mRNA_E-fasciculatus_F_contig14180.3054.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14180.3054.1
Unique NamemRNA_E-fasciculatus_F_contig14180.3054.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: A0A6H5JJN5_9PHAE (USP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJN5_9PHAE)

HSP 1 Score: 429 bits (1103), Expect = 2.720e-139
Identity = 204/214 (95.33%), Postives = 212/214 (99.07%), Query Frame = 1
Query:    1 KELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVAT 642
            KELYLDS+IKACL+WKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLL GFYG GPQG+ASRGPRP+GGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIG+QFRQGRQEDAHEFLRHLLDKMVDCYLKRKG+KSSAP+RLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSI+VALRRFVAT
Sbjct:  245 KELYLDSKIKACLQWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLNGFYGHGPQGIASRGPRPMGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGRQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGVKSSAPSRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIEVALRRFVAT 458          
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: D8LD98_ECTSI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD98_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 1.540e-72
Identity = 122/222 (54.95%), Postives = 157/222 (70.72%), Query Frame = 1
Query:    4 ELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLG--AISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDL----SRGV----RSIDVALRRFVA 639
            ELY +S+++  L W+   ++G GL N+GNTC+LN+ LQCLSY+PPLAQHLL G Y QG     S  P    G  +F + +IL AM++   Q+HQ +       AI P+    NLR IG++FR+GRQEDAHEFLRHL+DKM   YL+R+G+   APNRLAETTPI+R+FGGYLRS+LKC++CG CSDTFDPFMDL+M++    S GV    RS+  ALRRF A
Sbjct:  113 ELYPESQVRPNLTWRWPCQIGVGLENMGNTCYLNSILQCLSYVPPLAQHLLNGSYSQGSHATCSESPFSFNGSTDFCEDDILGAMQKLVGQIHQTKSGSAEQQAIRPRTFSDNLRKIGEKFRRGRQEDAHEFLRHLVDKMAGSYLERRGVDPFAPNRLAETTPIHRVFGGYLRSQLKCSECGFCSDTFDPFMDLAMNVEKVDSSGVAMNERSLQAALRRFTA 334          
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: A0A835YLY7_9STRA (USP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY7_9STRA)

HSP 1 Score: 204 bits (518), Expect = 1.500e-61
Identity = 101/201 (50.25%), Postives = 137/201 (68.16%), Query Frame = 1
Query:   37 LRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVA 639
            L W+++ ++GPGL+NLGNTCFLNATLQCL Y PPL QHLL   YG       +   R      +   V   AA+ + +            AISPK +V N+R IGKQFR GRQEDAHEFLR L+D M +  L+R G+K++AP+RL ETT INR+FGGYLR++++CTKC +CS+T++ +MDLS+D+   + S++ AL+RF A
Sbjct:    1 LEWRELSKVGPGLQNLGNTCFLNATLQCLLYCPPLVQHLLNHKYGAPAAAQQAHHGRA-----QLNLVSNTAAVARSS---------AYSAISPKTIVANIRTIGKQFRPGRQEDAHEFLRKLVDSMAEAILRRHGVKANAPHRLDETTAINRVFGGYLRNQVQCTKCRYCSNTYELYMDLSLDMVGNISSLEDALKRFQA 187          
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: A0A6H5JKG0_9PHAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG0_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.910e-61
Identity = 125/283 (44.17%), Postives = 159/283 (56.18%), Query Frame = 1
Query:    4 ELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAME--------QHTK--------------------QVHQGQFTGLG--AISPKVLVQNLRMIGKQFRQGRQ---------------------------------EDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDL----SRGV----RSIDVALRRFVA 639
            ELY +S+++  L W+   ++G GL N+GNTC+LN+ LQCLSY+PPLAQHLL G Y QG Q   S  P PL G  +F + +IL AM+        QH                      Q+HQ +       AI P+    NLR IG++FR+GRQ                                 EDAHE LRHL+DKM   YL+R+G+   A NRL ETTPI+R+FGGYLRS+L+C+KCG CSDTFDPFMDL+M++    SRGV    RS+  ALRRF A
Sbjct:  113 ELYPESQVRPNLTWRWPCQIGVGLENMGNTCYLNSILQCLSYVPPLAQHLLNGGYSQGSQATCSESPLPLNGSTDFGEDDILGAMQKLVGQVLLQHQMSARVLYLSALLGISRDLPLFQIHQTKSGSADQQAIRPRTFSDNLRKIGEKFRRGRQVMNLASRTRPISLRCFSFLPDQRTSGDATPYGQEDAHELLRHLVDKMAGSYLERRGVDPFASNRLGETTPIHRVFGGYLRSQLECSKCGFCSDTFDPFMDLAMNVEKVDSRGVAMKERSLQAALRRFTA 395          
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: K8ZBR0_NANGC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBR0_NANGC)

HSP 1 Score: 194 bits (494), Expect = 6.490e-56
Identity = 110/234 (47.01%), Postives = 149/234 (63.68%), Query Frame = 1
Query:    1 KELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQH------------LLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGA---------ISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVA 639
            K ++ +S+I   + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+            +L    GQG +G    G +  GG+    + +++A M  HT     G   G G          ISPK +V NL+ + + FR GRQEDAHEFLRHLLD +    L+   +KS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++   V  ++ AL RF A
Sbjct:  114 KGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEERVPSVLSPGAGQGHRG----GGQARGGWLGLVR-DLIANM--HTGSGAGGGDRGDGLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTA 340          
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: W7TEV7_9STRA (Ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TEV7_9STRA)

HSP 1 Score: 194 bits (494), Expect = 9.190e-54
Identity = 110/234 (47.01%), Postives = 149/234 (63.68%), Query Frame = 1
Query:    1 KELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQH------------LLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGA---------ISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVA 639
            K ++ +S+I   + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+            +L    GQG +G    G +  GG+    + +++A M  HT     G   G G          ISPK +V NL+ + + FR GRQEDAHEFLRHLLD +    L+   +KS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++   V  ++ AL RF A
Sbjct:  114 KGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEERVPSVLSPGAGQGHRG----GGQARGGWLGLVR-DLIANM--HTGSGAGGGDRGDGLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQSGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTA 340          
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: A0A4D9CS17_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CS17_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.960e-53
Identity = 106/230 (46.09%), Postives = 145/230 (63.04%), Query Frame = 1
Query:    1 KELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGP--------RPLGGFREFTKVEILAAMEQHTKQVHQGQFT---------GLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVA 639
            K ++ +S+I   + W +V R+GPGL NLGNTCFLNATLQCL+YLPPLAQ+ L     +    V S G         +  GG+    + +++A M  HT                  G   ISPK +V NL+ + + FR GRQEDAHEFLRHLLD + +  L+   +KS+AP RLAETT ++RIFGGYLRS+++CT+CGHCS+T+D F+DLS+++   V  ++ AL RF A
Sbjct:  114 KGIFPESKIHPLMTWIRVERVGPGLYNLGNTCFLNATLQCLAYLPPLAQYFLSKKEEESVPSVLSPGAGQGHRGGGQARGGWLGLVR-DLIANM--HTGXXXXXXXXXXXLARREGGRSPISPKAIVGNLKALNRHFRVGRQEDAHEFLRHLLDALQNGCLQAARVKSNAPGRLAETTFVHRIFGGYLRSQVRCTQCGHCSNTYDNFLDLSLEIHGKVGRLEEALARFTA 340          
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: A0A7S1CK59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CK59_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.100e-51
Identity = 89/202 (44.06%), Postives = 128/202 (63.37%), Query Frame = 1
Query:   31 ACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFV 636
            A  +W +V  +G GL NLGNTCFLN+ LQC++Y+PPLAQ+L  G +   P                 TK E+        + V   +     A++PK +V  L +  +  R+GRQEDAHEFLR LLD +    L+   +K +A  RLAETT ++R+FGGYLRS+++C++CGH S+TFDPF+DLS++L++GVR++  AL+ FV
Sbjct:    1 AMRKWSRVEPIGCGLANLGNTCFLNSVLQCVAYVPPLAQYLQAGAHASAPH---------------HTKGEVCLWCIVERQCVEMRRRGPRSAMAPKGVVTRLSVFARHLRRGRQEDAHEFLRCLLDGLHKNELRHHRLKETAAGRLAETTAVHRVFGGYLRSQVRCSECGHNSNTFDPFLDLSLELTKGVRTLRQALKHFV 187          
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: A0A7R9YFU1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFU1_9STRA)

HSP 1 Score: 157 bits (397), Expect = 7.510e-44
Identity = 89/205 (43.41%), Postives = 121/205 (59.02%), Query Frame = 1
Query:   25 IKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVA 639
            I+  LRW++    GPGL NLGNTCF NATLQ L+ L P  Q+L           ++ RG             ++LA +    ++   G+     A +PK ++ NLR I K FRQGRQEDAHEFLRHLLD +    L R+G+K +   R  ET+ I RIFGGYLRS+LKC+ C  C  T+D F+DLS++++  + S+  AL+ F A
Sbjct:   38 IQQLLRWRKPRGSGPGLVNLGNTCFANATLQSLASLAPFVQYL---------DDLSPRGD------------DLLAVVNGFFQRF--GRVAPGSAFAPKQVIGNLRRIAKSFRQGRQEDAHEFLRHLLDGLHRACLVREGLKPTDCGRREETSAIYRIFGGYLRSQLKCSNCAFCLHTYDAFLDLSLEITGKISSLPSALQMFQA 219          
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Match: A0A7S1U5Y3_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5Y3_9STRA)

HSP 1 Score: 159 bits (401), Expect = 5.910e-43
Identity = 91/207 (43.96%), Postives = 121/207 (58.45%), Query Frame = 1
Query:   37 LRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQHLLKGFYGQGPQGVASRGPRP-----LGGF-REFTKVEILAAMEQHTKQVHQGQFTGLGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIKSSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRGVRSIDVALRRFVA 639
            LRW++V   GPGL NLGNTCFLN+T+QCL+ LPPL Q+L         + V   G R      +GGF R+F                     T   A +PK +V NLR I + F+ GRQEDAHE+LR LLD +    L R G+K +A  R  ET+ ++R+FGGYLRS+LKC  C +CS+T+D  +DLS+++   V S+  AL  F A
Sbjct:   50 LRWERVRGPGPGLSNLGNTCFLNSTMQCLAALPPLVQYL---------ESVGEDGGRNDLLGLIGGFMRKFGG-------------------TRSNAFAPKAIVGNLRRISRNFKLGRQEDAHEYLRQLLDGLHKSCLMRSGLKPTACGRREETSAMHRLFGGYLRSQLKCNDCAYCSNTYDACLDLSLEIHGKVSSLPSALEAFQA 228          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14180.3054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJN5_9PHAE2.720e-13995.33USP domain-containing protein n=2 Tax=Ectocarpus T... [more]
D8LD98_ECTSI1.540e-7254.95Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ecto... [more]
A0A835YLY7_9STRA1.500e-6150.25USP domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A6H5JKG0_9PHAE1.910e-6144.17Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ecto... [more]
K8ZBR0_NANGC6.490e-5647.01Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nann... [more]
W7TEV7_9STRA9.190e-5447.01Ubiquitin carboxyl-terminal hydrolase 36 n=1 Tax=N... [more]
A0A4D9CS17_9STRA2.960e-5346.09Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nann... [more]
A0A7S1CK59_9STRA1.100e-5144.06Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7R9YFU1_9STRA7.510e-4443.41Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
A0A7S1U5Y3_9STRA5.910e-4343.96Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14180contigE-fasciculatus_F_contig14180:1..3349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score438.7
Seed ortholog evalue1.5e-120
Seed eggNOG ortholog2880.D8LD97
KEGG koko:K11855
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0016787,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0101005,GO:0140096
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsKOG1865@1,KOG1865@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Exons5
Model size642
Cds size642
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14180.3054.1prot_E-fasciculatus_F_contig14180.3054.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14180 1..3349 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927908.7850082-CDS-E-fasciculatus_F_contig14180:0..1201622927908.7850082-CDS-E-fasciculatus_F_contig14180:0..120Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14180 1..120 -
1695995747.3321142-CDS-E-fasciculatus_F_contig14180:0..1201695995747.3321142-CDS-E-fasciculatus_F_contig14180:0..120Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14180 1..120 -
1622927908.804914-CDS-E-fasciculatus_F_contig14180:714..8611622927908.804914-CDS-E-fasciculatus_F_contig14180:714..861Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14180 715..861 -
1695995747.350808-CDS-E-fasciculatus_F_contig14180:714..8611695995747.350808-CDS-E-fasciculatus_F_contig14180:714..861Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14180 715..861 -
1622927908.8174877-CDS-E-fasciculatus_F_contig14180:1583..16821622927908.8174877-CDS-E-fasciculatus_F_contig14180:1583..1682Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14180 1584..1682 -
1695995747.3653574-CDS-E-fasciculatus_F_contig14180:1583..16821695995747.3653574-CDS-E-fasciculatus_F_contig14180:1583..1682Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14180 1584..1682 -
1622927908.8287034-CDS-E-fasciculatus_F_contig14180:2386..24881622927908.8287034-CDS-E-fasciculatus_F_contig14180:2386..2488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14180 2387..2488 -
1695995747.3777401-CDS-E-fasciculatus_F_contig14180:2386..24881695995747.3777401-CDS-E-fasciculatus_F_contig14180:2386..2488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14180 2387..2488 -
1622927908.840371-CDS-E-fasciculatus_F_contig14180:3175..33491622927908.840371-CDS-E-fasciculatus_F_contig14180:3175..3349Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14180 3176..3349 -
1695995747.3894339-CDS-E-fasciculatus_F_contig14180:3175..33491695995747.3894339-CDS-E-fasciculatus_F_contig14180:3175..3349Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14180 3176..3349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14180.3054.1

>prot_E-fasciculatus_F_contig14180.3054.1 ID=prot_E-fasciculatus_F_contig14180.3054.1|Name=mRNA_E-fasciculatus_F_contig14180.3054.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=214bp
KELYLDSRIKACLRWKQVHRMGPGLRNLGNTCFLNATLQCLSYLPPLAQH
LLKGFYGQGPQGVASRGPRPLGGFREFTKVEILAAMEQHTKQVHQGQFTG
LGAISPKVLVQNLRMIGKQFRQGRQEDAHEFLRHLLDKMVDCYLKRKGIK
SSAPNRLAETTPINRIFGGYLRSRLKCTKCGHCSDTFDPFMDLSMDLSRG
VRSIDVALRRFVAT
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mRNA from alignment at E-fasciculatus_F_contig14180:1..3349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14180.3054.1 ID=mRNA_E-fasciculatus_F_contig14180.3054.1|Name=mRNA_E-fasciculatus_F_contig14180.3054.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3349bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14180:1..3349- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGAGCTCTACCTCGACTCTCGAATCAAGGCATGTCTACGGTGGAAGCA GGTCCACAGGATGGGACCGGGGCTCCGCAATCTCGGCAACACCTGCTTCC TGAACGCCACGCTGCAGTGCCTGAGCTACCTTCCCCCGCTGGCCCAGCAC CTCCTCAAGGGGTTCTACGGTCAGGTGCGATTAACGCTTCATTTTGTCGA ACTCCTTTGAGGTGATTGCTGAAGGGCTTGGAGCCGTCTTTTCTGGGGCG GCTACTTTGCCATGCCTCTAAACGGGGGCGATTGGCATCCACCCCTGCCT GCAACACCTTCCGGTTCTAGACAAATGTTTTTTGTCGTGTGCATGTATTT TTGTCGCATAGGTTTCTGAGGTTTTGCTCTTCTTCCTCGGGTTGCCGATA TGGGGAGACACATAGTGGTCTTGCTCAAGAAAAGCAACAGAGAAAACGGT CTAAAATTTTACATCAGCCCTCCGAAATATTCTTGACGACGTATCACGCA TGTCACGCAGTACTCTGCGGTGCAATTCTCTACGATGGCCGTGTCTACTT CCGAGATTGAAATACACGTATCACGTGGTACTCAGCAGTTTATTTTTCCA GGGCCCCGGTAGCGACCCCTTTTTTTATAACACTACATTTGGCTTGCGGA CCCTTCGGGTCAATTTTTATTTTAGTGCACCTTTTTTTGGTAAGTTGGCC TGTGACCACGGGAATCGACCGCGTCAAGTGTTAGACTAGTACGGACAGAT GAAGGTGCTGAGTAGAGAGATCGAAACAGTTTTTAATGTGAAGAAGACAA CAACAACAACAACAACAACAACTGCATCGTCATCACGGATCACGGTCACA TACCTGGGCAGGGCCCCCAGGGGGTAGCTTCAAGGGGTCCCCGTCCATTG GGAGGCTTCCGGGAGTTCACCAAGGTGGAGATACTGGCGGCGATGGAGCA GCACACGAAGCAGGTGTGGTTGGGGGATGGGAGATGGGGCCTGACCCTTT TGGGTGTTTGTTTGTTGTTGATGTTGTTTTGGGTGTTCAAGGCGTTGTTG TTGGTGATTACGGTTCGCGGTGCCCCTTCGGCCCGGGGGGGGAAACGGTG TTTTTTTCTCGCACCTATTTCCAACGAAGACGGCCACCTCGCGGCCTGGT AGAGTCATACACGTGCTTTCAATCGCGCCGAGATTGGCGTCTTCCCATTG GTGAGCCGGTTAGCGTGGTCAACGCTAAGAATGAAAACACACACACACAT GGCACTATCGGTAGGACCCTATGCCGAGACTCGTGCTGTGTATGAATCGG CTTGTTGTTTTCATTGGTCCGCCGGTTTACTCTGTAGCACGGTCGATGTT AAGCAAAGGAAGCACGCAAGACACGCACGAAACCGCTTCACAAAGTCCCA GGAAGGGTTGCCCGCTGCTGGCCGCACTGAGGCTGGCGTATTCTGCATTT GTCAGGCGGTTAGCGCGGTCGACGCTGATAAAAATGACACGCGCACATAC ACGCGTATTCACGAAGGCGGAGGAAAAGAGAAGGAGTGATAATGGTACAT GCTACGGTATGCACCCTCTTTTGATTTACTCTGACTCTGTCGTGTGCTGT CGCCGTCTTTGATGTTGCTATTCACTCCGCACGGCATGCGAAATGGAACT CGGAACAATTATTTCAGGTGCACCAGGGGCAGTTCACGGGGCTAGGGGCG ATTAGCCCGAAGGTTTTGGTTCAGAACCTCCGTATGATCGGGAAGCAGTT TCGACAGGGAAGACAGGTGTGAGGAGGGAAGAAACGAAAGGTTATTCAAG GAGAACCAAAATCGCGCGTGGTTCAGTAGACTTTGGCTGTTGTGTTCTTG TGTTCTTGTGGCCGTTGTTGTCATGGTCGTCTTGATTGGGTGAATTTTTT TTTTTTTTATCACACCCTATGTGACCTCCATCGACTACAATACCTCCACG GCGTGTGTCTTCGTTTCGTCTTTCATGGTGGCGATGTGCTCTGGCTTGAT TTGGAACTAATTCTTGCGGTTGGGTCTGTGCGAAAATTATGAAGGAAACG TGAAAAACATCCCCAGGAGACCTGCCACTGCCGTATGTTTGGCAAGACAC CTTGCACGAAACATGAGACATGGGACTGGATGAATTGAAATTGTCCACGC GAGCGAATGGTTTGGGCGCTGTTTGCGCTGTGCTCCTGCCCCTCTCCAAA GCGCACTGTTGCCCGATGGACCCTATCTAGCGTATGCGTGTCCGCCTCTA TTGAAACAACAAACCCCGACAATGTTAACGCCAGCTGGTATCACTGATAT AGTTTAGTGTATAGGCTGAAACAGACTCAACACAAGGCCCAGTTACCAGC CGGCTTCCCTCCACTCACTGCAAAGACTTCAGCACATCGCTTTCGACTGT GGTAATGTGCTTAAATGCATATTTTCTAGCAACCCCCGATATCGTTAACC TTCACGGCTAACTCGGACGGCAACGCAACGACGAACAGGAGGACGCCCAC GAGTTCTTACGGCACCTCCTGGACAAGATGGTGGACTGCTACCTCAAGCG CAAGGGGATCAAGTCGTCCGCGCCCAACAGGCTGGCGGAGACGACGCCGA TCAACCGCATCTTCGGGGGATACCTCCGCAGCCGGGTGCGTACCGCGAGG CTGGATGCGTAATACGGTAGATAACACACCCTTTGCCGGACCGATTTTCG TTTCGAAGCCCCCGTTGTTCAGTCTGCGTCCCCCCCAAGAGAGAGGCGAC GGATGCCCCAAAGAATGGGCGGCGTTTGAGCAGCACTGTTTATAGTTGTC GTCGAGAGCGGTTTCTGGAAGGGCATTACCCTACCCTACCCTTTGATTTG GGCACCCTCTTTGTCGTGGAGTGTTGAAGCTATGAAGGTCGTTCGGTCCA GGGGGGGAGGGGTGTACTCACAATTCGTGCATGCCGTAGTCGTTAGACCA TTGACCTCGTGGTCCAGGCGGTTGGTCCAGGGGCAGTGGTATTGTTTTTT TACACCTATGGTACGCAGTAGTCCTCCTCCTAAGCATGATGTTATGGTAT TTCGACCTTGACTTGGAAGGGTTGGGTTGCTGCGTGGATGACAACGCACC CGAAAGCAAGTAGTTCCTTTTTTTTTTTCGCCCAGGTTAGATGGGGATGA ACAAATGAGAATCACAAAATACATTCTTGCATGCGTGAGAATGACGTTTT TACCCATATAATTTTTTTGTTTTCGTCAGCTCAAGTGCACCAAGTGCGGA CACTGCAGCGACACGTTCGACCCCTTCATGGACCTGTCCATGGACCTCTC GAGGGGGGTGCGATCGATAGACGTTGCTTTGAGGCGCTTCGTCGCGACA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14180:1..3349-

>mRNA_E-fasciculatus_F_contig14180.3054.1 ID=mRNA_E-fasciculatus_F_contig14180.3054.1|Name=mRNA_E-fasciculatus_F_contig14180.3054.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1284bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14180:1..3349- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGGAGCTCTACCTCGACTCTCGAATCAAGGCATGTCTACGGTGGAAGCA
GGTCCACAGGATGGGACCGGGGCTCCGCAATCTCGGCAACACCTGCTTCC
TGAACGCCACGCTGCAGTGCCTGAGCTACCTTCCCCCGCTGGCCCAGCAC
CTCCTCAAGGGGTTCTACGGTCAGAAGGAGCTCTACCTCGACTCTCGAAT
CAAGGCATGTCTACGGTGGAAGCAGGTCCACAGGATGGGACCGGGGCTCC
GCAATCTCGGCAACACCTGCTTCCTGAACGCCACGCTGCAGTGCCTGAGC
TACCTTCCCCCGCTGGCCCAGCACCTCCTCAAGGGGTTCTACGGTCAGGG
CCCCCAGGGGGTAGCTTCAAGGGGTCCCCGTCCATTGGGAGGCTTCCGGG
AGTTCACCAAGGTGGAGATACTGGCGGCGATGGAGCAGCACACGAAGCAG
GGCCCCCAGGGGGTAGCTTCAAGGGGTCCCCGTCCATTGGGAGGCTTCCG
GGAGTTCACCAAGGTGGAGATACTGGCGGCGATGGAGCAGCACACGAAGC
AGGTGCACCAGGGGCAGTTCACGGGGCTAGGGGCGATTAGCCCGAAGGTT
TTGGTTCAGAACCTCCGTATGATCGGGAAGCAGTTTCGACAGGGAAGACA
GGTGCACCAGGGGCAGTTCACGGGGCTAGGGGCGATTAGCCCGAAGGTTT
TGGTTCAGAACCTCCGTATGATCGGGAAGCAGTTTCGACAGGGAAGACAG
GAGGACGCCCACGAGTTCTTACGGCACCTCCTGGACAAGATGGTGGACTG
CTACCTCAAGCGCAAGGGGATCAAGTCGTCCGCGCCCAACAGGCTGGCGG
AGACGACGCCGATCAACCGCATCTTCGGGGGATACCTCCGCAGCCGGGAG
GACGCCCACGAGTTCTTACGGCACCTCCTGGACAAGATGGTGGACTGCTA
CCTCAAGCGCAAGGGGATCAAGTCGTCCGCGCCCAACAGGCTGGCGGAGA
CGACGCCGATCAACCGCATCTTCGGGGGATACCTCCGCAGCCGGCTCAAG
TGCACCAAGTGCGGACACTGCAGCGACACGTTCGACCCCTTCATGGACCT
GTCCATGGACCTCTCGAGGGGGGTGCGATCGATAGACGTTGCTTTGAGGC
GCTTCGTCGCGACACTCAAGTGCACCAAGTGCGGACACTGCAGCGACACG
TTCGACCCCTTCATGGACCTGTCCATGGACCTCTCGAGGGGGGTGCGATC
GATAGACGTTGCTTTGAGGCGCTTCGTCGCGACA
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