mRNA_E-fasciculatus_F_contig14149.3040.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig14149.3040.1
Unique NamemRNA_E-fasciculatus_F_contig14149.3040.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig14149.3040.1 vs. uniprot
Match: A0A6H5KJ77_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ77_9PHAE)

HSP 1 Score: 461 bits (1186), Expect = 4.780e-148
Identity = 247/261 (94.64%), Postives = 248/261 (95.02%), Query Frame = 1 
Query:    1 MGGKKDEALGEVFIPIACFKEPKAKRTKLEMKIVPPPPATSRYSKTLGKYNINIKTPXXXXXXXXILGGGGRSPSASPPRXXXXXXXXXXXXXPDLGTLSVSMSVIETELPDTSTYRGRGVPPGGVKIRCSLDLADEFTCAWPALLLRHGAPSSGSGGDADEEGGERGGGVEKWRVSAGFGGLVLSKVASGEGAAADSSPFLRMDPSGPADGYVMEVYENQRKKQPWGWGSGRKRHLRTSDPGRFSDAKGENRLHVKLLEQ 783
            MGGKKDEALGEVFIPIA FKEPKAKRTKLEMKI PPPPATSRYSKTLGKYNINIKTP XXXXXX ILGGGGRSPSASPPR XXXXXX      PDLGTL VSMSVIE ELPDTSTYRGRGVPPGGVK+RCSLDLADEFTCAWPALLLRHGAPSSGSGGDADEEGGERGGGVEKWRVSAGFGGLVLSKVASGEGAAADSSPFLRMDPSGPADGYVMEVYENQRKKQPWGWGSGRKRHLRTSDPGRFSDAKGENRLHVKLLEQ
Sbjct:    1 MGGKKDEALGEVFIPIASFKEPKAKRTKLEMKIAPPPPATSRYSKTLGKYNINIKTPSXXXXXXNILGGGGRSPSASPPRGXXXXXXPVREP-PDLGTLCVSMSVIEAELPDTSTYRGRGVPPGGVKVRCSLDLADEFTCAWPALLLRHGAPSSGSGGDADEEGGERGGGVEKWRVSAGFGGLVLSKVASGEGAAADSSPFLRMDPSGPADGYVMEVYENQRKKQPWGWGSGRKRHLRTSDPGRFSDAKGENRLHVKLLEQ 260
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BLAST of mRNA_E-fasciculatus_F_contig14149.3040.1 vs. uniprot
Match: D8LJF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF1_ECTSI)

HSP 1 Score: 461 bits (1185), Expect = 3.490e-147
Identity = 250/261 (95.79%), Postives = 250/261 (95.79%), Query Frame = 1 
Query:    1 MGGKKDEALGEVFIPIACFKEPKAKRTKLEMKIVPPPPATSRYSKTLGKYNINIKTPXXXXXXXXILGGGGRSPSASPPRXXXXXXXXXXXXXPDLGTLSVSMSVIETELPDTSTYRGRGVPPGGVKIRCSLDLADEFTCAWPALLLRHGAPSSGSGGDADEEGGERGGGVEKWRVSAGFGGLVLSKVASGEGAAADSSPFLRMDPSGPADGYVMEVYENQRKKQPWGWGSGRKRHLRTSDPGRFSDAKGENRLHVKLLEQ 783
            MGGKKDEALGEVFIPIA FKEPKAKRTKLEMKI PPPPATSRYSKTLGKYNINIKTP XXXXXX ILGGGGRSPSASPPRXXXXXXXX     PDLGTL VSMSVIETELPDTSTYRGRGVPPGGVKIRCSLDLADEFTCAWPALLLRHGAPSSGSGGDADEEGG RGGGVEKWRVSAGFGGLVLSKVASGEGAAADSSPFLRMDPSGPADGYVMEVYENQRKKQPWGWGSGRKRHLRTSDPGRFSDAKGENRLHVKLLEQ
Sbjct:  179 MGGKKDEALGEVFIPIASFKEPKAKRTKLEMKITPPPPATSRYSKTLGKYNINIKTPSXXXXXXNILGGGGRSPSASPPRXXXXXXXXVREP-PDLGTLCVSMSVIETELPDTSTYRGRGVPPGGVKIRCSLDLADEFTCAWPALLLRHGAPSSGSGGDADEEGGGRGGGVEKWRVSAGFGGLVLSKVASGEGAAADSSPFLRMDPSGPADGYVMEVYENQRKKQPWGWGSGRKRHLRTSDPGRFSDAKGENRLHVKLLEQ 438
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig14149.3040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJ77_9PHAE4.780e-14894.64C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LJF1_ECTSI3.490e-14795.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig14149contigE-fasciculatus_F_contig14149:927..3367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size785
Cds size783
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig14149.3040.1prot_E-fasciculatus_F_contig14149.3040.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig14149 927..3367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927905.9925814-CDS-E-fasciculatus_F_contig14149:926..9951622927905.9925814-CDS-E-fasciculatus_F_contig14149:926..995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14149 927..995 +
1695995746.365838-CDS-E-fasciculatus_F_contig14149:926..9951695995746.365838-CDS-E-fasciculatus_F_contig14149:926..995Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14149 927..995 +
1622927906.0571525-CDS-E-fasciculatus_F_contig14149:1590..18321622927906.0571525-CDS-E-fasciculatus_F_contig14149:1590..1832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14149 1591..1832 +
1695995746.3756983-CDS-E-fasciculatus_F_contig14149:1590..18321695995746.3756983-CDS-E-fasciculatus_F_contig14149:1590..1832Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14149 1591..1832 +
1622927906.0796304-CDS-E-fasciculatus_F_contig14149:2532..28291622927906.0796304-CDS-E-fasciculatus_F_contig14149:2532..2829Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14149 2533..2829 +
1695995746.3848562-CDS-E-fasciculatus_F_contig14149:2532..28291695995746.3848562-CDS-E-fasciculatus_F_contig14149:2532..2829Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14149 2533..2829 +
1622927906.0988-CDS-E-fasciculatus_F_contig14149:3192..33671622927906.0988-CDS-E-fasciculatus_F_contig14149:3192..3367Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14149 3193..3367 +
1695995746.3940098-CDS-E-fasciculatus_F_contig14149:3192..33671695995746.3940098-CDS-E-fasciculatus_F_contig14149:3192..3367Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig14149 3193..3367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig14149.3040.1

>prot_E-fasciculatus_F_contig14149.3040.1 ID=prot_E-fasciculatus_F_contig14149.3040.1|Name=mRNA_E-fasciculatus_F_contig14149.3040.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=261bp
MGGKKDEALGEVFIPIACFKEPKAKRTKLEMKIVPPPPATSRYSKTLGKY
NINIKTPNINIKTPNILGGGGRSPSASPPRGRSPPASPVRGEPPDLGTLS
VSMSVIETELPDTSTYRGRGVPPGGVKIRCSLDLADEFTCAWPALLLRHG
APSSGSGGDADEEGGERGGGVEKWRVSAGFGGLVLSKVASGEGAAADSSP
FLRMDPSGPADGYVMEVYENQRKKQPWGWGSGRKRHLRTSDPGRFSDAKG
ENRLHVKLLEQ
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mRNA from alignment at E-fasciculatus_F_contig14149:927..3367+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig14149.3040.1 ID=mRNA_E-fasciculatus_F_contig14149.3040.1|Name=mRNA_E-fasciculatus_F_contig14149.3040.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2441bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14149:927..3367+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGGGGAAGAAGGACGAGGCACTGGGGGAAGTCTTCATCCCCATCGC
CTGCTTCAAGGAGCCCAAGGTAACAAGCAATCAATCCGATTTTCTCCGAC
AGGGTGTGTTGCAGAAAAGAGGACTCGAAGGTGGCGCAAAAATAATAAAA
ATAGCAAACAGTTTTGTCTTGGGACTGAAATCTGTGCGACAGGCGATCCC
TTTTGTCTTTCGCTTCCAGCAAGCTTGGGGGGAGCGTCCCCCCACACACA
CAAACACCCCACACCATTGATTCGGTTCGGAGAGGAGGGGCATGGAAAGA
AAGACAGGAGTTCGAACGGCGTTTCAACTCGAAGGGGGACGCGCATGTCT
GTAATGAAACATCACTCTATCAAGGTCGTCATCCACGAACGAGCCTGGCG
CAACCTTTCTCGTACGATCCCGATTGGACAATTTTCGTGGGGATAAGAAG
CGCACGTGTGCTTCCTGCGCTCTTGTGTGCGAACGTTCTGTTGGGAACAT
TCCTAGCACCGGTCTTCAGAGTACCAACACAAGTAGATGCTCTTCGTGAC
CGTTTCTCTCTTCTTCCCCTTAAAACGTGGGATGAGCAGACAGAACAGTG
GCATCACCTCCCGCGTCTGGCTGAAGCCTCTCTCCCTCCCTCTCCACTGC
TGTGTGTCCGTCAGGCAAAGCGTACGAAGCTGGAGATGAAAATCGTCCCT
CCCCCCCCGGCCACGAGCCGGTACTCCAAGACCCTGGGCAAGTACAACAT
CAACATCAAGACCCCCAACATCAACATCAAGACGCCCAACATCCTCGGAG
GGGGGGGTCGAAGCCCATCCGCGTCCCCCCCTCGGGGACGAAGTCCCCCC
GCGTCCCCTGTGAGAGGAGAGCCGCCGGACCTCGGCACCCTCTCCGTGTC
CATGAGGTACGTACCGTAGGTGACATGACATCTTCCCCCCCCCCCACGGA
CCGACTTTCGAAACACTATTTTCTCCACGGCAGTAGTAGGAAGAGTGGCG
GTGCCGAAAATGGCTGCGGTGTTGGAGCCGTCTTGTCGAGAGATAGCCTT
CCGAAGACATGTCGTTTTCGTTTTTGCATCATCTTCATAGTGGAGTAATC
TAATCGATGATAGCTTTTACAATCGGTCTACAGCAGGGGGTGTGGTATCT
TGCGTCGTCACCTACGGTACGCGCGGGATTTCGACTATACTATTTGTGCC
GTGTGGGCAAGAAAGAAAAGTGCGTGGCATTCCTTGGTATGTTGCACGAC
TGGCTGTTTTTATGCAAGCAAGAAGAGGTTGTTTCTTGGTACATATGTTG
CACGGCTTCTTTTTTTTTTTTTGTGTGAAGTTGTCAGGAGCCTGCCCTGT
GACCGAGTACCCCGTGCGTGGTCAATGATCTAACGACTACGACATGCGTT
TTCATGAGTTCACCGACCCCCCCTCCCCCCCAATAAAACCGAAATCGATC
CAAAAACAACGCGACAACATTGGCATCATTGTGCTTATCCCTCCTCCCCC
CCACCAAATAAAACCGAAATCGATCCGAAAACAACACGACGGCGTCGGCA
TCATTGTGTTCATCCTTCCTCCCTTCCTCCGTCCAACAACATCTACCACA
CGACAGCGTCATCGAGACGGAGCTCCCCGACACCTCCACCTACAGGGGCA
GAGGCGTTCCTCCGGGCGGGGTAAAAATCCGCTGCTCCCTAGATCTCGCG
GACGAGTTCACGTGCGCGTGGCCCGCCCTGCTCTTGCGTCACGGAGCCCC
CTCGTCCGGCTCTGGGGGCGACGCGGATGAGGAGGGGGGCGAGAGGGGAG
GGGGCGTCGAGAAGTGGCGTGTTTCGGCCGGGTTCGGGGGCCTAGTGCTG
TCCAAGGTGGCGAGCGGAGAGGGCGCGGCGGCGGACTCTTCCCCTTTCCT
TAGGTGTCAAGTTTAGTTTTTCTTTTTCTCTCAAGCTGCTGTATGTATAT
TTTTGTTGTTGGACTCCTGCGATAATTGGTTAAAAGTGGACGGGTGTTGT
TGCGGGTCGGTCGTGTATGATTTGGCCTACTGCTGCTCTTGTGTGTATGA
GGTGTCGGGATATTGTTTTCTCGCTTCGTGATCACTTGACCGATATCGTC
ACAGCATTTGTTTTTGAGCGGGACCTGCTCTGTCAACCTATGTGATTTTG
AATACAGTCTTGTTCAGCATGATACGATTCGTCCCCATGAATATCACGCT
CATCACGATTGACTGCCGTAAAACTCTGCCGTGTCGTTGATTTCATTGCT
GTTTTTTATTGTCCAGGATGGATCCGTCCGGTCCCGCAGACGGCTACGTG
ATGGAGGTGTACGAGAACCAGAGGAAGAAGCAGCCGTGGGGGTGGGGCTC
CGGCAGGAAGCGGCACCTGAGGACGTCGGACCCCGGCCGTTTCTCCGACG
CAAAGGGAGAGAACCGCCTCCACGTCAAGCTTCTCGAACAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig14149:927..3367+

>mRNA_E-fasciculatus_F_contig14149.3040.1 ID=mRNA_E-fasciculatus_F_contig14149.3040.1|Name=mRNA_E-fasciculatus_F_contig14149.3040.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1566bp|location=Sequence derived from alignment at E-fasciculatus_F_contig14149:927..3367+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGGGGAAGAAGGACGAGGCACTGGGGGAAGTCTTCATCCCCATCGC
CTGCTTCAAGGAGCCCAAGATGGGGGGGAAGAAGGACGAGGCACTGGGGG
AAGTCTTCATCCCCATCGCCTGCTTCAAGGAGCCCAAGGCAAAGCGTACG
AAGCTGGAGATGAAAATCGTCCCTCCCCCCCCGGCCACGAGCCGGTACTC
CAAGACCCTGGGCAAGTACAACATCAACATCAAGACCCCCAACATCAACA
TCAAGACGCCCAACATCCTCGGAGGGGGGGGTCGAAGCCCATCCGCGTCC
CCCCCTCGGGGACGAAGTCCCCCCGCGTCCCCTGTGAGAGGAGAGCCGCC
GGACCTCGGCACCCTCTCCGTGTCCATGAGGCAAAGCGTACGAAGCTGGA
GATGAAAATCGTCCCTCCCCCCCCGGCCACGAGCCGGTACTCCAAGACCC
TGGGCAAGTACAACATCAACATCAAGACCCCCAACATCAACATCAAGACG
CCCAACATCCTCGGAGGGGGGGGTCGAAGCCCATCCGCGTCCCCCCCTCG
GGGACGAAGTCCCCCCGCGTCCCCTGTGAGAGGAGAGCCGCCGGACCTCG
GCACCCTCTCCGTGTCCATGAGCGTCATCGAGACGGAGCTCCCCGACACC
TCCACCTACAGGGGCAGAGGCGTTCCTCCGGGCGGGGTAAAAATCCGCTG
CTCCCTAGATCTCGCGGACGAGTTCACGTGCGCGTGGCCCGCCCTGCTCT
TGCGTCACGGAGCCCCCTCGTCCGGCTCTGGGGGCGACGCGGATGAGGAG
GGGGGCGAGAGGGGAGGGGGCGTCGAGAAGTGGCGTGTTTCGGCCGGGTT
CGGGGGCCTAGTGCTGTCCAAGGTGGCGAGCGGAGAGGGCGCGGCGGCGG
ACTCTTCCCCTTTCCTTAGCGTCATCGAGACGGAGCTCCCCGACACCTCC
ACCTACAGGGGCAGAGGCGTTCCTCCGGGCGGGGTAAAAATCCGCTGCTC
CCTAGATCTCGCGGACGAGTTCACGTGCGCGTGGCCCGCCCTGCTCTTGC
GTCACGGAGCCCCCTCGTCCGGCTCTGGGGGCGACGCGGATGAGGAGGGG
GGCGAGAGGGGAGGGGGCGTCGAGAAGTGGCGTGTTTCGGCCGGGTTCGG
GGGCCTAGTGCTGTCCAAGGTGGCGAGCGGAGAGGGCGCGGCGGCGGACT
CTTCCCCTTTCCTTAGGATGGATCCGTCCGGTCCCGCAGACGGCTACGTG
ATGGAGGTGTACGAGAACCAGAGGAAGAAGCAGCCGTGGGGGTGGGGCTC
CGGCAGGAAGCGGCACCTGAGGACGTCGGACCCCGGCCGTTTCTCCGACG
CAAAGGGAGAGAACCGCCTCCACGTCAAGCTTCTCGAACAGGATGGATCC
GTCCGGTCCCGCAGACGGCTACGTGATGGAGGTGTACGAGAACCAGAGGA
AGAAGCAGCCGTGGGGGTGGGGCTCCGGCAGGAAGCGGCACCTGAGGACG
TCGGACCCCGGCCGTTTCTCCGACGCAAAGGGAGAGAACCGCCTCCACGT
CAAGCTTCTCGAACAG
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