mRNA_E-fasciculatus_F_contig14150.3044.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig14150.3044.1 vs. uniprot
Match: A0A6H5JTL7_9PHAE (Rhomboid-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL7_9PHAE) HSP 1 Score: 587 bits (1512), Expect = 4.110e-205 Identity = 281/295 (95.25%), Postives = 287/295 (97.29%), Query Frame = 1
Query: 1 DDRPRNENGTTGEYAVPTYRSLIFTPLMFLICLILLFWEFGLNGWTAESLAENPSYGPSVETLIEAGAKRTDLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVLFILTAVNIILGMMPFLDNFAHCGGMLMGLFMGLGLLVQKREDDRGDRLHKKCYQ--ISLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPGDNPWWACDECSTVGF 879
DDRPRNENGTTGEYAVP+YRSLIFTPLMFLICLILLFWEFGLNGW AE L ENPSYGPSVETLI+AGAKR DLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVLFILTAVNIILG+MP+LDNFAHCGGMLMGLFMGLGLLVQKREDDRG RL KKCYQ +SLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPGD+PWWACDECSTVGF
Sbjct: 394 DDRPRNENGTTGEYAVPSYRSLIFTPLMFLICLILLFWEFGLNGWVAEPLEENPSYGPSVETLIDAGAKRGDLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVLFILTAVNIILGLMPYLDNFAHCGGMLMGLFMGLGLLVQKREDDRGYRLDKKCYQARVSLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPGDSPWWACDECSTVGF 688
BLAST of mRNA_E-fasciculatus_F_contig14150.3044.1 vs. uniprot
Match: D8LIB7_ECTSI (Rhomboid-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB7_ECTSI) HSP 1 Score: 569 bits (1467), Expect = 8.490e-198 Identity = 274/281 (97.51%), Postives = 278/281 (98.93%), Query Frame = 1
Query: 1 DDRPRNENGTTGEYAVPTYRSLIFTPLMFLICLILLFWEFGLNGWTAESLAENPSYGPSVETLIEAGAKRTDLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVLFILTAVNIILGMMPFLDNFAHCGGMLMGLFMGLGLLVQKREDDRGDRLHKKCYQISLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPGDNP 843
DDRPRNENGTTGEYAVPTYRSLIFTPLMFLICLILLFWEFGLNGW AESL ENPSYGPSVETLIEAGAKRTDLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVA IYLV+GVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVLFILTAVNIILG+MPFLDNFAHCGGMLMGLFMGLGLLVQKREDDRGDRL+KKCYQISLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPGD+P
Sbjct: 396 DDRPRNENGTTGEYAVPTYRSLIFTPLMFLICLILLFWEFGLNGWEAESLEENPSYGPSVETLIEAGAKRTDLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVASIYLVSGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVLFILTAVNIILGLMPFLDNFAHCGGMLMGLFMGLGLLVQKREDDRGDRLNKKCYQISLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPGDSP 676
BLAST of mRNA_E-fasciculatus_F_contig14150.3044.1 vs. uniprot
Match: A0A835YQV6_9STRA (Rhomboid-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQV6_9STRA) HSP 1 Score: 281 bits (718), Expect = 7.660e-91 Identity = 140/261 (53.64%), Postives = 180/261 (68.97%), Query Frame = 1
Query: 103 LLFWEFGLNGWTAESLAENPSYGPSVETLIEAGAKRTDLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVLFILTAVNIILGMMPFLDNFAHCGGMLMGLFMGLGLLVQKREDDRGDRLHKKCYQISLQLVAAVAVPTLMILGLSLLYGRSDPA--EWCGWCENISCVEFPPGDNPWWACDECSTVGF 879
+L WEF +N W E L+ NPS G S ETL+E GAK DLIV NG+ +RL+S +FLHAG++HF+FNML +GA++ERVFG ++V I++V+GVF T VSAIF+P QVMVGASGAI G+ G +WADL QNWS+ Q VLF +TAVN++LG+MP+LDNFAH GG++MG F L LLV + E G + Q LQ + V L++ L +L+G + + EWC WC N+SCVEFP GD P W CDECS GF
Sbjct: 1 MLIWEFSVNDWKIEPLSVNPSIGVSAETLVECGAKVYDLIV-NGEAYRLLSAVFLHAGIIHFIFNMLALFSIGAVLERVFGGFKVLVIFIVSGVFSTAVSAIFLPYQVMVGASGAILGLLGGVWADLLQNWSLKQRPWVSIIVLFTITAVNLLLGLMPYLDNFAHMGGLVMGFFCSLPLLVMRAETAHGKLVAVSVRQRILQALGLVTSIALLVAALVVLFGSEEDSVNEWCSWCSNLSCVEFPKGD-PLWRCDECSQAGF 259
BLAST of mRNA_E-fasciculatus_F_contig14150.3044.1 vs. uniprot
Match: A0A2R5GUE1_9STRA (Rhomboid-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUE1_9STRA) HSP 1 Score: 270 bits (691), Expect = 1.130e-85 Identity = 135/276 (48.91%), Postives = 181/276 (65.58%), Query Frame = 1
Query: 52 TYRSLIFTPLMFLICLILLFWEFGLNGWTAESLAENPSYGPSVETLIEAGAKRTDLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDR-CRMFTVLFILTAVNIILGMMPFLDNFAHCGGMLMGLFMGLGLLVQKREDDRGDRLHKKCYQISLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPGDNPWWACDECSTVG 876
T R L+ L FL C ++L EF +N W ES + NP+ G SV TL+E GAKR DLI++ GDW+RLI+P+FLHAG++H+LFNM Q+G +E FG A I L+ G G + SAI P V VGASGAIF +FG+ W++L NWS+ + + C T L + TAVN++LG+MPFLDNFAH G + G+ +G G+LV R G+ +K YQ+ LQ ++ + P L+++ L +LY D EWC WC +SCV FPPGD+PWW CDECS G
Sbjct: 66 TGRPLVCMTL-FLCCSVMLVIEFAVNNWELESFSTNPTIGVSVSTLLELGAKRADLILE-GDWYRLIAPIFLHAGILHYLFNMFALWQIGFPLENQFGSLAAALIILLGGFQGVVWSAILSPVTVGVGASGAIFALFGSAWSELILNWSLYKGQHCISITQLVLATAVNLMLGLMPFLDNFAHIAGFVTGILVGFGVLVSNRFTRWGELKERKRYQVVLQSLSVLITPLLVVVSLLVLYLGVDADEWCTWCRYLSCVPFPPGDSPWWTCDECSDAG 339
BLAST of mRNA_E-fasciculatus_F_contig14150.3044.1 vs. uniprot
Match: A0A7S3UQB1_HETAK (Rhomboid-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQB1_HETAK) HSP 1 Score: 266 bits (680), Expect = 1.130e-82 Identity = 135/285 (47.37%), Postives = 179/285 (62.81%), Query Frame = 1
Query: 37 EYAV-PTYRSLIFTPLMFLICLILLFWEFGLNGWTAESLAENPSYGPSVETLIEAGAKRTDLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVLFILTAVNIILGMMPFLDNFAHCGGMLMGLFMGLGLLVQKREDDRGDRLHKKCYQISLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPGDNP---WWACDECSTVGF 879
EY + P +L+F M IC ++ +E L W S++ NP+ GP+ + L++AGAK T IVD G+ WR+ +PMFLH+G+VH +FNM G + +ER GW R+ IYL++G+FGT+ SAIFVP Q+MVGASGAIFG+ GA WADL QNWSV + LF LTA N + G MP+LDNFAH GGM+ G+ GL LL Q R D G +KCYQ +L +AA+ L++ + LY +D C C +SCVEFPPG P WW C C++ GF
Sbjct: 159 EYTLSPRQTTLLFGYSMITICTVMFIFEMYLADWEFASISLNPTLGPTHDVLLKAGAKETSKIVDEGETWRIFTPMFLHSGLVHLVFNMTGLWYLVREMERTHGWQRLTVIYLLSGIFGTLCSAIFVPYQLMVGASGAIFGMVGARWADLIQNWSVLHKPWVELSFLFFLTASNYVFGFMPYLDNFAHTGGMVFGVLCGLVLLAQTRVDHFGFARGRKCYQTALATLAAMGTAALLMAATAWLYSSADVYAICPRCSKLSCVEFPPGAGPDGYWWDCSVCASSGF 443
BLAST of mRNA_E-fasciculatus_F_contig14150.3044.1 vs. uniprot
Match: A0A7S3PMX5_9STRA (Rhomboid-like protein n=4 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMX5_9STRA) HSP 1 Score: 238 bits (606), Expect = 1.270e-71 Identity = 123/286 (43.01%), Postives = 177/286 (61.89%), Query Frame = 1
Query: 37 EYAVPTYRSLIFTPLMFL----ICLILLFWEFGLNGWTAESLAENPSYGPSVETLIEAGAKRTDLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTV-LFILTAVNIILGMMPFLDNFAHCGGMLMGLFMGLGLLVQKREDDRGDRLHKKCYQISLQLVAAVAVPTLM-ILGLSLLYGRSDPAEWCGWCENISCVEFPPG---DNPWWACDECS 867
EY + R + PL L +C I+ +NGW E + NP GP VETL++ GAK +DLI D GDWWRL++PM LH G+VH L NMLG + +G +E+ FG R+A + + +G+FG ++SA+F P V VGASGAIFG+FGA WADL QNW + + R ++ L I T N +G+MP+LDN+AH GG + GL +GL +L+ K + G+ + YQI+L+++AA+ +P L+ ++ L G +D + C C SC PPG D+ WW C +C+
Sbjct: 45 EYYIKHARPKTYKPLFTLGFLCLCCIMFVVSIAMNGWAVEPVQINPLIGPGVETLLDLGAKESDLIQD-GDWWRLLAPMVLHVGIVHLLANMLGLVVIGVPMEQEFGTLRIATVAISSGIFGVVMSALFAPHLVGVGASGAIFGLFGAAWADLAQNWELYRGRNKLILFQLIIYTVFNFAIGLMPYLDNWAHLGGFICGLVVGLAILI-KSYGELGEFRKRYAYQIALRVMAAIVLPILLGVMTFLLFVGAADFVKTCKICSYFSCYPMPPGASGDDLWWDCTDCT 328
BLAST of mRNA_E-fasciculatus_F_contig14150.3044.1 vs. uniprot
Match: A0A2R5H0C6_9STRA (Rhomboid-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H0C6_9STRA) HSP 1 Score: 230 bits (586), Expect = 1.020e-69 Identity = 116/266 (43.61%), Postives = 173/266 (65.04%), Query Frame = 1
Query: 70 FTPLMFLICLILLFWEFGLNGWTAESLAENPSYGPSVETLIEAGAKRTDLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVLFILTAV-NIILGMMPFLDNFAHCGGMLMGLFMGLGLLVQKREDDRGDRLHKKCYQISLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPG---DNPWWAC 855
F+ ++ +I++ E G+NGW E NP GPSVETL + GAK T LI++ G+++R+ +P+ LHAG VH LFN+L +G +ER FG +++ I++ +G+FG ++SAIF+P Q+ VGASGA+FG+FGA W+DL NWS+ + + + +L + N+ LG++P+LDNFAH GG GLF+G LLVQKR + GD +K YQ+ +Q +A V +P L ++ +LY + A+ C WC ISCV P G ++ WW C
Sbjct: 133 FSRCTAVVLIIVMIAEVGVNGWKLEDYQVNPLLGPSVETLSKMGAKDTSLILE-GEFYRIFTPIILHAGFVHLLFNLLALYNIGFSMERDFGSLKISIIFIGSGIFGVLLSAIFLPQQLSVGASGALFGLFGAAWSDLLHNWSLYGNSAKWVLLQLVLATIFNLGLGLLPYLDNFAHFGGFCCGLFLGFTLLVQKRYNIWGDLQQRKTYQVVVQSLALVILPILFVVLTLVLYLDVNVADSCDWCSYISCVPLPIGASEEDLWWEC 397
BLAST of mRNA_E-fasciculatus_F_contig14150.3044.1 vs. uniprot
Match: A0A7S3PR50_9STRA (Rhomboid-like protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PR50_9STRA) HSP 1 Score: 219 bits (558), Expect = 3.490e-65 Identity = 120/275 (43.64%), Postives = 159/275 (57.82%), Query Frame = 1
Query: 70 FTPLMFLICLILLFWEFGLN----GWTAESLAENPSYGPSVETLIEAGAKRTDLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCR-MFTVLFILTAVNIILGMMPFLDNFAHCGGMLMGLFMGLGLLVQKREDDRGDRLHKKCYQISLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPGDNPWWACDECSTVGF 879
FT M C +++ E +N G E + NP +GPS+E L+ GAKRTDLIV GDW+RL PMFLH G++H LFNM G+ +ER FG RVA IY+ +G FG + SAIF PT +GASGA +G+ GA WAD N+S +D+ + +F LF TA N LG++P LDNFAH GG++ G F GL +L R D D K YQI L+ + P ++I+ + +LY + D +C WC +SCV PWW C GF
Sbjct: 113 FTRFMIGTCTLVMLVEVLINNKEQGKPFEDFSLNPLFGPSIEVLLLMGAKRTDLIVQEGDWYRLFMPMFLHGGILHLLFNMAFLYSFGSSLEREFGHTRVAYIYVTSGFFGVLCSAIFNPTIPSIGASGACYGLIGAAWADFLLNFSFYRDQWKCVFAQLFFGTAFNACLGLIPQLDNFAHLGGLVCGFFTGLSVLTLPRYDLYSDLKPDKLYQICLKSIGIFITPIVIIIFIIILYVQVDVESYCPWCIYLSCVP-----TPWWGCGVQCEEGF 382
BLAST of mRNA_E-fasciculatus_F_contig14150.3044.1 vs. uniprot
Match: A0A7R9U3T8_9STRA (Rhomboid-like protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3T8_9STRA) HSP 1 Score: 219 bits (558), Expect = 6.400e-65 Identity = 119/281 (42.35%), Postives = 168/281 (59.79%), Query Frame = 1
Query: 49 PTYRSLIF-TPLMFLICLILLFWEFGLNGWTAESLAENPSYGPSVETLIEAGAKRTDLIVDNGDWWRLISPMFLHAGVVHFLFNMLGFLQVGAMVERVFGWWRVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDRCRMFTVLFILTAVNIILGMMPFLDNFAHCGGMLMGLFMGLGLLVQKREDDRGDRLHKKCYQISLQLVAAVAVPTLMILGLSLLYGRSDPAEWCG-WCENISCVEFPPGDNPWWACDE----CSTV 873
PT R ++ T L+ L + + +E G NGW +SL NP +GP V+TL++ GA I D G+WWRL M+LHAG++HF+ N +Q+G +E++ G + + IY+++G+F +SA+F P + VGASGA+FG+ G +WADL QNW + R LF+LT VN+++G+ P +DN+ H GG++MG +GL L VQKR D K YQ LQ+V AV L+ L L+LLY D E CG C+ ISCVE +W C E CS V
Sbjct: 128 PTPRRRVYVTYLILLGTAVAMVYEIGANGWKFDSLESNPFFGPDVDTLLDVGAINYFKITDEGEWWRLFVGMWLHAGIIHFVINGAVIVQLGRNLEQLHGPYSLVAIYILSGLFAATLSALFSPFTISVGASGALFGLLGGVWADLIQNWDLVYKPYRQLAGLFLLTVVNVLMGLAPLVDNYQHLGGLIMGTGVGLLLYVQKRYDALKRECPKLPYQAVLQIVGAVVSFNLLFLMLALLYAEVDVHEQCGVTCDRISCVE-----TSFWDCQEARHSCSGV 403
BLAST of mRNA_E-fasciculatus_F_contig14150.3044.1 vs. uniprot
Match: A0A7S2RTG0_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RTG0_9STRA) HSP 1 Score: 211 bits (536), Expect = 2.100e-64 Identity = 98/200 (49.00%), Postives = 138/200 (69.00%), Query Frame = 1
Query: 280 VHFLFNMLGFLQVGAMVERVFGWWRVACIYLVAGVFGTIVSAIFVPTQVMVGASGAIFGVFGALWADLWQNWSVNQDR-CRMFTVLFILTAVNIILGMMPFLDNFAHCGGMLMGLFMGLGLLVQKREDDRGDRLHKKCYQISLQLVAAVAVPTLMILGLSLLYGRSDPAEWCGWCENISCVEFPPGDNPWWACDECSTVG 876
+H+LFNM+ VG +ER FG + I+LV+G G I SAIF P + VGASG +FG+FGA W+DL N+S+ + R CR+F LF +T +N+I+G++P++DNFAH GG+L G+ G G+LV R G+ +K YQ+ LQ+++AV +P L+++ L +LY +P EWC WC +SCV+FPPG NPWW CD CS VG
Sbjct: 1 IHWLFNMIALTAVGFPLERQFGSGALLYIFLVSGFMGNIFSAIFSPLTIGVGASGGVFGIFGAAWSDLILNYSLYKGRVCRIFVQLFCVTFLNLIVGLIPYVDNFAHIGGLLTGMIAGFGVLVANRYSRYGELKERKRYQLVLQIMSAVLIPVLIVVCLFVLY-LGEPGEWCSWCHYMSCVQFPPGPNPWWTCDSCSNVG 199 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14150.3044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig14150.3044.1 >prot_E-fasciculatus_F_contig14150.3044.1 ID=prot_E-fasciculatus_F_contig14150.3044.1|Name=mRNA_E-fasciculatus_F_contig14150.3044.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=293bp DDRPRNENGTTGEYAVPTYRSLIFTPLMFLICLILLFWEFGLNGWTAESLback to top mRNA from alignment at E-fasciculatus_F_contig14150:612..3411- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig14150.3044.1 ID=mRNA_E-fasciculatus_F_contig14150.3044.1|Name=mRNA_E-fasciculatus_F_contig14150.3044.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2800bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14150:612..3411- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14150:612..3411- >mRNA_E-fasciculatus_F_contig14150.3044.1 ID=mRNA_E-fasciculatus_F_contig14150.3044.1|Name=mRNA_E-fasciculatus_F_contig14150.3044.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1758bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14150:612..3411- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |