prot_E-fasciculatus_F_contig14182.3055.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig14182.3055.1
Unique Nameprot_E-fasciculatus_F_contig14182.3055.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length76
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14182.3055.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 6.570e-22
Identity = 53/76 (69.74%), Postives = 56/76 (73.68%), Query Frame = 0 
Query:    1 NAALDACGKAGRVKEALGLMRDARSSGIELDVVSYNCAIPACVAGGDWELALSMIREMEAEYGIEPNHITYQAAIK 76
            NAALDACGKAGRV+EALGLMRDAR+SGIELDVVS                    IREMEAEYGI+PNHITYQAAIK
Sbjct:  163 NAALDACGKAGRVQEALGLMRDARASGIELDVVSXXXXXXXXXXXXXXXXXXXXIREMEAEYGIKPNHITYQAAIK 238
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BLAST of mRNA_E-fasciculatus_F_contig14182.3055.1 vs. uniprot
Match: A0A813KQZ9_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KQZ9_POLGL)

HSP 1 Score: 51.2 bits (121), Expect = 1.160e-5
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 0 
Query:    7 CGKAGRVKEALGLMRDARSSGIELDVVSYNCAIPACVAGGDWELALSMIREMEAEYGIEPNHITYQAA 74
            C K  R ++ LGL+RDAR +G+ELDV + N  +  C A G W  AL ++R +    G+ P  ++Y AA
Sbjct:   14 CAKQRRWQQGLGLLRDARKAGLELDVAALNAGL--CCASG-WVAALELLRGLRGA-GLRPTEVSYGAA 77
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BLAST of mRNA_E-fasciculatus_F_contig14182.3055.1 vs. uniprot
Match: A0A813FGE0_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FGE0_POLGL)

HSP 1 Score: 51.2 bits (121), Expect = 1.170e-5
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 0 
Query:    7 CGKAGRVKEALGLMRDARSSGIELDVVSYNCAIPACVAGGDWELALSMIREMEAEYGIEPNHITYQAA 74
            C K  R ++ LGL+RDAR +G+ELDV + N  +  C A G W  AL ++R +    G+ P  ++Y AA
Sbjct:  115 CAKQRRWQQGLGLLRDARKAGLELDVAALNAGL--CCASG-WVAALELLRGLRGA-GLRPTEVSYGAA 178
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BLAST of mRNA_E-fasciculatus_F_contig14182.3055.1 vs. uniprot
Match: A0A813HVC5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HVC5_POLGL)

HSP 1 Score: 51.2 bits (121), Expect = 1.200e-5
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 0 
Query:    7 CGKAGRVKEALGLMRDARSSGIELDVVSYNCAIPACVAGGDWELALSMIREMEAEYGIEPNHITYQAA 74
            C K  R ++ LGL+RDAR +G+ELDV + N  +  C A G W  AL ++R +    G+ P  ++Y AA
Sbjct:  651 CAKQRRWQQGLGLLRDARKAGLELDVAALNAGL--CCASG-WVAALELLRGLRGA-GLRPTEVSYGAA 714
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14182.3055.1 vs. uniprot
Match: A0A813EYD2_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EYD2_POLGL)

HSP 1 Score: 50.8 bits (120), Expect = 1.610e-5
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 0 
Query:    7 CGKAGRVKEALGLMRDARSSGIELDVVSYNCAIPACVAGGDWELALSMIREMEAEYGIEPNHITYQAA 74
            C K  R ++ LGL+RDAR +G+ELDV   N  +  C A G W  AL ++R +    G+ P  ++Y AA
Sbjct:  197 CAKQRRWQQGLGLLRDARKAGLELDVAELNAGL--CCASG-WVAALELLRGLRGA-GLRPTEVSYGAA 260
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14182.3055.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G0M5_ECTSI6.570e-2269.74PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
A0A813KQZ9_POLGL1.160e-541.18Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A813FGE0_POLGL1.170e-541.18Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813HVC5_POLGL1.200e-541.18Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813EYD2_POLGL1.610e-541.18Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 1..32
e-value: 3.6E-6
score: 24.8
coord: 33..67
e-value: 1.2E-7
score: 29.5
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 19..75
e-value: 1.9E-9
score: 37.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 31..66
score: 8.955
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..30
score: 9.021
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..76
e-value: 5.0E-21
score: 76.8
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14182contigE-fasciculatus_F_contig14182:1837..2064 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14182.3055.1mRNA_E-fasciculatus_F_contig14182.3055.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig14182 1837..2064 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig14182.3055.1 ID=prot_E-fasciculatus_F_contig14182.3055.1|Name=mRNA_E-fasciculatus_F_contig14182.3055.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=76bp
NAALDACGKAGRVKEALGLMRDARSSGIELDVVSYNCAIPACVAGGDWEL
ALSMIREMEAEYGIEPNHITYQAAIK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat