSAIV+EIGK+TGV+CMVTTGGT+L++DIMRLYN VHI+V TPGR+LDLADKG+A L  C+T++MDEADKLLSPEFQPVLEQL+N    +RQICLFSATFP T++ F  R + NPY+INLM+ELTL+GITQFYAFV ERQKVHCLNTLFSKL++NQSIIFCNSVNRVELLA+KITELGYSC+YIHAKMQQ+HRNRVFHEFRNG TRHLV S
Sbjct:  130 VLMLVPTRELALQTSAIVREIGKYTGVECMVTTGGTSLREDIMRLYNPVHIIVATPGRILDLADKGVARLDRCSTVVMDEADKLLSPEFQPVLEQLLNFTPAERQICLFSATFPNTIRSFCQRFVPNPYQINLMEELTLRGITQFYAFVEERQKVHCLNTLFSKLDINQSIIFCNSVNRVELLARKITELGYSCYYIHAKMQQAHRNRVFHEFRNGGTRHLVCS 353
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BLAST of mRNA_E-fasciculatus_F_contig14203.3073.1 vs. uniprot
Match: K0SLJ3_THAOC (Uncharacterized protein n=3 Tax=Coscinodiscophyceae TaxID=33836 RepID=K0SLJ3_THAOC)

HSP 1 Score: 375 bits (964), Expect = 1.150e-127
Identity = 178/224 (79.46%), Postives = 204/224 (91.07%), Query Frame = 1 
Query:    1 VLMLVPTRELALQTSAIVKEIGKHTGVQCMVTTGGTTLKDDIMRLYNVVHILVGTPGRVLDLADKGIANLKECTTLIMDEADKLLSPEFQPVLEQLVNHCSRKRQICLFSATFPVTVKDFKDRHITNPYEINLMDELTLKGITQFYAFVAERQKVHCLNTLFSKLEVNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGATRHLVSS 672
            VL+L+PTRELALQTSAIVKEIGKH G+QCMVTTGGT+LKDDIMR+YN VH++V TPGR+LDLA + +A+L +C T+IMDEADKLLSPEFQPVLE+++  C    QICLFSATFPVTVKDF  +H+  PY INLM+ELTL+GITQFYA+V ERQKVHCLNTLFSKLE+NQSIIFCNSVNRVELLAKK+TELGYSCFYIHAKMQQ++RNRVFHEFRNG TRHLV+S
Sbjct:  114 VLVLIPTRELALQTSAIVKEIGKHMGIQCMVTTGGTSLKDDIMRMYNTVHMIVATPGRILDLASRKVADLSKCRTIIMDEADKLLSPEFQPVLEKIIGLCDSSHQICLFSATFPVTVKDFCQKHVPKPYSINLMEELTLRGITQFYAYVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKVTELGYSCFYIHAKMQQANRNRVFHEFRNGGTRHLVTS 337
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BLAST of mRNA_E-fasciculatus_F_contig14203.3073.1 vs. uniprot
Match: A0A396ZY38_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZY38_9STRA)

HSP 1 Score: 394 bits (1012), Expect = 3.330e-127
Identity = 189/224 (84.38%), Postives = 213/224 (95.09%), Query Frame = 1 
Query:    1 VLMLVPTRELALQTSAIVKEIGKHTGVQCMVTTGGTTLKDDIMRLYNVVHILVGTPGRVLDLADKGIANLKECTTLIMDEADKLLSPEFQPVLEQLVNHCSRKRQICLFSATFPVTVKDFKDRHITNPYEINLMDELTLKGITQFYAFVAERQKVHCLNTLFSKLEVNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGATRHLVSS 672
            V++LVPTRELALQTSAIVKEIGKH GV+CMV+TGGT+LKDDIMRLYN VHILVGTPGR++DLA+KG+A+L +C+T+IMDEADKLLSPEFQP+LEQLVNH +  RQICLFSATFPVTVK FKD++I NPYEINLMDELTLKG++QFYAFV ERQKVHCLNTLFSKL++NQSIIFCNSVNRVELLAKK+TELG+SCFYIHAKM Q+HRNRVFHEFRNGATRHLV S
Sbjct:   98 VMILVPTRELALQTSAIVKEIGKHMGVECMVSTGGTSLKDDIMRLYNTVHILVGTPGRIMDLANKGVADLSQCSTVIMDEADKLLSPEFQPLLEQLVNHTAPGRQICLFSATFPVTVKSFKDKYIDNPYEINLMDELTLKGVSQFYAFVEERQKVHCLNTLFSKLDINQSIIFCNSVNRVELLAKKVTELGFSCFYIHAKMNQAHRNRVFHEFRNGATRHLVCS 321
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14203.3073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBU9_9STRA1.160e-13789.24P-loop containing nucleoside triphosphate hydrolas... [more]
D7FQZ1_ECTSI9.070e-13799.49DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
W7T0L9_9STRA3.080e-13686.61RNA helicase,ATP-dependent, DEAD-box type n=3 Tax=... [more]
K3WAL5_GLOUD8.760e-13584.82Uncharacterized protein n=42 Tax=Oomycota TaxID=47... [more]
A0A7S2SW80_9STRA2.470e-13283.04Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YP09_AURAN2.720e-13182.14Uncharacterized protein n=4 Tax=Pelagomonadales Ta... [more]
B8BVK5_THAPS1.950e-12880.80Atp-dependent RNA DEAD/DEAH box helicase n=4 Tax=B... [more]
A0A7R9UI22_9STRA9.690e-12880.80Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
K0SLJ3_THAOC1.150e-12779.46Uncharacterized protein n=3 Tax=Coscinodiscophycea... [more]
A0A396ZY38_9STRA3.330e-12784.38Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14203contigE-fasciculatus_F_contig14203:235..2881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score398.7
Seed ortholog evalue1.8e-108
Seed eggNOG ortholog653948.CCA22119
Preferred nameDHH1
KEGG koko:K12614
KEGG Pathwayko03018,map03018
KEGG ModuleM00395
GOsGO:0000288,GO:0000290,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006448,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010494,GO:0010501,GO:0010556,GO:0010558,GO:0010603,GO:0010605,GO:0010608,GO:0010629,GO:0016020,GO:0016032,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017148,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032991,GO:0033043,GO:0033962,GO:0034063,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045182,GO:0045900,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090079,GO:0090304,GO:0097159,GO:0098552,GO:0098562,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902115,GO:1990904,GO:2000112,GO:2000113
EggNOG free text desc.cytoplasmic mRNA processing body assembly
EggNOG OGsCOG0513@1,KOG0326@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-09_003200.1
Exons5
Model size672
Cds size666
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14203.3073.1prot_E-fasciculatus_F_contig14203.3073.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14203 235..2875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927910.8294663-CDS-E-fasciculatus_F_contig14203:234..3711622927910.8294663-CDS-E-fasciculatus_F_contig14203:234..371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14203 235..371 -
1695995748.1539252-CDS-E-fasciculatus_F_contig14203:234..3711695995748.1539252-CDS-E-fasciculatus_F_contig14203:234..371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14203 235..371 -
1622927910.8462868-CDS-E-fasciculatus_F_contig14203:587..7021622927910.8462868-CDS-E-fasciculatus_F_contig14203:587..702Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14203 588..702 -
1695995748.1675162-CDS-E-fasciculatus_F_contig14203:587..7021695995748.1675162-CDS-E-fasciculatus_F_contig14203:587..702Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14203 588..702 -
1622927910.8699524-CDS-E-fasciculatus_F_contig14203:1579..17591622927910.8699524-CDS-E-fasciculatus_F_contig14203:1579..1759Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14203 1580..1759 -
1695995748.1776433-CDS-E-fasciculatus_F_contig14203:1579..17591695995748.1776433-CDS-E-fasciculatus_F_contig14203:1579..1759Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14203 1580..1759 -
1622927910.881061-CDS-E-fasciculatus_F_contig14203:2202..23521622927910.881061-CDS-E-fasciculatus_F_contig14203:2202..2352Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14203 2203..2352 -
1695995748.1895325-CDS-E-fasciculatus_F_contig14203:2202..23521695995748.1895325-CDS-E-fasciculatus_F_contig14203:2202..2352Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14203 2203..2352 -
1622927910.8914392-CDS-E-fasciculatus_F_contig14203:2791..28751622927910.8914392-CDS-E-fasciculatus_F_contig14203:2791..2875Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14203 2792..2875 -
1695995748.2028215-CDS-E-fasciculatus_F_contig14203:2791..28751695995748.2028215-CDS-E-fasciculatus_F_contig14203:2791..2875Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14203 2792..2875 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927910.912749-UTR-E-fasciculatus_F_contig14203:2875..28811622927910.912749-UTR-E-fasciculatus_F_contig14203:2875..2881Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14203 2876..2881 -
1695995748.2128503-UTR-E-fasciculatus_F_contig14203:2875..28811695995748.2128503-UTR-E-fasciculatus_F_contig14203:2875..2881Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14203 2876..2881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14203.3073.1

>prot_E-fasciculatus_F_contig14203.3073.1 ID=prot_E-fasciculatus_F_contig14203.3073.1|Name=mRNA_E-fasciculatus_F_contig14203.3073.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=222bp
MLVPTRELALQTSAIVKEIGKHTGVQCMVTTGGTTLKDDIMRLYNVVHIL
VGTPGRVLDLADKGIANLKECTTLIMDEADKLLSPEFQPVLEQLVNHCSR
KRQICLFSATFPVTVKDFKDRHITNPYEINLMDELTLKGITQFYAFVAER
QKVHCLNTLFSKLEVNQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQ
QSHRNRVFHEFRNGATRHLVSS
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mRNA from alignment at E-fasciculatus_F_contig14203:235..2881-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14203.3073.1 ID=mRNA_E-fasciculatus_F_contig14203.3073.1|Name=mRNA_E-fasciculatus_F_contig14203.3073.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2647bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14203:235..2881- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGCTGATGCTGGTGCCAACGCGTGAGCTGGCACTGCAGACGTCGGCAAT
CGTGAAGGAGATCGGCAAGCACACTGGCGTGCAGTGCATGGTGAGCATGA
GTGGGGCGTGCGGGAGAGGAAGAAGGCAGGGAAGGATTTGTCATTGTGCG
GCAGCGCTGTTGATGGTGGTGGTTTCTCCATGTCCGATTTGATGGGGTCG
GTGTGGTGTGTGGCCGTTGGAAAGGTGATTGACGAGGCGTTGGCGGTGCG
AATGGGAGGGGGGGGGGAGGCGACTGGGTGATATGGTGTGGGACAGCGGC
CGAAGCCATGAGCTGCAGCGCGGCACAACAGCTTCAGTGTACAAATTATT
ATCATAGCGTGCAAACGACTAGAGCTCAATAGTAATGACCACGGCAATGT
TATTGTTTTGCGGTGGCGCGATTTGTATTCGTGCTCATGTTGGAGTTAGG
ATCCCATAGTGCGACGGCTGTTTTCGACATGCCCCCCTCGCGCTGCCTCG
GGCCTCGATCTCGCGACACCGGTGCGCAGGTCACAACTGGGGGCACTACC
CTGAAGGACGATATTATGCGTCTCTACAACGTTGTGCACATCTTGGTCGG
CACCCCCGGACGCGTGTTGGACCTCGCGGACAAGGGCATCGCTAACCTCA
AGGAGTGCACCACCCTCATCATGGACGAGGTGAGGTCCTATCCCTCATCC
CCTAGCGAAAGTAGAAACACTCCTTGGGCATATGAACGAGTTGTCTATGT
TTATCGTTCAAAAGGTTAAAGAGATGAGACGAGTGGTGAAGAAGCCCTTG
ACTCGTTTGCTCCTTCTGCCTTCACTCTCATACGTTGGCACCCTCTCCTT
CTCCTCCCACCGGCGGCGCTTTTGCTTCTCCTATCCTCTATCCTCTATCC
TCACGCTGGTCGTCCACCTTCCTTGCGTCCGGGTCTGGGGTGCATGCGGT
CATTCATGCGTGCATCCTTGAAGTGCTGTGTTGGCGCGGAGATATCCGCA
ATCAATCCTGTTTTCTGCTCTCCCCAACAATTATACTACGAAATTGTCGT
TTGCTTTTTTGCCTCACACGCGGCCGCTTACTCTGTCCCTTGTGCTTGAT
CATTTATTTATTTATTTTCCAGGCGGACAAGCTTCTCTCGCCCGAGTTCC
AGCCCGTGCTGGAGCAGCTGGTGAACCACTGCTCCAGGAAGAGGCAAATC
TGCCTCTTCAGCGCCACTTTCCCCGTGACTGTGAAGGACTTCAAGGACCG
CCACATCACCAACCCGTACGAGATCAACCTGATGGACGAGCTCACGCTCA
AGGTGGGCGCCGCATGTGATGATTGATTGATGCATGGGGTTCTTGGTACT
GCTGTCGTAGGCCCCCTCTGTAAGGCGGGAAAAGTTGACTGGCACAGACG
CAATAGTATAATCAAGTTGTTCTGCACGTTGAATAAGGCGGGTGCGTTGT
ACAGGGCGGGTGAATCGGTCTCCGCGCCGAGGGCCTACTGTACGACTGTA
GGGTGGTGTGTTGGGTTTACAACGTCTACAGTACTGCAGTAGATGAGACG
ATTCTCCTCGTCTCGCGTCTCTCGTTGTGTTTTGTTGGTGGAAACACGCT
GGTATTTAGTAGTAGTGATGGAGGAATACCGTTGGGCGTGTGATTATGGG
GGTTGCAGTTGGGTGGATTGCGGGACGACAGGGAGAAGTTGTATAATAGT
ATCGCTGGACGAACTACCTTGTTCTGTTCTGACGAAGAGGGCAGTGTCTT
TCATCGCGTGCCAGATGTCAGCACGAAATTCGTACTGACATCCGGCAGGC
GATGAAAAACACTGAACTATTCTCCGTCAGAACAGAACAAGGTCGGTCAA
GACGTACTAAGTAAAAGTTCTCCCGCAATCTACCAACTACACCCCGTTAA
AACATGCCCGATTTTAATATGCTACGTGTCCCCGCCCCGGTTGGTTGGCG
GTTTGAACATGACACGCAGGGAAGTCGCTGCTGCAGTGTACCATGTGAGA
CTGACTTGTCATAAAGTTGGAAGGTTGAGCTCCCCATTCGGCACGGGCGT
GTTGCTACCGATGACAATTCATCTATCCCGACTCGTTCTCCTCATGCTTT
GTCTGCGTCAACTATTTTGACGAGAACATGCGTGACGGTAGTGTTGTTTT
CTTGTTCATTGTTTTTTTTTTTCCAACAGGGTATCACCCAATTCTACGCC
TTCGTTGCGGAGCGCCAGAAAGTGCACTGCCTCAACACGCTCTTCTCCAA
GCTGGAGGTCAACCAGTCCATCATCTTCTGCAACTCGGTCAACAGTGAGT
CGGTTCAGCCAGGGCTCGTGCCGTTTTCCAATCTATTATAAATAGTCACA
AGCCTTGTCGGCAAAGGTTTGTGCGAAGTGAACTGCCCGAGTCCCCTTCG
GGCGTAACGTCGAATCTCGGCGCACAGCAGTAAATGTATCAGGCGAAGTG
ATCAAACTACTAGATGATGCATTGGACGTTACTTGACGCTCTTCTATTCT
GATGGAACAGGGGTGGAGCTCCTCGCGAAGAAAATCACGGAGCTGGGCTA
CTCGTGCTTCTACATCCATGCCAAGATGCAGCAGTCGCACCGCAACCGCG
TGTTCCACGAGTTCCGTAACGGAGCCACTCGCCACCTGGTGTCTTCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14203:235..2881-

>mRNA_E-fasciculatus_F_contig14203.3073.1 ID=mRNA_E-fasciculatus_F_contig14203.3073.1|Name=mRNA_E-fasciculatus_F_contig14203.3073.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1332bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14203:235..2881- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGGTGCCAACGCGTGAGCTGGCACTGCAGACGTCGGCAATCGTGAA
GGAGATCGGCAAGCACACTGGCGTGCAGTGCATGATGCTGGTGCCAACGC
GTGAGCTGGCACTGCAGACGTCGGCAATCGTGAAGGAGATCGGCAAGCAC
ACTGGCGTGCAGTGCATGGTCACAACTGGGGGCACTACCCTGAAGGACGA
TATTATGCGTCTCTACAACGTTGTGCACATCTTGGTCGGCACCCCCGGAC
GCGTGTTGGACCTCGCGGACAAGGGCATCGCTAACCTCAAGGAGTGCACC
ACCCTCATCATGGACGAGGTCACAACTGGGGGCACTACCCTGAAGGACGA
TATTATGCGTCTCTACAACGTTGTGCACATCTTGGTCGGCACCCCCGGAC
GCGTGTTGGACCTCGCGGACAAGGGCATCGCTAACCTCAAGGAGTGCACC
ACCCTCATCATGGACGAGGCGGACAAGCTTCTCTCGCCCGAGTTCCAGCC
CGTGCTGGAGCAGCTGGTGAACCACTGCTCCAGGAAGAGGCAAATCTGCC
TCTTCAGCGCCACTTTCCCCGTGACTGTGAAGGACTTCAAGGACCGCCAC
ATCACCAACCCGTACGAGATCAACCTGATGGACGAGCTCACGCTCAAGGC
GGACAAGCTTCTCTCGCCCGAGTTCCAGCCCGTGCTGGAGCAGCTGGTGA
ACCACTGCTCCAGGAAGAGGCAAATCTGCCTCTTCAGCGCCACTTTCCCC
GTGACTGTGAAGGACTTCAAGGACCGCCACATCACCAACCCGTACGAGAT
CAACCTGATGGACGAGCTCACGCTCAAGGGTATCACCCAATTCTACGCCT
TCGTTGCGGAGCGCCAGAAAGTGCACTGCCTCAACACGCTCTTCTCCAAG
CTGGAGGTCAACCAGTCCATCATCTTCTGCAACTCGGTCAACAGGTATCA
CCCAATTCTACGCCTTCGTTGCGGAGCGCCAGAAAGTGCACTGCCTCAAC
ACGCTCTTCTCCAAGCTGGAGGTCAACCAGTCCATCATCTTCTGCAACTC
GGTCAACAGGGTGGAGCTCCTCGCGAAGAAAATCACGGAGCTGGGCTACT
CGTGCTTCTACATCCATGCCAAGATGCAGCAGTCGCACCGCAACCGCGTG
TTCCACGAGTTCCGTAACGGAGCCACTCGCCACCTGGTGTCTTCGGGGTG
GAGCTCCTCGCGAAGAAAATCACGGAGCTGGGCTACTCGTGCTTCTACAT
CCATGCCAAGATGCAGCAGTCGCACCGCAACCGCGTGTTCCACGAGTTCC
GTAACGGAGCCACTCGCCACCTGGTGTCTTCG
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