mRNA_E-fasciculatus_F_contig1416.3049.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1416.3049.1
Unique NamemRNA_E-fasciculatus_F_contig1416.3049.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1416.3049.1 vs. uniprot
Match: A0A6H5L5H5_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H5_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 1.930e-75
Identity = 195/270 (72.22%), Postives = 207/270 (76.67%), Query Frame = 1 
Query:    1 ANPGSSDXXXXXXXXXFH--ERRTTALASYLRKESVRLEGGSGARIPSEGPDTSRIRRSRDRPEGVGEEDDGGDDTEEKRAGTDAPRRLRYRQSGDXXXXXXXXXXXXXXXXXXXXXXXSGVPSDSGEEESLTMPGLSGVLVTQLTWGAGSGAWDEALKDXXXXXXXXXXXXXXXXXXXXXXXSTAKEADRTGLLGTTSVVLPGNVDVHGDDDLVTLATPPADDDCDSSDDEGRGSLERGAVQTSDRVGEGEEAEGCRGNGSRRRSTFTE 804
            ANP SSD XXXXXXXX    ERRTTALASYLR+ESVR+EGG+GAR P  GPDTSRIRR+ DRPE VG+E D  + T EKRAG DAPRRLRYRQSGDXXXXXX                   VPSDSGEE+SLTMPGL GV+VTQLTWGAGSGAWD ALKDXXXXXXXXXXXXXXXXXXXXXXX TA E DR    GTTSV LPGN DVHGDDDL T ATP  D+D  SSD E RG  ERG VQT D+ GE EEAEG RG+G+ RRSTFTE
Sbjct:  191 ANPCSSDGXXXXXXXXXXXXERRTTALASYLREESVRVEGGTGARTPIAGPDTSRIRRASDRPEEVGKEGDDDNGTNEKRAGDDAPRRLRYRQSGDXXXXXXQGE----------------VPSDSGEEDSLTMPGLGGVIVTQLTWGAGSGAWDAALKDXXXXXXXXXXXXXXXXXXXXXXXXTAIETDR----GTTSVALPGNADVHGDDDLGTPATPLVDEDWGSSDAERRGGSERGTVQTLDQSGE-EEAEGHRGDGNTRRSTFTE 439
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1416.3049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5H5_9PHAE1.930e-7572.22Cyclic nucleotide-binding domain-containing protei... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1416contigE-fasciculatus_F_contig1416:16433..18072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIon transport domain
Ec32 orthologEc-10_000150.1
Exons2
Model size916
Cds size915
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927908.4016678-CDS-E-fasciculatus_F_contig1416:16433..165441622927908.4016678-CDS-E-fasciculatus_F_contig1416:16433..16544Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1416 16434..16544 -
1695995747.0916553-CDS-E-fasciculatus_F_contig1416:16433..165441695995747.0916553-CDS-E-fasciculatus_F_contig1416:16433..16544Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1416 16434..16544 -
1622927908.4123006-CDS-E-fasciculatus_F_contig1416:17268..180721622927908.4123006-CDS-E-fasciculatus_F_contig1416:17268..18072Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1416 17269..18072 -
1695995747.107644-CDS-E-fasciculatus_F_contig1416:17268..180721695995747.107644-CDS-E-fasciculatus_F_contig1416:17268..18072Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1416 17269..18072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1416.3049.1prot_E-fasciculatus_F_contig1416.3049.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1416 16434..18072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1416.3049.1

>prot_E-fasciculatus_F_contig1416.3049.1 ID=prot_E-fasciculatus_F_contig1416.3049.1|Name=mRNA_E-fasciculatus_F_contig1416.3049.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=305bp
ANPGSSDDGGGSSGGMFHERRTTALASYLRKESVRLEGGSGARIPSEGPD
TSRIRRSRDRPEGVGEEDDGGDDTEEKRAGTDAPRRLRYRQSGDGGGGGG
RGEVSPTPQQEEEEQEQSGVPSDSGEEESLTMPGLSGVLVTQLTWGAGSG
AWDEALKDAAADAAAEGTGAAAATAAAVGAASTAKEADRTGLLGTTSVVL
PGNVDVHGDDDLVTLATPPADDDCDSSDDEGRGSLERGAVQTSDRVGEGE
EAEGCRGNGSRRRSTFTERLAPLRRAPSLEPEQDARHIPPATAPSIDRDK
PQEHA
back to top

mRNA from alignment at E-fasciculatus_F_contig1416:16433..18072-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1416.3049.1 ID=mRNA_E-fasciculatus_F_contig1416.3049.1|Name=mRNA_E-fasciculatus_F_contig1416.3049.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1640bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1416:16433..18072- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAACCCTGGCTCAAGCGACGACGGCGGAGGTAGCAGCGGTGGCATGTT
TCATGAGCGCCGAACGACCGCTCTCGCCTCCTACCTCCGCAAAGAAAGCG
TTCGGCTTGAGGGAGGGTCAGGTGCGAGAATACCAAGCGAAGGCCCGGAC
ACGAGCCGAATACGACGGTCGAGAGATAGACCAGAGGGGGTGGGGGAAGA
AGACGACGGCGGTGACGATACGGAAGAGAAGAGGGCCGGAACCGACGCGC
CGCGGAGATTGAGATACCGTCAGAGCGGCGACGGTGGCGGTGGCGGTGGT
CGAGGAGAGGTTTCCCCTACGCCGCAGCAGGAGGAGGAGGAGCAGGAGCA
GAGTGGAGTGCCCTCGGATAGCGGGGAGGAGGAGTCCCTGACGATGCCGG
GGTTGAGCGGCGTTCTTGTGACGCAGCTCACGTGGGGGGCCGGCAGCGGT
GCTTGGGACGAGGCACTGAAGGATGCGGCGGCAGACGCGGCGGCGGAAGG
GACTGGCGCGGCAGCAGCAACAGCAGCAGCAGTAGGTGCGGCATCAACAG
CGAAAGAGGCAGACAGAACAGGCCTCCTTGGCACCACGTCTGTCGTCCTG
CCCGGAAACGTAGACGTACACGGCGATGACGACCTCGTAACGCTAGCCAC
GCCGCCAGCAGACGACGACTGCGACTCATCGGATGATGAGGGGAGAGGGA
GCTTGGAGCGGGGTGCGGTGCAGACGTCAGACCGGGTAGGAGAAGGGGAG
GAGGCAGAGGGATGCCGTGGGAACGGTAGCAGGCGAAGGTCTACCTTTAC
GGAGGTACGTACGTGTGGCCGTGGCACCTCATTGGACTCATCGACGACCA
ACGCACGGACCAGGATAGATGTAGACCTGAAGCCTTGTTGGTTGGACACT
ACCTCGTAATACTTACTAGAAGCAAGCTGTTCAGTAGTAAAGGTTTGTGA
AGGTTTTCCGCATAACCCGTTGGCACGCTCGCACCATGGTTGAAGTCGTA
GGAGGGCTGCTGTGAGTAGCACCAGCCAGCTGCCACATGCAAGAAAGAAA
ACCTTTCGACGTGCTATTTACGTGAAAAAGTAAAAAGTGTCGTTTTGAGG
GTCTATGTTTCCCGCATAGAGAGTTTGAGTAACACAAAAATCGATCCACG
GATTTTCCGGAACGGGCACTATTTGGCCAATACTATCACGTCCTGGGAGC
TGGTACACACGTCTCCACACCAACACTGTCCGTTGCATGTTTTTCTCCCT
CCACAAAACCCTGAACACGCTTTGTTTCGCGTCATGAAGCCTGTGGTGTA
GACCTCTGAAATGTTAGCCTTTGCTCGGATTCGACACCAACCATCTGTAG
GTCCGTGGTGTGAACATTAACTGATCACTTTTCAGCTAGCATTTGCTTCC
CTCAATCGTAACAGCAACCCGTCACCCGTATTTGACGAAGCTCCTATGTT
TTTTTTTTTTTCTCTACCGTTGAATCCGAATTCGGGGATTTCTCTGCCGT
TCTCTCCGTTTCGGTTCTGGCCCAGCAGCGGTTAGCACCACTACGGCGAG
CCCCAAGTCTTGAGCCCGAACAAGACGCGCGTCATATTCCACCAGCCACC
GCTCCATCAATAGATAGAGATAAACCGCAAGAACATGCGG
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1416:16433..18072-

>mRNA_E-fasciculatus_F_contig1416.3049.1 ID=mRNA_E-fasciculatus_F_contig1416.3049.1|Name=mRNA_E-fasciculatus_F_contig1416.3049.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1830bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1416:16433..18072- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGAACCCTGGCTCAAGCGACGACGGCGGAGGTAGCAGCGGTGGCATGTT
TCATGAGCGCCGAACGACCGCTCTCGCCTCCTACCTCCGCAAAGAAAGCG
TTCGGCTTGAGGGAGGGTCAGGTGCGAGAATACCAAGCGAAGGCCCGGAC
ACGAGCCGAATACGACGGTCGAGAGATAGACCAGAGGGGGTGGGGGAAGA
AGACGACGGCGGTGACGATACGGAAGAGAAGAGGGCCGGAACCGACGCGC
CGCGGAGATTGAGATACCGTCAGAGCGGCGACGGTGGCGGTGGCGGTGGT
CGAGGAGAGGTTTCCCCTACGCCGCAGCAGGAGGAGGAGGAGCAGGAGCA
GAGTGGAGTGCCCTCGGATAGCGGGGAGGAGGAGTCCCTGACGATGCCGG
GGTTGAGCGGCGTTCTTGTGACGCAGCTCACGTGGGGGGCCGGCAGCGGT
GCTTGGGACGAGGCACTGAAGGATGCGGCGGCAGACGCGGCGGCGGAAGG
GACTGGCGCGGCAGCAGCAACAGCAGCAGCAGTAGGTGCGGCATCAACAG
CGAAAGAGGCAGACAGAACAGGCCTCCTTGGCACCACGTCTGTCGTCCTG
CCCGGAAACGTAGACGTACACGGCGATGACGACCTCGTAACGCTAGCCAC
GCCGCCAGCAGACGACGACTGCGACTCATCGGATGATGAGGGGAGAGGGA
GCTTGGAGCGGGGTGCGGTGCAGACGTCAGACCGGGTAGGAGAAGGGGAG
GAGGCAGAGGGATGCCGTGGGAACGGTAGCAGGCGAAGGTCTACCTTTAC
GGAGGCGAACCCTGGCTCAAGCGACGACGGCGGAGGTAGCAGCGGTGGCA
TGTTTCATGAGCGCCGAACGACCGCTCTCGCCTCCTACCTCCGCAAAGAA
AGCGTTCGGCTTGAGGGAGGGTCAGGTGCGAGAATACCAAGCGAAGGCCC
GGACACGAGCCGAATACGACGGTCGAGAGATAGACCAGAGGGGGTGGGGG
AAGAAGACGACGGCGGTGACGATACGGAAGAGAAGAGGGCCGGAACCGAC
GCGCCGCGGAGATTGAGATACCGTCAGAGCGGCGACGGTGGCGGTGGCGG
TGGTCGAGGAGAGGTTTCCCCTACGCCGCAGCAGGAGGAGGAGGAGCAGG
AGCAGAGTGGAGTGCCCTCGGATAGCGGGGAGGAGGAGTCCCTGACGATG
CCGGGGTTGAGCGGCGTTCTTGTGACGCAGCTCACGTGGGGGGCCGGCAG
CGGTGCTTGGGACGAGGCACTGAAGGATGCGGCGGCAGACGCGGCGGCGG
AAGGGACTGGCGCGGCAGCAGCAACAGCAGCAGCAGTAGGTGCGGCATCA
ACAGCGAAAGAGGCAGACAGAACAGGCCTCCTTGGCACCACGTCTGTCGT
CCTGCCCGGAAACGTAGACGTACACGGCGATGACGACCTCGTAACGCTAG
CCACGCCGCCAGCAGACGACGACTGCGACTCATCGGATGATGAGGGGAGA
GGGAGCTTGGAGCGGGGTGCGGTGCAGACGTCAGACCGGGTAGGAGAAGG
GGAGGAGGCAGAGGGATGCCGTGGGAACGGTAGCAGGCGAAGGTCTACCT
TTACGGAGCGGTTAGCACCACTACGGCGAGCCCCAAGTCTTGAGCCCGAA
CAAGACGCGCGTCATATTCCACCAGCCACCGCTCCATCAATAGATAGAGA
TAAACCGCAAGAACATGCGCGGTTAGCACCACTACGGCGAGCCCCAAGTC
TTGAGCCCGAACAAGACGCGCGTCATATTCCACCAGCCACCGCTCCATCA
ATAGATAGAGATAAACCGCAAGAACATGCG
back to top