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Homology
BLAST of mRNA_E-fasciculatus_F_contig14160.3050.1 vs. uniprot
Match: D8LRY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY0_ECTSI) HSP 1 Score: 104 bits (260), Expect = 1.270e-20 Identity = 129/254 (50.79%), Postives = 131/254 (51.57%), Query Frame = 1
Query: 289 LKAMRAGTSVVSSSDAAAPAARVLHLGDDGAAGGGEGATPAAAQGLEPTRRSARIATRTARITDATPAGGGEENGSXXXXXXXXXXXXXXXXXXPKKARGESRGRGGGSGKAAVARGASVAHRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AKRSRGGQRTFGGGGRAAAPRSAGRITSGGRAGTATATAAARAAGTMESVGIAGGGSVRPGSWLEGNGDMGHMGGAGAGIGXXXXXXXPTPTAA 1047
L+A+RA SVVSSS AA PAA GAA RRS RIA R A TDATPAG GEENGS PKKARGESRGRGGGSGKA VA G S A R XXXXXXXXXXXXXXXXXXXXXX AKRSRGGQR FGGGGRAA GGSVRPGSWLEG GDMG MGGA GI PTP AA
Sbjct: 187 LRALRACQSVVSSSVAAQPAAA------QGAAPXXXXXXXXXXXXXXXMRRSTRIAARAACTTDATPAGVGEENGSGGSRKRGFPGGRAVSGPAPKKARGESRGRGGGSGKA-VALGISAAGRXXXXXXXXXXXXXXXXXXXXXXXSAETLAGVESSGREAKRSRGGQRAFGGGGRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSVRPGSWLEGYGDMGDMGGAAEGIHRTVGGGAPTPAAA 433
BLAST of mRNA_E-fasciculatus_F_contig14160.3050.1 vs. uniprot
Match: A0A6H5JEJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ6_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 4.380e-16 Identity = 143/292 (48.97%), Postives = 147/292 (50.34%), Query Frame = 1
Query: 286 ALKAMRAGTSVVSSSDAAAPAARVLHLGDDGAAGGGEGATPAAAQGLEPTRRSARIATRTARITDATPAGGGEENGSXXXXXXXXXXXXXXXXXXPKKARGESRGRGGGSGKAAVARGASVAHRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------AKRSRGGQRTFGGGGRAAA-------------------PRSAGRITSGGRAGTATATAAARAAGTMESVGIAGGGSVRPGSWLEGNGDMGHMGGAGAGIGXXXXXXXPTPTAA 1047
AL+ +RAG SVVSSS AA PAA TRRS RIA R AR ATPAG GEENGS PKKARGESRGRGGGSGKA V RG S A R XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AKRSRGGQR FGGGGRAA P G+ GGR TA T GSWLEG+GD G MGGAG GI PTPTAA
Sbjct: 495 ALRVLRAGQSVVSSSVAAQPAAAQXXXXXX------XXXXXXXXXXXXXTRRSTRIAARAARTIGATPAGVGEENGSGGSRKRGSPGGRAVSGPAPKKARGESRGRGGGSGKA-VTRGISAAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRSAETLAGGESSGREAKRSRGGQRAFGGGGRAAXXXXXXXXXXXXXXXAVSVEPVRKGQ-GGGGREDTARGTXXXXXXXXXXXXXXXXXXXXXXGSWLEGDGDTGDMGGAGVGIDRTVGGGAPTPTAA 778
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-08_002870.1 |
| Exons | 4 |
| Model size | 1283 |
| Cds size | 1257 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14160.3050.1 >prot_E-fasciculatus_F_contig14160.3050.1 ID=prot_E-fasciculatus_F_contig14160.3050.1|Name=mRNA_E-fasciculatus_F_contig14160.3050.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=419bp
MPPVDSEGAGSGSGGRGDPAEGDGVAEAAPGATMPPVDSEGAGSGSDGVG
DMEGSVVAALAGSPTTEAPRGGGGGGDSVPSAEDMVTALKAMRAGTSVVS
SSDAAAPAARVLHLGDDGAAGGGEGATPAAAQGLEPTRRSARIATRTARI
TDATPAGGGEENGSGGSKKRGSPGGRAASGPAPKKARGESRGRGGGSGKA
AVARGASVAHRRGGKAGKAVGRGAGAGSRGRKRSAETLAGGESSGPEAKR
SRGGQRTFGGGGRAAAPRSAGRITSGGRAGTATATAAARAAGTMESVGIA
GGGSVRPGSWLEGNGDMGHMGGAGAGIGGAAGGGAPTPTAAAADILNAIA
TDPTDPAAILDAFAPDPAADDDDSATASNAAIADLAAGPADTAAAALAAF
TYDTTDPAVILHAFAPAPA back to topmRNA from alignment at E-fasciculatus_F_contig14160:7..2446- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig14160.3050.1 ID=mRNA_E-fasciculatus_F_contig14160.3050.1|Name=mRNA_E-fasciculatus_F_contig14160.3050.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2440bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14160:7..2446- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCGCGGGCGCCCCAGGTGCGACCATGCCGCCGGTCGACTCGGAGGGGGC
GGGGTCAGGGTCGGGCGGTCGAGGAGACCCGGCTGAGGGCGACGGAGTCG
CTGAGGCGGCCCCAGGTGCGACCATGCCGCCGGTCGACTCGGAGGGGGCG
GGGTCAGGATCGGACGGTGTTGGAGACATGGAAGGTTCAGTGGTGGCAGC
GCTGGCGGGGTCGCCGACCACTGAAGCCCCCCGCGGTGGCGGCGGAGGCG
GCGACAGCGTGCCTTCGGCCGAGGACATGGTGACGGCCCTGAAGGCGATG
AGGGCAGGCACATCCGTGGTCTCGTCGTCGGTGGCGACCCAGCTCACCGC
CGCGCCGGCATCTCACCCGTCCGCTCAGGGAGCGACCCCGGCCGCGCAGG
GCCTGGGGACAACTTCCCCGCCGACGGAAGCTCTGCAGGAATCTGGGGGC
GGCGGCGGCGGCGGCAGCAGCGGCGGCGGTGACAGCGTCGCCCCGCCACA
GGATGCCGCGGCACCGGCTGCGCGCGTGCTCCACCTCGGGGACGACGGCG
CAGCAGGAGGAGGCGAGGGAGCCACCCCAGCCGCGGCGCAGGGCCTGGAG
CCGACGCGGCGAAGCGCTCGGATCGCAACGAGAACTGCGCGCATCACCGA
TGCTACGCCTGCGGGAGGAGGCGAGGAGAACGGTTCGGGGGGCAGCAAGA
AGAGGGGCTCCCCCGGAGGGAGGGCGGCCTCGGGCCCGGCGCCGAAGAAG
GCGCGCGGTGAGAGCCGCGGCCGCGGTGGAGGGTCCGGTAAGGCTGTGGG
CCGGGGAAGCAGCGCGGCGGGCCGCTGGGGAGGAAAGTCCAGCAAGGCTG
TGGCCCGGGGCGCGAGCGTGGCGCACCGCCGGGGAGGAAAGGCCGGCAAG
GCTGTGGGCCGGGGCGCCGGCGCGGGGTCCAGGGGGAGGAAGAGGTCGGC
GGAGACGCTGGCAGGCGGCGAGAGCTCGGGCCCGGAGGCGAAGAGGTCGC
GTGGCGGACAGAGGACGTTCGGTGGAGGAGGTAGGGCAGCGGCACCCCGG
TCGGCAGGAAGGATCACCTCGGGCGGCAGGGCAGGGACGGTGAGTGTCGT
GCCGGCGGCATAGATTTAGGCAGGGGGGGCGGGGAGGGCAGGTAAGCAAC
GCCACGAACGCGTGCAGAAATAGCATTGACGAGGAACCGTTAAGTGAAAC
GTCTTCTTCAGTTGCCTTTTGACTTCGAAGCACTTTCGCGGTGTCCTTTG
CGATGTTTCGGCTCACGAATCTCCTAGCACGAAACAAGGTTGAGCGATCC
TCCCCTCCCTCCTGTTTCATGTCGCTGCGCGGGTGACAAACTTGACCTTT
ATTGTTTTCTTTCGAATTGCGTTTATTACTCTTTTTCTAACGCCCGAGGG
AAGAGAGATACCAAACTGGCAGAGAGCACGTTTCCCGCAGACACCTTTCT
GCGGCCTTTCTATCATGCCTCTGCCTCTCTCCCAGTAAATACTGTCTCTT
CTGTTCCCTCCAAACAGCAACTGAGAGTGCTCTCTCCTGCGGTGGAGAGA
ACCAATCCGTACGGCACACAGTAAGTCCCCAATATGGCACCCTACCATCT
TCGCCTCACTTGCAACAACAAGTACTACAGGGAAACTGGAGTCAGTCCTC
TCCTTTCCCCCACCTTCAAAAGAAAAGGGGTGGGTAGGTGGGAAAAATAC
TCCACTTGTTGTTAGCTCCTGAGGCTGGCACACCACTAGAAGCCTTCTAT
GTGACCACCTCGCTAGTTGTCTCTGCGTCACACTCTCTCTCTCTCTCTGG
AACGCTAAGACTCTGTGGACACAAGACTTGAACAGAATGGTAACATGTGC
GACTCCTTCTCTCGTCCGAGGGGCCCCGTAGTACGCAGTACGTTCCGGGT
ACCCCAATATCAAAAGTATGTCAATTCGAACTGTTTCAGTAAACCTCGGT
TTGTTTTGTGTACGCCTTTGTCTACGCCTTAAACAAACCTGCCCTTGCGA
TGCCTCCCTTTCGTGATCCCTTTCAGGCCACAGCGACCGCCGCGGCGAGG
GCGGCGGGGACGATGGAGAGCGTGGGGATCGCAGGCGGAGGGTCAGTGAG
GCCGGGATCGTGGCTGGAGGGCAACGGCGACATGGGGCACATGGGAGGAG
CGGGGGCCGGAATCGGGGGCGCGGCAGGGGGAGGCGCCCCCACCCCCACC
GCCGCCGCCGCCGACATCCTGAACGCCATCGCCACCGACCCCACCGACCC
GGCGGCCATCCTGGACGCCTTCGCCCCCGACCCCGCCGCCGACGACGACG
ACAGCGCCACCGCCAGCAACGCTGCCATCGCTGACCTCGCCGCTGGTCCC
GCCGACACCGCCGCCGCCGCCCTCGCCGCTTTCACCTACGACACCACCGA
CCCGGCCGTCATCCTCCACGCCTTCGCCCCCGCCCCCGCC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig14160:7..2446- >mRNA_E-fasciculatus_F_contig14160.3050.1 ID=mRNA_E-fasciculatus_F_contig14160.3050.1|Name=mRNA_E-fasciculatus_F_contig14160.3050.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2514bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14160:7..2446- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGCCGGTCGACTCGGAGGGGGCGGGGTCAGGGTCGGGCGGTCGAGG
AGACCCGGCTGAGGGCGACGGAGTCGCTGAGGCGGCCCCAGGTGCGACCA
TGCCGCCGGTCGACTCGGAGGGGGCGGGGTCAGGATCGGACGGTGTTGGA
GACATGGAAGGTTCAGTGGTGGCAGCGCTGGCGGGGTCGCCGACCACTGA
AGCCCCCCGCGGTGGCGGCGGAGGCGGCGACAGCGTGCCTTCGGCCGAGG
ACATGGTGACGGCCCTGAAGGCGATGAGGGCAGGCACATCCGTGGTCTCG
TCGTCGATGCCGCCGGTCGACTCGGAGGGGGCGGGGTCAGGGTCGGGCGG
TCGAGGAGACCCGGCTGAGGGCGACGGAGTCGCTGAGGCGGCCCCAGGTG
CGACCATGCCGCCGGTCGACTCGGAGGGGGCGGGGTCAGGATCGGACGGT
GTTGGAGACATGGAAGGTTCAGTGGTGGCAGCGCTGGCGGGGTCGCCGAC
CACTGAAGCCCCCCGCGGTGGCGGCGGAGGCGGCGACAGCGTGCCTTCGG
CCGAGGACATGGTGACGGCCCTGAAGGCGATGAGGGCAGGCACATCCGTG
GTCTCGTCGTCGGATGCCGCGGCACCGGCTGCGCGCGTGCTCCACCTCGG
GGACGACGGCGCAGCAGGAGGAGGCGAGGGAGCCACCCCAGCCGCGGCGC
AGGGCCTGGAGCCGACGCGGCGAAGCGCTCGGATCGCAACGAGAACTGCG
CGCATCACCGATGCTACGCCTGCGGGAGGAGGCGAGGAGAACGGTTCGGG
GGGCAGCAAGAAGAGGGGCTCCCCCGGAGGGAGGGCGGCCTCGGGCCCGG
CGCCGAAGAAGGCGCGCGGTGAGAGCCGCGGCCGCGGTGGAGGGTCCGGT
AAGGCTGATGCCGCGGCACCGGCTGCGCGCGTGCTCCACCTCGGGGACGA
CGGCGCAGCAGGAGGAGGCGAGGGAGCCACCCCAGCCGCGGCGCAGGGCC
TGGAGCCGACGCGGCGAAGCGCTCGGATCGCAACGAGAACTGCGCGCATC
ACCGATGCTACGCCTGCGGGAGGAGGCGAGGAGAACGGTTCGGGGGGCAG
CAAGAAGAGGGGCTCCCCCGGAGGGAGGGCGGCCTCGGGCCCGGCGCCGA
AGAAGGCGCGCGGTGAGAGCCGCGGCCGCGGTGGAGGGTCCGGTAAGGCT
GCTGTGGCCCGGGGCGCGAGCGTGGCGCACCGCCGGGGAGGAAAGGCCGG
CAAGGCTGTGGGCCGGGGCGCCGGCGCGGGGTCCAGGGGGAGGAAGAGGT
CGGCGGAGACGCTGGCAGGCGGCGAGAGCTCGGGCCCGGAGGCGAAGAGG
TCGCGTGGCGGACAGAGGACGTTCGGTGGAGGAGGTAGGGCAGCGGCACC
CCGGTCGGCAGGAAGGATCACCTCGGGCGGCAGGGCAGGGACGGCTGTGG
CCCGGGGCGCGAGCGTGGCGCACCGCCGGGGAGGAAAGGCCGGCAAGGCT
GTGGGCCGGGGCGCCGGCGCGGGGTCCAGGGGGAGGAAGAGGTCGGCGGA
GACGCTGGCAGGCGGCGAGAGCTCGGGCCCGGAGGCGAAGAGGTCGCGTG
GCGGACAGAGGACGTTCGGTGGAGGAGGTAGGGCAGCGGCACCCCGGTCG
GCAGGAAGGATCACCTCGGGCGGCAGGGCAGGGACGGCCACAGCGACCGC
CGCGGCGAGGGCGGCGGGGACGATGGAGAGCGTGGGGATCGCAGGCGGAG
GGTCAGTGAGGCCGGGATCGTGGCTGGAGGGCAACGGCGACATGGGGCAC
ATGGGAGGAGCGGGGGCCGGAATCGGGGGCGCGGCAGGGGGAGGCGCCCC
CACCCCCACCGCCGCCGCCGCCGACATCCTGAACGCCATCGCCACCGACC
CCACCGACCCGGCGGCCATCCTGGACGCCTTCGCCCCCGACCCCGCCGCC
GACGACGACGACAGCGCCACCGCCAGCAACGCTGCCATCGCTGACCTCGC
CGCTGGTCCCGCCGACACCGCCGCCGCCGCCCTCGCCGCTTTCACCTACG
ACACCACCGACCCGGCCGTCATCCTCCACGCCTTCGCCCCCGCCCCCGCC
GCCACAGCGACCGCCGCGGCGAGGGCGGCGGGGACGATGGAGAGCGTGGG
GATCGCAGGCGGAGGGTCAGTGAGGCCGGGATCGTGGCTGGAGGGCAACG
GCGACATGGGGCACATGGGAGGAGCGGGGGCCGGAATCGGGGGCGCGGCA
GGGGGAGGCGCCCCCACCCCCACCGCCGCCGCCGCCGACATCCTGAACGC
CATCGCCACCGACCCCACCGACCCGGCGGCCATCCTGGACGCCTTCGCCC
CCGACCCCGCCGCCGACGACGACGACAGCGCCACCGCCAGCAACGCTGCC
ATCGCTGACCTCGCCGCTGGTCCCGCCGACACCGCCGCCGCCGCCCTCGC
CGCTTTCACCTACGACACCACCGACCCGGCCGTCATCCTCCACGCCTTCG
CCCCCGCCCCCGCC back to top
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