mRNA_E-fasciculatus_F_contig14180.3054.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: A0A6H5JJN5_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE) HSP 1 Score: 429 bits (1103), Expect = 2.720e-139 Identity = 204/214 (95.33%), Postives = 212/214 (99.07%), Query Frame = 1
Query: 1 KELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVAT 642
KELYLDS+IKACL+WKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLL GFYG GPQG+ASRGPRP+GGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIG+QFRQGRQEDAHEFLRHLLDKMVDCYLKRKG+KSSAP+RLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSI+VALRRFVAT
Sbjct: 245 KELYLDSKIKACLQWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYGHGPQGIASRGPRPMGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGRQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGVKSSAPSRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIEVALRRFVAT 458
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: D8LD98_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD98_ECTSI) HSP 1 Score: 243 bits (621), Expect = 1.540e-72 Identity = 122/222 (54.95%), Postives = 157/222 (70.72%), Query Frame = 1
Query: 4 ELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLG--AISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDL----SRGV----RSIDVALRRFVA 639
ELY +S+++ L W+ ++G GL N+GNTC+LN+ LQCLSY+PPLAQHLL G Y QG S P G +F + +IL AM++ Q+HQ + AI P+ NLR IG++FR+GRQEDAHEFLRHL+DKM YL+R+G+ APNRLAETTPI+R+FGGYLRS+LKC++CG CSDTFDPFMDL+M++ S GV RS+ ALRRF A
Sbjct: 113 ELYPESQVRPNLTWRWPCQIGVGLENMGNTCYLNSILQCLSYVPPLAQHLLNGSYSQGSHATCSESPFSFNGSTDFCEDDILGAMQKLVGQIHQTKSGSAEQQAIRPRTFSDNLRKIGEKFRRGRQEDAHEFLRHLVDKMAGSYLERRGVDPFAPNRLAETTPIHRVFGGYLRSQLKCSECGFCSDTFDPFMDLAMNVEKVDSSGVAMNERSLQAALRRFTA 334
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: A0A835YLY7_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY7_9STRA) HSP 1 Score: 204 bits (518), Expect = 1.500e-61 Identity = 101/201 (50.25%), Postives = 137/201 (68.16%), Query Frame = 1
Query: 37 LRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVA 639
L W+++ ++GPGL+NLGNTCFLNATLQCL Y PPL QHLL YG + R + V AA+ + + AISPK +V N+R IGKQFR GRQEDAHEFLR L+D M + L+R G+K++AP+RL ETT INR+FGGYLR++++CTKC +CS+T++ +MDLS+D+ + S++ AL+RF A
Sbjct: 1 LEWRELSKVGPGLQNLGNTCFLNATLQCLLYCPPLVQHLLNHKYGAPAAAQQAHHGRA-----QLNLVSNTAAVARSS---------AYSAISPKTIVANIRTIGKQFRPGRQEDAHEFLRKLVDSMAEAILRRHGVKANAPHRLDETTAINRVFGGYLRNQVQCTKCRYCSNTYELYMDLSLDMVGNISSLEDALKRFQA 187
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: A0A6H5JKG0_9PHAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG0_9PHAE) HSP 1 Score: 215 bits (547), Expect = 1.910e-61 Identity = 125/283 (44.17%), Postives = 159/283 (56.18%), Query Frame = 1
Query: 4 ELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAME--------QHTK--------------------QVHQGQFTGLG--AISPKVLVQNLRMIGKQFRQGRQ---------------------------------EDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDL----SRGV----RSIDVALRRFVA 639
ELY +S+++ L W+ ++G GL N+GNTC+LN+ LQCLSY+PPLAQHLL G Y QG Q S P PL G +F + +IL AM+ QH Q+HQ + AI P+ NLR IG++FR+GRQ EDAHE LRHL+DKM YL+R+G+ A NRL ETTPI+R+FGGYLRS+L+C+KCG CSDTFDPFMDL+M++ SRGV RS+ ALRRF A
Sbjct: 113 ELYPESQVRPNLTWRWPCQIGVGLENMGNTCYLNSILQCLSYVPPLAQHLLNGGYSQGSQATCSESPLPLNGSTDFGEDDILGAMQKLVGQVLLQHQMSARVLYLSALLGISRDLPLFQIHQTKSGSADQQAIRPRTFSDNLRKIGEKFRRGRQVMNLASRTRPISLRCFSFLPDQRTSGDATPYGQEDAHELLRHLVDKMAGSYLERRGVDPFASNRLGETTPIHRVFGGYLRSQLECSKCGFCSDTFDPFMDLAMNVEKVDSRGVAMKERSLQAALRRFTA 395
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: K8ZBR0_NANGC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBR0_NANGC) HSP 1 Score: 194 bits (494), Expect = 6.490e-56 Identity = 110/234 (47.01%), Postives = 149/234 (63.68%), Query Frame = 1
Query: 1 KELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQH------------LLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGA---------ISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVA 639
K ++ +S+I + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+ +L GQG +G G + GG+ + +++A M HT G G G ISPK +V NL+ + + FR GRQEDAHEFLRHLLD + L+ +KS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++ V ++ AL RF A
Sbjct: 114 KGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEERVPSVLSPGAGQGHRG----GGQARGGWLGLVR-DLIANM--HTGSGAGGGDRGDGLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTA 340
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: W7TEV7_9STRA (Ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEV7_9STRA) HSP 1 Score: 194 bits (494), Expect = 9.190e-54 Identity = 110/234 (47.01%), Postives = 149/234 (63.68%), Query Frame = 1
Query: 1 KELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQH------------LLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGA---------ISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVA 639
K ++ +S+I + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+ +L GQG +G G + GG+ + +++A M HT G G G ISPK +V NL+ + + FR GRQEDAHEFLRHLLD + L+ +KS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++ V ++ AL RF A
Sbjct: 114 KGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEERVPSVLSPGAGQGHRG----GGQARGGWLGLVR-DLIANM--HTGSGAGGGDRGDGLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTA 340
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: A0A4D9CS17_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS17_9STRA) HSP 1 Score: 193 bits (490), Expect = 2.960e-53 Identity = 106/230 (46.09%), Postives = 145/230 (63.04%), Query Frame = 1
Query: 1 KELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGP--------RPLGGFREFTKVEILAAMEQHTKQVHQGQFT---------GLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVA 639
K ++ +S+I + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+ L + V S G + GG+ + +++A M HT G ISPK +V NL+ + + FR GRQEDAHEFLRHLLD + + L+ +KS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++ V ++ AL RF A
Sbjct: 114 KGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEESVPSVLSPGAGQGHRGGGQARGGWLGLVR-DLIANM--HTGXXXXXXXXXXXLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQNGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTA 340
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: A0A7S1CK59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CK59_9STRA) HSP 1 Score: 174 bits (441), Expect = 1.100e-51 Identity = 89/202 (44.06%), Postives = 128/202 (63.37%), Query Frame = 1
Query: 31 ACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFV 636
A +W +V +G GL NLGNTCFLN+ LQC++Y+PPLAQ+L G + P TK E+ + V + A++PK +V L + + R+GRQEDAHEFLR LLD + L+ +K +A RLAETT ++R+FGGYLRS+++C++CGH S+TFDPF+DLS++L++GVR++ AL+ FV
Sbjct: 1 AMRKWSRVEPIGCGLANLGNTCFLNSVLQCVAYVPPLAQYLQAGAHASAPH---------------HTKGEVCLWCIVERQCVEMRRRGPRSAMAPKGVVTRLSVFARHLRRGRQEDAHEFLRCLLDGLHKNELRHHRLKETAAGRLAETTAVHRVFGGYLRSQVRCSECGHNSNTFDPFLDLSLELTKGVRTLRQALKHFV 187
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: A0A7R9YFU1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFU1_9STRA) HSP 1 Score: 157 bits (397), Expect = 7.510e-44 Identity = 89/205 (43.41%), Postives = 121/205 (59.02%), Query Frame = 1
Query: 25 IKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVA 639
I+ LRW++ GPGL NLGNTCF NATLQ L+ L P Q+L ++ RG ++LA + ++ G+ A +PK ++ NLR I K FRQGRQEDAHEFLRHLLD + L R+G+K + R ET+ I RIFGGYLRS+LKC+ C C T+D F+DLS++++ + S+ AL+ F A
Sbjct: 38 IQQLLRWRKPRGSGPGLVNLGNTCFANATLQSLASLAPFVQYL---------DDLSPRGD------------DLLAVVNGFFQRF--GRVAPGSAFAPKQVIGNLRRIAKSFRQGRQEDAHEFLRHLLDGLHRACLVREGLKPTDCGRREETSAIYRIFGGYLRSQLKCSNCAFCLHTYDAFLDLSLEITGKISSLPSALQMFQA 219
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: A0A7S1U5Y3_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5Y3_9STRA) HSP 1 Score: 159 bits (401), Expect = 5.910e-43 Identity = 91/207 (43.96%), Postives = 121/207 (58.45%), Query Frame = 1
Query: 37 LRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRP-----LGGF-REFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVA 639
LRW++V GPGL NLGNTCFLN+T+QCL+ LPPL Q+L + V G R +GGF R+F T A +PK +V NLR I + F+ GRQEDAHE+LR LLD + L R G+K +A R ET+ ++R+FGGYLRS+LKC C +CS+T+D +DLS+++ V S+ AL F A
Sbjct: 50 LRWERVRGPGPGLSNLGNTCFLNSTMQCLAALPPLVQYL---------ESVGEDGGRNDLLGLIGGFMRKFGG-------------------TRSNAFAPKAIVGNLRRISRNFKLGRQEDAHEYLRQLLDGLHKSCLMRSGLKPTACGRREETSAMHRLFGGYLRSQLKCNDCAYCSNTYDACLDLSLEIHGKVSSLPSALEAFQA 228 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14180.3054.1 >prot_E-fasciculatus_F_contig14180.3054.1 ID=prot_E-fasciculatus_F_contig14180.3054.1|Name=mRNA_E-fasciculatus_F_contig14180.3054.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=214bp KELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHback to top mRNA from alignment at E-fasciculatus_F_contig14180:1..3349- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14180.3054.1 ID=mRNA_E-fasciculatus_F_contig14180.3054.1|Name=mRNA_E-fasciculatus_F_contig14180.3054.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3349bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14180:1..3349- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14180:1..3349- >mRNA_E-fasciculatus_F_contig14180.3054.1 ID=mRNA_E-fasciculatus_F_contig14180.3054.1|Name=mRNA_E-fasciculatus_F_contig14180.3054.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1284bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14180:1..3349- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |