mRNA_E-fasciculatus_F_contig14197.3062.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14197.3062.1
Unique NamemRNA_E-fasciculatus_F_contig14197.3062.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14197.3062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14197contigE-fasciculatus_F_contig14197:593..1150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size560
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927909.8386607-CDS-E-fasciculatus_F_contig14197:592..9011622927909.8386607-CDS-E-fasciculatus_F_contig14197:592..901Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14197 593..901 +
1695995747.7860975-CDS-E-fasciculatus_F_contig14197:592..9011695995747.7860975-CDS-E-fasciculatus_F_contig14197:592..901Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14197 593..901 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927909.858332-UTR-E-fasciculatus_F_contig14197:901..11501622927909.858332-UTR-E-fasciculatus_F_contig14197:901..1150Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14197 902..1150 +
1695995747.7976875-UTR-E-fasciculatus_F_contig14197:901..11501695995747.7976875-UTR-E-fasciculatus_F_contig14197:901..1150Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig14197 902..1150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14197.3062.1prot_E-fasciculatus_F_contig14197.3062.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14197 593..901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14197.3062.1

>prot_E-fasciculatus_F_contig14197.3062.1 ID=prot_E-fasciculatus_F_contig14197.3062.1|Name=mRNA_E-fasciculatus_F_contig14197.3062.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=103bp
IFYIRIQYAQREQLTASVTKAKRTLHLSTHIYPTLHLSTHIYPTLMALHS
LLLRESNPSSQKGREKTKPSTTCYAEKSTKHTNAGSWFACLPYTTFEQNQ
AL*
back to top

mRNA from alignment at E-fasciculatus_F_contig14197:593..1150+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14197.3062.1 ID=mRNA_E-fasciculatus_F_contig14197.3062.1|Name=mRNA_E-fasciculatus_F_contig14197.3062.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=558bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14197:593..1150+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTTTTTACATCCGGATACAATATGCTCAAAGAGAACAGCTTACGGCATC
TGTTACCAAGGCGAAGAGAACCCTGCACCTATCTACCCACATCTACCCTA
CCCTGCACCTATCTACCCACATCTACCCTACCCTGATGGCTCTGCACTCG
TTACTTTTAAGAGAATCCAACCCGTCCTCCCAAAAAGGGAGAGAGAAAAC
AAAACCTTCCACAACATGTTATGCAGAGAAGAGCACGAAACACACCAACG
CTGGTTCATGGTTCGCTTGCCTGCCGTACACAACTTTTGAGCAGAACCAG
GCGCTCTGATATTGATGGCCGCCTATGCGCCCTGCAAACTAGGCAACATT
CAAAAGGCATTTACACAGCAGCAGTTCCTTTTGTCTCGATCTCTGCGTCA
CTCATGGCCTAATGTCTTGATCTCGTCTAATGTCTTGATCTCGTCTCCCT
GCTCGGCCCTGCCCTGCCCACCACTGCAGTGCCAATTGCCTCCGCAAGGA
CACCCTCCCCCCCATCCCGGCCATGGAAGCCCAACCTTCCGGGGCCGGCC
ATCCAAAC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14197:593..1150+

>mRNA_E-fasciculatus_F_contig14197.3062.1 ID=mRNA_E-fasciculatus_F_contig14197.3062.1|Name=mRNA_E-fasciculatus_F_contig14197.3062.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=618bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14197:593..1150+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATTTTTTACATCCGGATACAATATGCTCAAAGAGAACAGCTTACGGCATC
TGTTACCAAGGCGAAGAGAACCCTGCACCTATCTACCCACATCTACCCTA
CCCTGCACCTATCTACCCACATCTACCCTACCCTGATGGCTCTGCACTCG
TTACTTTTAAGAGAATCCAACCCGTCCTCCCAAAAAGGGAGAGAGAAAAC
AAAACCTTCCACAACATGTTATGCAGAGAAGAGCACGAAACACACCAACG
CTGGTTCATGGTTCGCTTGCCTGCCGTACACAACTTTTGAGCAGAACCAG
GCGCTCTGAATTTTTTACATCCGGATACAATATGCTCAAAGAGAACAGCT
TACGGCATCTGTTACCAAGGCGAAGAGAACCCTGCACCTATCTACCCACA
TCTACCCTACCCTGCACCTATCTACCCACATCTACCCTACCCTGATGGCT
CTGCACTCGTTACTTTTAAGAGAATCCAACCCGTCCTCCCAAAAAGGGAG
AGAGAAAACAAAACCTTCCACAACATGTTATGCAGAGAAGAGCACGAAAC
ACACCAACGCTGGTTCATGGTTCGCTTGCCTGCCGTACACAACTTTTGAG
CAGAACCAGGCGCTCTGA
back to top