mRNA_E-fasciculatus_F_contig14182.3055.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14182.3055.1
Unique NamemRNA_E-fasciculatus_F_contig14182.3055.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14182.3055.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 6.570e-22
Identity = 53/76 (69.74%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 NAALDACGKAGRVKEALGLMRDARSSGIELDVVSYNCAIPACVAGGDWELALSMIREMEAEYGIEPNHITYQAAIK 228
            NAALDACGKAGRV+EALGLMRDAR+SGIELDVVS                    IREMEAEYGI+PNHITYQAAIK
Sbjct:  163 NAALDACGKAGRVQEALGLMRDARASGIELDVVSXXXXXXXXXXXXXXXXXXXXIREMEAEYGIKPNHITYQAAIK 238
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BLAST of mRNA_E-fasciculatus_F_contig14182.3055.1 vs. uniprot
Match: A0A813KQZ9_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KQZ9_POLGL)

HSP 1 Score: 51.2 bits (121), Expect = 1.160e-5
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:   19 CGKAGRVKEALGLMRDARSSGIELDVVSYNCAIPACVAGGDWELALSMIREMEAEYGIEPNHITYQAA 222
            C K  R ++ LGL+RDAR +G+ELDV + N  +  C A G W  AL ++R +    G+ P  ++Y AA
Sbjct:   14 CAKQRRWQQGLGLLRDARKAGLELDVAALNAGL--CCASG-WVAALELLRGLRGA-GLRPTEVSYGAA 77
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BLAST of mRNA_E-fasciculatus_F_contig14182.3055.1 vs. uniprot
Match: A0A813FGE0_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FGE0_POLGL)

HSP 1 Score: 51.2 bits (121), Expect = 1.170e-5
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:   19 CGKAGRVKEALGLMRDARSSGIELDVVSYNCAIPACVAGGDWELALSMIREMEAEYGIEPNHITYQAA 222
            C K  R ++ LGL+RDAR +G+ELDV + N  +  C A G W  AL ++R +    G+ P  ++Y AA
Sbjct:  115 CAKQRRWQQGLGLLRDARKAGLELDVAALNAGL--CCASG-WVAALELLRGLRGA-GLRPTEVSYGAA 178
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BLAST of mRNA_E-fasciculatus_F_contig14182.3055.1 vs. uniprot
Match: A0A813HVC5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HVC5_POLGL)

HSP 1 Score: 51.2 bits (121), Expect = 1.200e-5
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:   19 CGKAGRVKEALGLMRDARSSGIELDVVSYNCAIPACVAGGDWELALSMIREMEAEYGIEPNHITYQAA 222
            C K  R ++ LGL+RDAR +G+ELDV + N  +  C A G W  AL ++R +    G+ P  ++Y AA
Sbjct:  651 CAKQRRWQQGLGLLRDARKAGLELDVAALNAGL--CCASG-WVAALELLRGLRGA-GLRPTEVSYGAA 714
[Close]
BLAST of mRNA_E-fasciculatus_F_contig14182.3055.1 vs. uniprot
Match: A0A813EYD2_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813EYD2_POLGL)

HSP 1 Score: 50.8 bits (120), Expect = 1.610e-5
Identity = 28/68 (41.18%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   19 CGKAGRVKEALGLMRDARSSGIELDVVSYNCAIPACVAGGDWELALSMIREMEAEYGIEPNHITYQAA 222
            C K  R ++ LGL+RDAR +G+ELDV   N  +  C A G W  AL ++R +    G+ P  ++Y AA
Sbjct:  197 CAKQRRWQQGLGLLRDARKAGLELDVAELNAGL--CCASG-WVAALELLRGLRGA-GLRPTEVSYGAA 260
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14182.3055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G0M5_ECTSI6.570e-2269.74PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
A0A813KQZ9_POLGL1.160e-541.18Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A813FGE0_POLGL1.170e-541.18Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813HVC5_POLGL1.200e-541.18Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A813EYD2_POLGL1.610e-541.18Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14182contigE-fasciculatus_F_contig14182:1837..2064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue1.7e-18
Seed eggNOG ortholog2880.D7G0M5
KEGG koko:K17710
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-07_001540.1
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927908.874549-CDS-E-fasciculatus_F_contig14182:1836..20641622927908.874549-CDS-E-fasciculatus_F_contig14182:1836..2064Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14182 1837..2064 -
1695995747.398766-CDS-E-fasciculatus_F_contig14182:1836..20641695995747.398766-CDS-E-fasciculatus_F_contig14182:1836..2064Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14182 1837..2064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14182.3055.1prot_E-fasciculatus_F_contig14182.3055.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14182 1837..2064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14182.3055.1

>prot_E-fasciculatus_F_contig14182.3055.1 ID=prot_E-fasciculatus_F_contig14182.3055.1|Name=mRNA_E-fasciculatus_F_contig14182.3055.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=76bp
NAALDACGKAGRVKEALGLMRDARSSGIELDVVSYNCAIPACVAGGDWEL
ALSMIREMEAEYGIEPNHITYQAAIK
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mRNA from alignment at E-fasciculatus_F_contig14182:1837..2064-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14182.3055.1 ID=mRNA_E-fasciculatus_F_contig14182.3055.1|Name=mRNA_E-fasciculatus_F_contig14182.3055.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=228bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14182:1837..2064- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACGCTGCGCTCGACGCGTGCGGCAAGGCGGGGCGGGTCAAGGAAGCCCT
GGGTCTCATGAGGGACGCGCGGTCGTCGGGGATAGAGCTCGACGTCGTGA
GCTACAACTGCGCTATCCCGGCCTGCGTCGCGGGGGGGGACTGGGAGCTG
GCCCTGAGCATGATTCGGGAGATGGAGGCCGAGTACGGCATCGAGCCGAA
TCACATCACCTACCAGGCGGCGATAAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14182:1837..2064-

>mRNA_E-fasciculatus_F_contig14182.3055.1 ID=mRNA_E-fasciculatus_F_contig14182.3055.1|Name=mRNA_E-fasciculatus_F_contig14182.3055.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=456bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14182:1837..2064- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACGCTGCGCTCGACGCGTGCGGCAAGGCGGGGCGGGTCAAGGAAGCCCT
GGGTCTCATGAGGGACGCGCGGTCGTCGGGGATAGAGCTCGACGTCGTGA
GCTACAACTGCGCTATCCCGGCCTGCGTCGCGGGGGGGGACTGGGAGCTG
GCCCTGAGCATGATTCGGGAGATGGAGGCCGAGTACGGCATCGAGCCGAA
TCACATCACCTACCAGGCGGCGATAAAGAACGCTGCGCTCGACGCGTGCG
GCAAGGCGGGGCGGGTCAAGGAAGCCCTGGGTCTCATGAGGGACGCGCGG
TCGTCGGGGATAGAGCTCGACGTCGTGAGCTACAACTGCGCTATCCCGGC
CTGCGTCGCGGGGGGGGACTGGGAGCTGGCCCTGAGCATGATTCGGGAGA
TGGAGGCCGAGTACGGCATCGAGCCGAATCACATCACCTACCAGGCGGCG
ATAAAG
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