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Homology
BLAST of mRNA_E-fasciculatus_F_contig14152.3045.1 vs. uniprot
Match: D8LTD6_ECTSI (Protein kinase domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTD6_ECTSI) HSP 1 Score: 513 bits (1321), Expect = 1.620e-158 Identity = 313/385 (81.30%), Postives = 327/385 (84.94%), Query Frame = 1
Query: 1 GFSVKEENDSELDDAVIDATGEDSXXXXXXXXXXXXXXTDVTPRPTPPCPATTTAGTAPAVPPSMSSVLKRAASGPAGSKAHASAPALAMTTSPALVGLSRRPSREAQGVDTHGEKRAPALAQASSVEHLARGGWGDDSPPARLSRSLSLSQTSAPSAWNGAAAAGCA-----KVTRSSHRRRSRANSTSSPLPVLEMSASMPTGGI---DATAVAREDFTARSFGSVTSLRHRRRGSLGGGLXXXXXXXGGIKHARRMSSCEVSSGSSAPLSRSHRMPNFNHGNGLRNAGRPVSLPRGIMERGNRAGGGEVPGEALSIGGEAGFGWVLRSPGAPLDDRRRSKSFAGGARPSATHSRSDSNPVRSSSGGAAERPPGLAGAASGDI 1131
GFSV+EENDSELDDAVIDATG+DS XXXXXXXXXXX TDV PRP PPCP TTTAG+APAV S S+LKRAA P KAH SPALVGLSRRP REAQ V THGEKRAPALAQASSVE LARGGWGDDSPPARLSRSLSLSQTSAPSAW+GAA KVTRSSHRRRSRANSTSSPLPVLEMSASMPTGGI DATAVAREDFTARSFGSV SLRHRRRGSLGGG XXX GIKHARR SSCEVSSGS+APLSRSHRMP+FNHGN LRN GRPVSLP+GIMERG+R GG E+PGEALSIGG+AGFGWVLRSPGAP DDRRRSKSFAGGARPSATH+RSDSNPVRSS GGAA+ PPGLAGAAS D+
Sbjct: 369 GFSVEEENDSELDDAVIDATGDDSDXXXXXXXXXXXSSTDVIPRPKPPCPTTTTAGSAPAVASSTXSILKRAAPDPTDLKAHXXXXXXXXXXSPALVGLSRRPRREAQRV-THGEKRAPALAQASSVEDLARGGWGDDSPPARLSRSLSLSQTSAPSAWHGAAXXXXXXXXXXKVTRSSHRRRSRANSTSSPLPVLEMSASMPTGGIGLSDATAVAREDFTARSFGSVASLRHRRRGSLGGGSXXXGD---GIKHARRKSSCEVSSGSNAPLSRSHRMPSFNHGNSLRNPGRPVSLPQGIMERGSRRGGEEIPGEALSIGGDAGFGWVLRSPGAPPDDRRRSKSFAGGARPSATHARSDSNPVRSSGGGAAQYPPGLAGAASVDM 749
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 451.4 |
| Seed ortholog evalue | 4.8e-124 |
| Seed eggNOG ortholog | 2880.D8LTD6 |
| EggNOG OGs | 28UP7@1,2R1E5@2759 |
| Ec32 ortholog description | Protein kinase-like domain |
| Ec32 ortholog | Ec-02_005950.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1915 |
| Cds size | 1347 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14152.3045.1 >prot_E-fasciculatus_F_contig14152.3045.1 ID=prot_E-fasciculatus_F_contig14152.3045.1|Name=mRNA_E-fasciculatus_F_contig14152.3045.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=449bp
MSSVLKRAASGPAGSKAHASAPALAMTTSPALVGLSRRPSREAQGVDTHG
EKRAPALAQASSVEHLARGGWGDDSPPARLSRSLSLSQTSAPSAWNGAAA
AGCAKVTRSSHRRRSRANSTSSPLPVLEMSASMPTGGIDATAVAREDFTA
RSFGSVTSLRHRRRGSLGGGLGGLGGTGGGIKHARRMSSCEVSSGSSAPL
SRSHRMPNFNHGNGLRNAGRPVSLPRGIMERGNRAGGGEVPGEALSIGGE
AGFGWVLRSPGAPLDDRRRSKSFAGGARPSATHSRSDSNPVRSSSGGAAE
RPPGLAGAASGDIPRDVRRWRQGRGDGSRADAAGIPVGHRRHRGYAPGAR
AELRGKAYGPAGDQVAGRRDARRAGPARDHGRPYRRQPRSWPWPFHFRGD
HVSRSERRHAEPTADQFAACPLHPGGQLERRDKRAVEVEVERCRWVPD* back to topmRNA from alignment at E-fasciculatus_F_contig14152:378..3036- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig14152.3045.1 ID=mRNA_E-fasciculatus_F_contig14152.3045.1|Name=mRNA_E-fasciculatus_F_contig14152.3045.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2659bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14152:378..3036- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTTTCAGCGTTAAAGAAGAAAACGACAGCGAGCTCGACGACGCCGTGAT
CGACGCGACAGGAGAAGACAGCGATGACCTAGACGATGTCGTTATCGACC
TAACTTCATCGTCTACCGACGTGACCCCAAGGCCCACACCGCCGTGCCCG
GCCACGACAACGGCGGGGACCGCACCTGCGGTACCCCCATCCATGTCCAG
CGTCCTCAAGCGCGCCGCCTCAGGCCCCGCAGGCTCGAAGGCCCACGCGT
CTGCGCCAGCGCTAGCGATGACCACCAGCCCGGCGTTGGTCGGGCTCAGC
AGACGGCCGAGCCGCGAGGCTCAGGGGGTCGACACCCATGGGGAGAAGAG
GGCGCCGGCTCTGGCGCAAGCGTCATCGGTGGAACATCTCGCCCGTGGGG
GGTGGGGGGACGATAGCCCTCCCGCCAGGCTATCCCGGTCTTTATCCTTG
TCGCAGACCTCGGCGCCCTCCGCTTGGAACGGGGCCGCCGCCGCCGGCTG
CGCCAAGGTCACCCGGTCCTCCCACCGCCGCAGGTCGAGAGCCAACTCGA
CGTCGTCGCCCTTGCCGGTGTTGGAGATGTCCGCGTCCATGCCGACTGGA
GGCATCGATGCCACAGCGGTCGCGAGGGAAGACTTTACCGCTCGCAGTTT
CGGGTCGGTTACCTCTCTTAGGCACAGGAGGAGAGGGAGCCTTGGTGGCG
GCCTTGGCGGCCTTGGCGGTACCGGCGGCGGCATCAAACACGCGCGGAGG
ATGAGCTCCTGCGAGGTCTCTAGCGGAAGCAGCGCACCGTTGTCCCGCTC
CCACCGCATGCCCAATTTCAACCACGGGAACGGCCTACGGAACGCGGGCC
GGCCGGTCTCTCTTCCGCGGGGGATCATGGAGAGGGGAAACCGCGCCGGC
GGGGGAGAGGTTCCGGGAGAGGCGTTGTCAATCGGCGGCGAAGCCGGGTT
CGGTTGGGTGTTGCGCTCCCCCGGCGCTCCCCTTGACGACCGCCGCCGGT
CGAAGTCGTTCGCGGGCGGCGCCAGGCCGAGCGCGACGCACTCGAGGTCC
GACTCGAACCCCGTCCGTTCTTCTAGCGGTGGGGCGGCAGAGCGCCCCCC
TGGTCTCGCCGGCGCCGCTTCCGGCGACATGTACGGCCTGTCGGGAGAAT
GGGCAAGACGAGCCTCGGGTGAGCAAGACCCCGGGATGTTCGTCGCTGGC
GACAAGGACGAGGAGATGGCTCCCGCGCAGACGCCGCAGGCATCCCCGTC
GGACACCGGCGACACCGCGGCTATGCGCCGGGCGCACGGGCTGAGCTCCG
TGGCAAGGCGTATGGACCGGCTGGAGATCAGGTCGCCGGACGTCGAGACG
CACGCCGCGCAGGTACTACACTATTGCTGTACCGAACAAGTAGTCTTGCA
GCGGTGTTCTCCCTTGTTGTTGTCGGAAGCGTTTTGGGGTGGCCTTGCGA
GGGAGGACCACGGGTTCTTTGACCCCCCAAGGCTGACTCACAGACGGATG
GTAAATAGTGTACTGCTGGGGGCGTGTTGTTCGGGCAAGCGGTGTGCGCA
CCCGCTGGCCGCTGAAGGCACACCCACGCACACAGCGGCGCTGCCTGCCA
CCGCCTGCGTGTATCATGCATTGCTTAGTCACGTTACCGTTGCCTTTCCT
CACCGACCGCCCTGTGATGATGATTTTCGCGATCCTCCTTTGGGGTGTAG
GCCCAGCTCGAGATCATGGCAGACCCTACCGGCGACAACCCCGGTCATGG
CCATGGCCGTTCCATTTCCGAGGCGACCACGTCTCTCGGAGCGAGCGACG
GCACGCCGAGCCGACCGCGGATCAGTTCGCTGCCTGCCCACTACACCCCG
GTGGGCAACTCGAACGCCGCGACAAACGAGCGGTCGAGGTCGAGGTTGAG
CGGTGCCGGTGGGTCCCCGACTGAGTGCTTCCGCGACTACCTGAGCGGCC
TTCACGGGAAGGAAGAGGAGGACGATGAGGAGGTGAGGCTGCGGCACGAG
CATTGGTGAAACAGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCGGTGACGGACGGGAATCTCTGTGATGACTGGCCCACTCGTCGCATC
TCTTTTGGACATGTACCCTTTTCGCCTTCTCCAATCGCATCTCGGGATGA
TACGTCCGGGCAGCTGCTGTATTGTTGGCTCTCTCTGTTTCAGGCATCGT
GCCTGTCCTTTGCTCTGCCATTTCCTTTTCGAACGCCGCCGCTGCTTGTC
GATACTTCCACTAACTGATACAACTACCCCCACGTACCACGCGTTGCTCT
CCCCCCCAATGCATGACACACCAACACACACACAACCGCAGCTCCTCGGG
GAGGCTAAGCACGAAGGAAAAGCGCCGGAGACCCCGTCTGCCGTCGACAC
GCCCTCGGCGCCCGCGTCCCACAGTCCCCCTGGAGTCACCTGCACCCGCT
CCACCGCGCTGGGCCTGCCTAGCCCCATCCTCGCCGGTCTATTCGGAGAC
GCCGACAACAGCCACGCCCTCCAAACCGACGCCAGCTTCACACCGCGGGC
AGGCTCGGCGGCTTCTGGTGGCAGTGGTGCCGCAGTCGACGGTGCCCTCG
GCGGGAGCGGCGGCGCCAGTGGCGGCGATGACGCGGTTGGTGGTGAAGGG
AGGAGTGGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig14152:378..3036- >mRNA_E-fasciculatus_F_contig14152.3045.1 ID=mRNA_E-fasciculatus_F_contig14152.3045.1|Name=mRNA_E-fasciculatus_F_contig14152.3045.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2694bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14152:378..3036- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTCCAGCGTCCTCAAGCGCGCCGCCTCAGGCCCCGCAGGCTCGAAGGC
CCACGCGTCTGCGCCAGCGCTAGCGATGACCACCAGCCCGGCGTTGGTCG
GGCTCAGCAGACGGCCGAGCCGCGAGGCTCAGGGGGTCGACACCCATGGG
GAGAAGAGGGCGCCGGCTCTGGCGCAAGCGTCATCGGTGGAACATCTCGC
CCGTGGGGGGTGGGGGGACGATAGCCCTCCCGCCAGGCTATCCCGGTCTT
TATCCTTGTCGCAGACCTCGGCGCCCTCCGCTTGGAACGGGGCCGCCGCC
GCCGGCTGCGCCAAGGTCACCCGGTCCTCCCACCGCCGCAGGTCGAGAGC
CAACTCGACGTCGTCGCCCTTGCCGGTGTTGGAGATGTCCGCGTCCATGC
CGACTGGAGGCATCGATGCCACAGCGGTCGCGAGGGAAGACTTTACCGCT
CGCAGTTTCGGGTCGGTTACCTCTCTTAGGCACAGGAGGAGAGGGAGCCT
TGGTGGCGGCCTTGGCGGCCTTGGCGGTACCGGCGGCGGCATCAAACACG
CGCGGAGGATGAGCTCCTGCGAGGTCTCTAGCGGAAGCAGCGCACCGTTG
TCCCGCTCCCACCGCATGCCCAATTTCAACCACGGGAACGGCCTACGGAA
CGCGGGCCGGCCGGTCTCTCTTCCGCGGGGGATCATGGAGAGGGGAAACC
GCGCCGGCGGGGGAGAGGTTCCGGGAGAGGCGTTGTCAATCGGCGGCGAA
GCCGGGTTCGGTTGGGTGTTGCGCTCCCCCGGCGCTCCCCTTGACGACCG
CCGCCGGTCGAAGTCGTTCGCGGGCGGCGCCAGGCCGAGCGCGACGCACT
CGAGGTCCGACTCGAACCCCGTCCGTTCTTCTAGCGGTGGGGCGGCAGAG
CGCCCCCCTGGTCTCGCCGGCGCCGCTTCCGGCGACATATGTCCAGCGTC
CTCAAGCGCGCCGCCTCAGGCCCCGCAGGCTCGAAGGCCCACGCGTCTGC
GCCAGCGCTAGCGATGACCACCAGCCCGGCGTTGGTCGGGCTCAGCAGAC
GGCCGAGCCGCGAGGCTCAGGGGGTCGACACCCATGGGGAGAAGAGGGCG
CCGGCTCTGGCGCAAGCGTCATCGGTGGAACATCTCGCCCGTGGGGGGTG
GGGGGACGATAGCCCTCCCGCCAGGCTATCCCGGTCTTTATCCTTGTCGC
AGACCTCGGCGCCCTCCGCTTGGAACGGGGCCGCCGCCGCCGGCTGCGCC
AAGGTCACCCGGTCCTCCCACCGCCGCAGGTCGAGAGCCAACTCGACGTC
GTCGCCCTTGCCGGTGTTGGAGATGTCCGCGTCCATGCCGACTGGAGGCA
TCGATGCCACAGCGGTCGCGAGGGAAGACTTTACCGCTCGCAGTTTCGGG
TCGGTTACCTCTCTTAGGCACAGGAGGAGAGGGAGCCTTGGTGGCGGCCT
TGGCGGCCTTGGCGGTACCGGCGGCGGCATCAAACACGCGCGGAGGATGA
GCTCCTGCGAGGTCTCTAGCGGAAGCAGCGCACCGTTGTCCCGCTCCCAC
CGCATGCCCAATTTCAACCACGGGAACGGCCTACGGAACGCGGGCCGGCC
GGTCTCTCTTCCGCGGGGGATCATGGAGAGGGGAAACCGCGCCGGCGGGG
GAGAGGTTCCGGGAGAGGCGTTGTCAATCGGCGGCGAAGCCGGGTTCGGT
TGGGTGTTGCGCTCCCCCGGCGCTCCCCTTGACGACCGCCGCCGGTCGAA
GTCGTTCGCGGGCGGCGCCAGGCCGAGCGCGACGCACTCGAGGTCCGACT
CGAACCCCGTCCGTTCTTCTAGCGGTGGGGCGGCAGAGCGCCCCCCTGGT
CTCGCCGGCGCCGCTTCCGGCGACATACCCCGGGATGTTCGTCGCTGGCG
ACAAGGACGAGGAGATGGCTCCCGCGCAGACGCCGCAGGCATCCCCGTCG
GACACCGGCGACACCGCGGCTATGCGCCGGGCGCACGGGCTGAGCTCCGT
GGCAAGGCGTATGGACCGGCTGGAGATCAGGTCGCCGGACGTCGAGACGC
ACGCCGCGCAGACCCCGGGATGTTCGTCGCTGGCGACAAGGACGAGGAGA
TGGCTCCCGCGCAGACGCCGCAGGCATCCCCGTCGGACACCGGCGACACC
GCGGCTATGCGCCGGGCGCACGGGCTGAGCTCCGTGGCAAGGCGTATGGA
CCGGCTGGAGATCAGGTCGCCGGACGTCGAGACGCACGCCGCGCAGGCCC
AGCTCGAGATCATGGCAGACCCTACCGGCGACAACCCCGGTCATGGCCAT
GGCCGTTCCATTTCCGAGGCGACCACGTCTCTCGGAGCGAGCGACGGCAC
GCCGAGCCGACCGCGGATCAGTTCGCTGCCTGCCCACTACACCCCGGTGG
GCAACTCGAACGCCGCGACAAACGAGCGGTCGAGGTCGAGGTTGAGCGGT
GCCGGTGGGTCCCCGACTGAGCCCAGCTCGAGATCATGGCAGACCCTACC
GGCGACAACCCCGGTCATGGCCATGGCCGTTCCATTTCCGAGGCGACCAC
GTCTCTCGGAGCGAGCGACGGCACGCCGAGCCGACCGCGGATCAGTTCGC
TGCCTGCCCACTACACCCCGGTGGGCAACTCGAACGCCGCGACAAACGAG
CGGTCGAGGTCGAGGTTGAGCGGTGCCGGTGGGTCCCCGACTGA back to top
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