mRNA_E-fasciculatus_F_contig142.3066.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig142.3066.1
Unique NamemRNA_E-fasciculatus_F_contig142.3066.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig142.3066.1 vs. uniprot
Match: A0A6H5JIK3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIK3_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 8.510e-42
Identity = 88/104 (84.62%), Postives = 91/104 (87.50%), Query Frame = 1 
Query:    1 MNAEPAVADN--RERPDEVQIGVVVVPLVLSAALVTAVVTYRCFANRLRRDRLALERQEEVEEIRAARGREEAGEGGSTHRSAAMAGLGKDQYMSAYKNLLTQA 306
            MNAE A AD    E PDEVQIGV+V+PLVLSAALVT VV YRCFANRLRRDRLALERQ EVEEIRAARGREEAGEGGS HRSAAMAGLG+DQYMSAYK LL QA
Sbjct:    1 MNAELAAADTLRSEGPDEVQIGVIVLPLVLSAALVTVVVAYRCFANRLRRDRLALERQAEVEEIRAARGREEAGEGGSPHRSAAMAGLGEDQYMSAYKKLLAQA 104
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig142.3066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIK3_9PHAE8.510e-4284.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig142contigE-fasciculatus_F_contig142:14715..17553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_007400.1
Exons2
Model size1417
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig142.3066.1prot_E-fasciculatus_F_contig142.3066.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig142 14715..16445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927910.0640233-CDS-E-fasciculatus_F_contig142:14714..149041622927910.0640233-CDS-E-fasciculatus_F_contig142:14714..14904Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 14715..14904 +
1695995747.900837-CDS-E-fasciculatus_F_contig142:14714..149041695995747.900837-CDS-E-fasciculatus_F_contig142:14714..14904Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 14715..14904 +
1622927910.078332-CDS-E-fasciculatus_F_contig142:16326..164451622927910.078332-CDS-E-fasciculatus_F_contig142:16326..16445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 16327..16445 +
1695995747.910343-CDS-E-fasciculatus_F_contig142:16326..164451695995747.910343-CDS-E-fasciculatus_F_contig142:16326..16445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig142 16327..16445 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927910.3138876-UTR-E-fasciculatus_F_contig142:16445..175531622927910.3138876-UTR-E-fasciculatus_F_contig142:16445..17553Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig142 16446..17553 +
1695995747.9254937-UTR-E-fasciculatus_F_contig142:16445..175531695995747.9254937-UTR-E-fasciculatus_F_contig142:16445..17553Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig142 16446..17553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig142.3066.1

>prot_E-fasciculatus_F_contig142.3066.1 ID=prot_E-fasciculatus_F_contig142.3066.1|Name=mRNA_E-fasciculatus_F_contig142.3066.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=103bp
MNAEPAVADNRERPDEVQIGVVVVPLVLSAALVTAVVTYRCFANRLRRDR
LALERQEEVEEIRAARGREEAGEGGSTHRSAAMAGLGKDQYMSAYKNLLT
QA*
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mRNA from alignment at E-fasciculatus_F_contig142:14715..17553+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig142.3066.1 ID=mRNA_E-fasciculatus_F_contig142.3066.1|Name=mRNA_E-fasciculatus_F_contig142.3066.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2839bp|location=Sequence derived from alignment at E-fasciculatus_F_contig142:14715..17553+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAATGCCGAGCCGGCGGTGGCTGACAACCGCGAACGTCCCGATGAAGT
GCAGATAGGCGTGGTCGTTGTCCCCCTCGTGCTGTCTGCGGCCTTGGTGA
CCGCGGTGGTGACATATCGATGTTTCGCCAACAGGCTCCGGAGAGATCGC
CTCGCCCTTGAGCGTCAAGAGGAAGTCGAAGAGATCAGAGGTAACGGGTA
ACGAGCACAAGTAGAAAACATTCAGTGTCGCTCGCTCTCGTGGTGTTCGT
GAGAACATCCGCATGCATAGGGGAAGCCATTTGTGCGTTTTGTGGCCTCC
TATTGATATACTTCTAGTCTACAGTTTTTCAAGTTCTACCGCAATGTGTG
CGGGATGTTCAACGAATTTGTTGACTGCTGTTGTATGTACGTAGTTGTTG
ATGCTAGCGGCCGCCCACACGCTCCATCGGTGCTTCCTGATTCCTGCTGT
GAAGGAGACACAGACATTGCCGAACACGACGTTTGGATTTGGCGTTTGCA
ATTGGTGTTGTAGCAGTCCTGTATGCGAAATCCTGGTTCAGAAGTCAAAG
CGCTAGCTGGGCAGCAAAGTAGTTGCTGCCAAAGGCAGAGGTTCGGCAGC
AACTGCGGCAGCAGCGGCGGCGGCGGTACTCTGCCCCATCAACACGGCCT
GGCCCGTAGCGCCTGTGTTATGTTTCTGCCACGGGTTTGTCCTAGTGATT
TCCCACGCGTTGCTTCATTGTGTCTCTGTGTGCTATGCTACAGTAGTGTG
TGGACGGCGCGATCATGAGCGTTTGCTTAGAGAAACAGAACTAACTTCTC
ACGGTTTCGCCGAGAACACGCAACATGTCTACTCTTGAGCATGTCCTACA
ATACAGGTGATAAACCTTGGTCACATACGGTGGCTAGGTGATTTAGTCGG
GGTGTGCTCATAACCTAATGCTAGTACCGTAGGCTGCAATCTCTCCGGCG
GGATGAAGAAACTTGACAGCAGATTATTGAAACGTTTGATTGTGTTGCAG
TATTTTTGTATGTGTAGTACACATGAGAGACGGCAGTGCTGACCCCTTGA
CGCGTCAAGAATTGAAGGCCAGCGTCGCCGGAGGAACATGGAAAATTCCT
TCCGTATGGCTAGTCTGCGAAGCATAGTCCCAAAGGTAAAGTAAACAGGA
AGAGAACAAGAAAAGTATGGCGTGGAGTACTTTCTGCGTGATGTCAAGTA
ATCGCAATGAAAGCTGAAGTTTTTCCACGAATTCGTTCGCTGCGATTACT
TGATGCACAGCGAAAGAAGAGAGGCTCGGTAGGAGTCCGATTCCCGCAAT
GCATGCAAGAATGTGCAGCGCCCATGTCTTTTCTGCCGTTCTTGATGACG
AGGACCGGAGAATGGCCATCATCGTCCTCTCTCAAGTGACAATGAAACGC
TCTTTTTTCCTGAACGAAACCGCTCTTGTATACTTCGAAGTATCACACAA
GTGTCCACGTTTCTCTGGCTCAAAGTGCCATCTGGCGAATATCACTGGCT
GTACATGTAGTTACCAGGGTCCACCATGCTTGTTTGCCGTCTCGTGCTGT
AGGACTACGATCCAGCCGTCAACACTCGCTCTATTTTCCCGGCCCCAACC
CGTGTTTTACAGCTGCTCGAGGGAGAGAAGAAGCAGGCGAAGGGGGATCA
ACTCATCGAAGCGCTGCCATGGCGGGGTTGGGCAAAGACCAATATATGTC
GGCGTACAAGAACCTACTGACCCAGGCCTGAACATAGGAAATGCCTGTCT
TTTTGTTAGCTAATAAAGTCCTCTAGGTGTTGACTATCATTCGCATGGCT
GCTGATACTACCGTGTCTGCTTCAAAGTGTGGTGTCCGGGCACTGCTACA
TCACTCATCATTTAGCCGTAAAGCGTGCAGGTTCAGCACATGCTCGGAGA
ACCGAGTAAGGCGCAACTAACTGTTGTATATATATACCGGTCTACTCGTG
CTGTAGAATACGTCTGTAAAAGTTGAATTGGATTTGGTGCTTGATATTTT
CTGCAAACCTCGGTCGAGTTGACAGCAAGGTCGCGTGTGTCCTCTTGGTG
AGTAGACGCGGAGGCCTATTCCGATGAACAGTTTGCCTCAACGAGAATTT
TTGTAAATACTTGGAGGCCTGGCGTGGTTCTTAGTTTGTGCAAGGTGATA
GTTTGCGCGAGGCGCTAGTTTGCCCAAGGTGCTAGCATCTGGAAATACTT
TCGAGTGTTTAGTGTACGCGCGAAGCGGGGCACGGGAATACTGGTGGGAG
GGTCTGTTCATCGGCCTAACCTTGAATTCCAAATACGTACACCTCGCCGA
TTCACGTAAAGTGCTTGTTTAGGGTTAGCCATGTGATCCGTTGTGAGTCC
GCGAAAGGGAACGTACGCGCGCCTCTCGTGTTGTGCACATAGTCCTAAAA
GCAGCTTCCCTCTTGACGCGAGATCATACGGCGTTTCAGGAATGTGATAG
GTGTTGTGAACATGAGGCTTCTCTGTCTCAACATTTTTTTTTGAACTGGT
TCTGAAAGGTCTCTCAACGTTTTCTCCTTGTGGCAATCAGAAGCGCTTTC
TTGCTCCCCGTTTTGCAGCCACAAATATTGGTGTCGGTTGACTTGCATTA
TTTGCTGTCCATTAGACATCAGTTCGATCGCAATACGCGCGTGCAGTTTA
CACGAAGGAAATTAGTCCCCTGTCAAGTAGGCCTACAAACCACGACATTG
GTTACCAGAGTACCCTCCCTCTCCCCTGTGAAAGGTAGGCGTACAACACA
ACACTGCGAGTCTCTTATAGCGACGAAGTCTACCCGCTAAACAATGCTCG
TGAACGAGCTCTTGAAAATATGGGGATTTCCAGGAAATG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig142:14715..17553+

>mRNA_E-fasciculatus_F_contig142.3066.1 ID=mRNA_E-fasciculatus_F_contig142.3066.1|Name=mRNA_E-fasciculatus_F_contig142.3066.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig142:14715..17553+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAATGCCGAGCCGGCGGTGGCTGACAACCGCGAACGTCCCGATGAAGT
GCAGATAGGCGTGGTCGTTGTCCCCCTCGTGCTGTCTGCGGCCTTGGTGA
CCGCGGTGGTGACATATCGATGTTTCGCCAACAGGCTCCGGAGAGATCGC
CTCGCCCTTGAGCGTCAAGAGGAAGTCGAAGAGATCAGAGATGAATGCCG
AGCCGGCGGTGGCTGACAACCGCGAACGTCCCGATGAAGTGCAGATAGGC
GTGGTCGTTGTCCCCCTCGTGCTGTCTGCGGCCTTGGTGACCGCGGTGGT
GACATATCGATGTTTCGCCAACAGGCTCCGGAGAGATCGCCTCGCCCTTG
AGCGTCAAGAGGAAGTCGAAGAGATCAGAGCTGCTCGAGGGAGAGAAGAA
GCAGGCGAAGGGGGATCAACTCATCGAAGCGCTGCCATGGCGGGGTTGGG
CAAAGACCAATATATGTCGGCGTACAAGAACCTACTGACCCAGGCCTGAC
TGCTCGAGGGAGAGAAGAAGCAGGCGAAGGGGGATCAACTCATCGAAGCG
CTGCCATGGCGGGGTTGGGCAAAGACCAATATATGTCGGCGTACAAGAAC
CTACTGACCCAGGCCTGA
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