mRNA_E-fasciculatus_F_contig14197.3063.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14197.3063.1
Unique NamemRNA_E-fasciculatus_F_contig14197.3063.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14197.3063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14197contigE-fasciculatus_F_contig14197:1266..1977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927909.776478-CDS-E-fasciculatus_F_contig14197:1265..14591622927909.776478-CDS-E-fasciculatus_F_contig14197:1265..1459Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14197 1266..1459 -
1695995747.7644947-CDS-E-fasciculatus_F_contig14197:1265..14591695995747.7644947-CDS-E-fasciculatus_F_contig14197:1265..1459Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14197 1266..1459 -
1622927909.792246-CDS-E-fasciculatus_F_contig14197:1883..19771622927909.792246-CDS-E-fasciculatus_F_contig14197:1883..1977Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14197 1884..1977 -
1695995747.7752578-CDS-E-fasciculatus_F_contig14197:1883..19771695995747.7752578-CDS-E-fasciculatus_F_contig14197:1883..1977Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14197 1884..1977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14197.3063.1prot_E-fasciculatus_F_contig14197.3063.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14197 1266..1977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14197.3063.1

>prot_E-fasciculatus_F_contig14197.3063.1 ID=prot_E-fasciculatus_F_contig14197.3063.1|Name=mRNA_E-fasciculatus_F_contig14197.3063.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=96bp
GEDSSVCERTSTVRTYRRHRSCSGGRWSTGEAGDGGPALGHFDEYTTEGF
LPLPPPSKPKTIPPPPQATGSNVVGVLTGAPCRRLHRGKEFHRERE
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mRNA from alignment at E-fasciculatus_F_contig14197:1266..1977-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14197.3063.1 ID=mRNA_E-fasciculatus_F_contig14197.3063.1|Name=mRNA_E-fasciculatus_F_contig14197.3063.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=712bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14197:1266..1977- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGAAGACAGCAGTGTGTGTGAACGAACATCGACGGTCCGAACCTACAG
ACGGCACAGGTCATGCTCTGGAGGTCGATGGAGCACCGGCGAAGGTGAGC
GGCACTACTGCTGGTATCTCTCTAGCCTTGGTCTTCACGCTTGCTTGCAG
TCGGGATGTGCGGGTGTCGGGATGTGGTGGGATGCAAGGGGGCGCTTTCC
TTTCGTATCGCAAAATCGAGGAGAGCCCCAAGCTCACTAGTGTAGGAGAG
CCACAAGCTCACTAGTGTAGCTCAACGAGAAGGGCGTCGTTTCGCTGATT
CGCCCGGGTTGCTTGGGTTGTTGTTGCGCTTGGTCATATTTCTCTGCGGT
GTACTGTACCCCCAGTAACAGTAACATGACGCTCACTGTCTCCCGCCTCT
CGTTCTCTCGCACGCCATTTTCCCACCGACCACCCCTGTGTTCGACCACC
CCTGTGTTCGACCACCCCTGTGTTCGTGCCCTCTGTGCCCTCTGTCAACC
TTCTTGCGCTATTTCAAGCCGGCGACGGTGGACCCGCCCTGGGTCATTTC
GACGAGTACACCACTGAGGGTTTCCTCCCCCTGCCACCCCCGTCAAAGCC
AAAAACGATACCACCTCCACCTCAAGCAACCGGCAGCAATGTCGTAGGCG
TTTTGACCGGTGCCCCTTGCCGGCGGCTCCATCGGGGAAAGGAGTTCCAT
CGGGAAAGGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14197:1266..1977-

>mRNA_E-fasciculatus_F_contig14197.3063.1 ID=mRNA_E-fasciculatus_F_contig14197.3063.1|Name=mRNA_E-fasciculatus_F_contig14197.3063.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14197:1266..1977- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGAAGACAGCAGTGTGTGTGAACGAACATCGACGGTCCGAACCTACAG
ACGGCACAGGTCATGCTCTGGAGGTCGATGGAGCACCGGCGAAGGGCGAA
GACAGCAGTGTGTGTGAACGAACATCGACGGTCCGAACCTACAGACGGCA
CAGGTCATGCTCTGGAGGTCGATGGAGCACCGGCGAAGCCGGCGACGGTG
GACCCGCCCTGGGTCATTTCGACGAGTACACCACTGAGGGTTTCCTCCCC
CTGCCACCCCCGTCAAAGCCAAAAACGATACCACCTCCACCTCAAGCAAC
CGGCAGCAATGTCGTAGGCGTTTTGACCGGTGCCCCTTGCCGGCGGCTCC
ATCGGGGAAAGGAGTTCCATCGGGAAAGGGAGCCGGCGACGGTGGACCCG
CCCTGGGTCATTTCGACGAGTACACCACTGAGGGTTTCCTCCCCCTGCCA
CCCCCGTCAAAGCCAAAAACGATACCACCTCCACCTCAAGCAACCGGCAG
CAATGTCGTAGGCGTTTTGACCGGTGCCCCTTGCCGGCGGCTCCATCGGG
GAAAGGAGTTCCATCGGGAAAGGGAG
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